Taeniopygia guttata isolate Blue55 chromosome 13, bTaeGut1.4.pri, whole genome shotgun sequence.
type: Entry
definition: Taeniopygia guttata isolate Blue55 chromosome 13, bTaeGut1.4.pri, whole genome shotgun sequence.
sequence version: NC_044225.2
sequence date: 2021-05-26
sequence: sequence
division: CON
label: NC_044225.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA558048
dblink: SAMN02981239
keyword: WGS
keyword: RefSeq
source: Taeniopygia guttata (zebra finch)
organism: Taeniopygia guttata
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia.
reference: 1
references: 33911273
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM012095.2.\nOn May 24, 2021 this sequence version replaced NC_044225.1.\nAssembly name: bTaeGut1.4.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/05/04. The original whole-genome shotgun project has the\naccession RRCB00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 09-APR-2021\nAssembly Method :: FALCON v. 5.1.1; FALCON unzip v.\n Nov2017(uc4); Purge_dups v. 1.0.1;\n Scaff10X v. 4.1.0; Bionano Solve\n BspQI/BssSI v. 3.4; Salsa2 v. 2.2.; Arrow\n polishing v. variantCaller 2.3.3; Merfin\n filtering v. 0.1; longranger align v.\n 2.2.2; freebayes polishing v. 1.3.1;\n gEVAL manual curation v. 2021-04-09; VGP\n pipeline v. 1.7\nAssembly Name :: bTaeGut1.4.pri\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 88.2x\nSequencing Technology :: PacBio RSII; 10X Genomics linked reads;\n Bionano Genomics two enzymes; Arima\n Genomics Hi-C\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Taeniopygia guttata Annotation\n Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 18052104
topology: linear
so has quality: SO_0000987
location: 1..18052104
location: region:1-18052104:1
RO_0002162: 59729

NC_044225
type: RefSeq
SIO_000068: refseq

PRJNA558048
type: BioProject
SIO_000068: bioproject

SAMN02981239
type: BioSample
SIO_000068: biosample

1
title: Towards complete and error-free genome assemblies of all vertebrate species
author: Rhie, A.
author: McCarthy, S.A.
author: Fedrigo, O.
author: Damas, J.
author: Formenti, G.
author: Koren, S.
author: Uliano-Silva, M.
author: Chow, W.
author: Fungtammasan, A.
author: Kim, J.
author: Lee, C.
author: Ko, B.J.
author: Chaisson, M.
author: Gedman, G.L.
author: Cantin, L.J.
author: Thibaud-Nissen, F.
author: Haggerty, L.
author: Bista, I.
author: Smith, M.
author: Haase, B.
author: Mountcastle, J.
author: Winkler, S.
author: Paez, S.
author: Howard, J.
author: Vernes, S.C.
author: Lama, T.M.
author: Grutzner, F.
author: Warren, W.C.
author: Balakrishnan, C.N.
author: Burt, D.
author: George, J.M.
author: Biegler, M.T.
author: Iorns, D.
author: Digby, A.
author: Eason, D.
author: Robertson, B.
author: Edwards, T.
author: Wilkinson, M.
author: Turner, G.
author: Meyer, A.
author: Kautt, A.F.
author: Franchini, P.
author: Detrich, H.W. 3rd
author: Svardal, H.
author: Wagner, M.
author: Naylor, G.J.P.
author: Pippel, M.
author: Malinsky, M.
author: Mooney, M.
author: Simbirsky, M.
author: Hannigan, B.T.
author: Pesout, T.
author: Houck, M.
author: Misuraca, A.
author: Kingan, S.B.
author: Hall, R.
author: Kronenberg, Z.
author: Sovic, I.
author: Dunn, C.
author: Ning, Z.
author: Hastie, A.
author: Lee, J.
author: Selvaraj, S.
author: Green, R.E.
author: Putnam, N.H.
author: Gut, I.
author: Ghurye, J.
author: Garrison, E.
author: Sims, Y.
author: Collins, J.
author: Pelan, S.
author: Torrance, J.
author: Tracey, A.
author: Wood, J.
author: Dagnew, R.E.
author: Guan, D.
author: London, S.E.
author: Clayton, D.F.

33911273
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18052104:1
position: 18052104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18052104:1:source
so part of: sequence
organism: Taeniopygia guttata
mol type: genomic DNA
isolate: Blue55
chromosome: 13
sex: female
tissue type: Muscle, blood, brain
dev stage: adult
country: USA
lat lon: 36.0014 N 78.9382 W
collected by: Matt Biegler, Duke University and Rockefeller University

59729
type: Taxonomy
SIO_000068: taxonomy

KCNMB1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: KCNMB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(37863..47407)
location: region:37863-47407:-1
so has part: feature:37863-47407:-1:exon
subclass of: SO_0000010

100218704
type: Gene
SIO_000068: ncbigene

position:37863:-1
position: 37863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47407:-1
position: 47407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37863-47407:-1:exon

KCNMB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: KCNMB1
product: potassium calcium-activated channel subfamily M regulatory beta subunit 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns
transcript id: XM_002187697.5
SIO_010081: KCNMB1
subclass of: SO_0000673
so part of: KCNMB1
location: complement(join(37863..39163,40646..40841,42245..42410,47254..47407))
location: region:37863-47407:-1
so has part: feature:47254-47407:-1:exon
so has part: feature:42245-42410:-1:exon
so has part: feature:40646-40841:-1:exon
so has part: feature:37863-39163:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:47254-47407:-1:exon

position:47254:-1
position: 47254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:42245-42410:-1:exon

position:42245:-1
position: 42245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42410:-1
position: 42410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:40646-40841:-1:exon

position:40646:-1
position: 40646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40841:-1
position: 40841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:37863-39163:-1:exon

position:39163:-1
position: 39163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KCNMB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: KCNMB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcium-activated potassium channel subunit beta-1
translation: MLGKKLVTAQKRGETRALCLGLGMVACSVMMYFFIGITIVPFYTKSVWTTETVCKVLKANIKDKVFCPNSKGPEDEEIFPYPCLQVWVNLTASGQEVMLYQTEDTLERNPKCSYVPDKLENSKEVKARIEIIASNFKKYQTFPCYYDPGGTQTNVILSRLYPAKALLFAFLWPTLMFTGGCLIVFLVKISQYVSVLSAWQ
SIO_010081: KCNMB1
subclass of: SO_0000673
so part of: KCNMB1
location: complement(join(38894..39163,40646..40841,42245..42381))
location: region:38894-42381:-1
so has part: feature:42245-42381:-1:exon
so has part: feature:40646-40841:-1:exon
so has part: feature:38894-39163:-1:exon

XP_002187733.1
type: Protein
SIO_000068: ncbiprotein

position:38894:-1
position: 38894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42381:-1
position: 42381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42245-42381:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:40646-40841:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:38894-39163:-1:exon

KCNIP1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: KCNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 127124..357216
location: region:127124-357216:1
so has part: feature:127124-357216:1:exon
subclass of: SO_0000010

100221606
type: Gene
SIO_000068: ncbigene

position:127124:1
position: 127124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:357216:1
position: 357216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127124-357216:1:exon

KCNIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 3 long SRA reads, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 86 samples with support for all annotated introns
transcript id: XM_032750949.2
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(127124..127750,336844..336968,343103..343172,344598..344668,346279..346386,347341..347445,348016..348078,350317..357216)
location: region:127124-357216:1
so has part: feature:127124-127750:1:exon
so has part: feature:336844-336968:1:exon
so has part: feature:343103-343172:1:exon
so has part: feature:344598-344668:1:exon
so has part: feature:346279-346386:1:exon
so has part: feature:347341-347445:1:exon
so has part: feature:348016-348078:1:exon
so has part: feature:350317-357216:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:127124-127750:1:exon

position:127750:1
position: 127750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:336844-336968:1:exon

position:336844:1
position: 336844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336968:1
position: 336968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:343103-343172:1:exon

position:343103:1
position: 343103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343172:1
position: 343172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:344598-344668:1:exon

position:344598:1
position: 344598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:344668:1
position: 344668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:346279-346386:1:exon

position:346279:1
position: 346279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:346386:1
position: 346386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:347341-347445:1:exon

position:347341:1
position: 347341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347445:1
position: 347445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:348016-348078:1:exon

position:348016:1
position: 348016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348078:1
position: 348078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:350317-357216:1:exon

position:350317:1
position: 350317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KCNIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
transcript id: XM_032750948.2
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(127125..127750,143847..143914,336844..336968,343103..343172,344598..344668,346279..346386,347341..347445,348016..348078,350317..357216)
location: region:127125-357216:1
so has part: feature:127125-127750:1:exon
so has part: feature:143847-143914:1:exon
so has part: feature:336844-336968:1:exon
so has part: feature:343103-343172:1:exon
so has part: feature:344598-344668:1:exon
so has part: feature:346279-346386:1:exon
so has part: feature:347341-347445:1:exon
so has part: feature:348016-348078:1:exon
so has part: feature:350317-357216:1:exon

position:127125:1
position: 127125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127125-127750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:143847-143914:1:exon

position:143847:1
position: 143847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:143914:1
position: 143914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:336844-336968:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:343103-343172:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:344598-344668:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:346279-346386:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:347341-347445:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:348016-348078:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:350317-357216:1:exon

KCNIP1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_005981862.1
SIO_010081: KCNIP1
so part of: KCNIP1
location: join(127125..127750,143847..143914,336844..336968,343103..343172,344598..344668,346279..346386,347341..347445,348016..348078,350317..355818,356048..357216)
location: region:127125-357216:1
so has part: feature:127125-127750:1:exon
so has part: feature:143847-143914:1:exon
so has part: feature:336844-336968:1:exon
so has part: feature:343103-343172:1:exon
so has part: feature:344598-344668:1:exon
so has part: feature:346279-346386:1:exon
so has part: feature:347341-347445:1:exon
so has part: feature:348016-348078:1:exon
so has part: feature:350317-355818:1:exon
so has part: feature:356048-357216:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:127125-127750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:143847-143914:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:336844-336968:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:343103-343172:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:344598-344668:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:346279-346386:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:347341-347445:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:348016-348078:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:350317-355818:1:exon

position:355818:1
position: 355818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:356048-357216:1:exon

position:356048:1
position: 356048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KCNIP1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XR_005981863.1
SIO_010081: KCNIP1
so part of: KCNIP1
location: join(127125..127750,143847..143914,336844..336968,343103..343172,344598..344668,346279..346386,347341..347445,348016..348078,350317..355818,356754..357216)
location: region:127125-357216:1
so has part: feature:127125-127750:1:exon
so has part: feature:143847-143914:1:exon
so has part: feature:336844-336968:1:exon
so has part: feature:343103-343172:1:exon
so has part: feature:344598-344668:1:exon
so has part: feature:346279-346386:1:exon
so has part: feature:347341-347445:1:exon
so has part: feature:348016-348078:1:exon
so has part: feature:350317-355818:1:exon
so has part: feature:356754-357216:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:127125-127750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:143847-143914:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:336844-336968:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:343103-343172:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:344598-344668:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:346279-346386:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:347341-347445:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:348016-348078:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:350317-355818:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:356754-357216:1:exon

position:356754:1
position: 356754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KCNIP1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_005981864.1
SIO_010081: KCNIP1
so part of: KCNIP1
location: join(127125..127750,143847..143914,336844..336968,343103..343172,344598..344668,346279..346386,347341..347445,348016..348078,350317..355624,355716..357216)
location: region:127125-357216:1
so has part: feature:127125-127750:1:exon
so has part: feature:143847-143914:1:exon
so has part: feature:336844-336968:1:exon
so has part: feature:343103-343172:1:exon
so has part: feature:344598-344668:1:exon
so has part: feature:346279-346386:1:exon
so has part: feature:347341-347445:1:exon
so has part: feature:348016-348078:1:exon
so has part: feature:350317-355624:1:exon
so has part: feature:355716-357216:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:127125-127750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:143847-143914:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:336844-336968:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:343103-343172:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:344598-344668:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:346279-346386:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:347341-347445:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:348016-348078:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:350317-355624:1:exon

position:355624:1
position: 355624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:355716-357216:1:exon

position:355716:1
position: 355716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KCNIP1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_005981865.1
SIO_010081: KCNIP1
so part of: KCNIP1
location: join(127125..127750,143847..143914,336844..336968,343103..343172,344598..344668,346279..346386,347341..347445,348016..348078,350317..355624,355716..355818,356754..357216)
location: region:127125-357216:1
so has part: feature:127125-127750:1:exon
so has part: feature:143847-143914:1:exon
so has part: feature:336844-336968:1:exon
so has part: feature:343103-343172:1:exon
so has part: feature:344598-344668:1:exon
so has part: feature:346279-346386:1:exon
so has part: feature:347341-347445:1:exon
so has part: feature:348016-348078:1:exon
so has part: feature:350317-355624:1:exon
so has part: feature:355716-355818:1:exon
so has part: feature:356754-357216:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:127125-127750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:143847-143914:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:336844-336968:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:343103-343172:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:344598-344668:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:346279-346386:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:347341-347445:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:348016-348078:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:350317-355624:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:355716-355818:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:356754-357216:1:exon

KCNIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: KCNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Kv channel-interacting protein 1 isoform X1
translation: MLAECRAAVLCFFPPPSFFSFLSGLSLFCFVLGGISHRFCSLSVEGWGKRNKKNILAKRNPPQKLRSSFCNGCCHGYILFSTNETKKTIKRSCGSRRSLVQLLFQSVWQVLLEDKIEDELEMTTVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASMYAHYLFNAFDTAQNGSVKFEDFVMALSILLRGTVHEKLRWTFNLYDINKDGCINKEEMMDIVKAIYDMMGKYTYPVLKEDAPRQHVEVFFQKMDKNKDGVVTLDEFIESCQEDDNIMRSLQLFENVM
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(127479..127750,143847..143914,336844..336968,343103..343172,344598..344668,346279..346386,347341..347445,348016..348078,350317..350364)
location: region:127479-350364:1
so has part: feature:127479-127750:1:exon
so has part: feature:143847-143914:1:exon
so has part: feature:336844-336968:1:exon
so has part: feature:343103-343172:1:exon
so has part: feature:344598-344668:1:exon
so has part: feature:346279-346386:1:exon
so has part: feature:347341-347445:1:exon
so has part: feature:348016-348078:1:exon
so has part: feature:350317-350364:1:exon

XP_032606839.1
type: Protein
SIO_000068: ncbiprotein

position:127479:1
position: 127479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:350364:1
position: 350364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127479-127750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:143847-143914:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:336844-336968:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:343103-343172:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:344598-344668:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:346279-346386:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:347341-347445:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:348016-348078:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:350317-350364:1:exon

KCNIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: KCNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Kv channel-interacting protein 1 isoform X2
translation: MGAVMGTFSSLQTKQRRPSKDKIEDELEMTTVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASMYAHYLFNAFDTAQNGSVKFEDFVMALSILLRGTVHEKLRWTFNLYDINKDGCINKEEMMDIVKAIYDMMGKYTYPVLKEDAPRQHVEVFFQKMDKNKDGVVTLDEFIESCQEDDNIMRSLQLFENVM
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(127690..127750,336844..336968,343103..343172,344598..344668,346279..346386,347341..347445,348016..348078,350317..350364)
location: region:127690-350364:1
so has part: feature:127690-127750:1:exon
so has part: feature:336844-336968:1:exon
so has part: feature:343103-343172:1:exon
so has part: feature:344598-344668:1:exon
so has part: feature:346279-346386:1:exon
so has part: feature:347341-347445:1:exon
so has part: feature:348016-348078:1:exon
so has part: feature:350317-350364:1:exon

XP_032606840.1
type: Protein
SIO_000068: ncbiprotein

position:127690:1
position: 127690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127690-127750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:336844-336968:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:343103-343172:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:344598-344668:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:346279-346386:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:347341-347445:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:348016-348078:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:350317-350364:1:exon

LOC100221547
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC100221547
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 366732..381953
location: region:366732-381953:1
so has part: feature:366732-381953:1:exon
subclass of: SO_0000010

100221547
type: Gene
SIO_000068: ncbigene

position:366732:1
position: 366732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:381953:1
position: 381953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366732-381953:1:exon

LOC100221547
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100221547
product: gamma-aminobutyric acid type A receptor subunit pi, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_002188687.5
SIO_010081: LOC100221547
subclass of: SO_0000673
so part of: LOC100221547
location: join(366732..366934,367121..367210,368547..368656,372418..372485,374230..374447,375281..375363,377630..377767,378988..379140,379686..379879,380468..381953)
location: region:366732-381953:1
so has part: feature:366732-366934:1:exon
so has part: feature:367121-367210:1:exon
so has part: feature:368547-368656:1:exon
so has part: feature:372418-372485:1:exon
so has part: feature:374230-374447:1:exon
so has part: feature:375281-375363:1:exon
so has part: feature:377630-377767:1:exon
so has part: feature:378988-379140:1:exon
so has part: feature:379686-379879:1:exon
so has part: feature:380468-381953:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:366732-366934:1:exon

position:366934:1
position: 366934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:367121-367210:1:exon

position:367121:1
position: 367121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367210:1
position: 367210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:368547-368656:1:exon

position:368547:1
position: 368547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:368656:1
position: 368656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:372418-372485:1:exon

position:372418:1
position: 372418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:372485:1
position: 372485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:374230-374447:1:exon

position:374230:1
position: 374230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:374447:1
position: 374447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:375281-375363:1:exon

position:375281:1
position: 375281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:375363:1
position: 375363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:377630-377767:1:exon

position:377630:1
position: 377630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:377767:1
position: 377767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:378988-379140:1:exon

position:378988:1
position: 378988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:379140:1
position: 379140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:379686-379879:1:exon

position:379686:1
position: 379686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:379879:1
position: 379879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:380468-381953:1:exon

position:380468:1
position: 380468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100221547
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100221547
product: gamma-aminobutyric acid type A receptor subunit pi, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030284145.3
SIO_010081: LOC100221547
subclass of: SO_0000673
so part of: LOC100221547
location: join(366732..366934,367121..367210,368547..368656,372418..372485,374230..374447,375281..375363,377630..377767,378988..379140,379798..379879,380468..380654)
location: region:366732-380654:1
so has part: feature:366732-366934:1:exon
so has part: feature:367121-367210:1:exon
so has part: feature:368547-368656:1:exon
so has part: feature:372418-372485:1:exon
so has part: feature:374230-374447:1:exon
so has part: feature:375281-375363:1:exon
so has part: feature:377630-377767:1:exon
so has part: feature:378988-379140:1:exon
so has part: feature:379798-379879:1:exon
so has part: feature:380468-380654:1:exon

position:380654:1
position: 380654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366732-366934:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:367121-367210:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:368547-368656:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:372418-372485:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:374230-374447:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:375281-375363:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:377630-377767:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:378988-379140:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:379798-379879:1:exon

position:379798:1
position: 379798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:380468-380654:1:exon

LOC100221547
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100221547
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit pi isoform X1
translation: MFFRYFSYFGLCFFLPTQGSSLGHGSSLHGKGTMSLPGFENLTMGYNKYLRLYFGGEPVQIAISLDIASISSISESDMDYTATISLQQRWTDPRLVFHGNKSFTLDARLVELLWVPDTYIVESKRSFLHDVTVGNRLVRLFSNGTVLYALRITTTVACNMDLSKYPMDTQTCRLQLESWGYDENDVTFTWLRGNNSVRGIEKLRLSQYTVEHYHTLVSKSQQETGSYPRLILQFELRRNVLYFILETYVPSTLLVMLSWVSFWITLDSVPARTCIGVTTVLSMTTLMVGSRSLLSKTNCFIKAIDVYLGICFSFIFGALVEYAVAHYSSSQKCAAKVPEEGPANELTEEMEEVNITNIIKNSITSYKQKISFASIEISSNNVNCSDLTMKSHEKIKCVLRNKMRRIIGYFTIQNPGNVDHYSKLLFPLFFMVVNVFYWAYYLYF
SIO_010081: LOC100221547
subclass of: SO_0000673
so part of: LOC100221547
location: join(367155..367210,368547..368656,372418..372485,374230..374447,375281..375363,377630..377767,378988..379140,379686..379879,380468..380782)
location: region:367155-380782:1
so has part: feature:367155-367210:1:exon
so has part: feature:368547-368656:1:exon
so has part: feature:372418-372485:1:exon
so has part: feature:374230-374447:1:exon
so has part: feature:375281-375363:1:exon
so has part: feature:377630-377767:1:exon
so has part: feature:378988-379140:1:exon
so has part: feature:379686-379879:1:exon
so has part: feature:380468-380782:1:exon

XP_002188723.5
type: Protein
SIO_000068: ncbiprotein

position:367155:1
position: 367155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:380782:1
position: 380782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367155-367210:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:368547-368656:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372418-372485:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:374230-374447:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:375281-375363:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:377630-377767:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:378988-379140:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:379686-379879:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:380468-380782:1:exon

LOC100221547
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100221547
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit pi isoform X2
translation: MFFRYFSYFGLCFFLPTQGSSLGHGSSLHGKGTMSLPGFENLTMGYNKYLRLYFGGEPVQIAISLDIASISSISESDMDYTATISLQQRWTDPRLVFHGNKSFTLDARLVELLWVPDTYIVESKRSFLHDVTVGNRLVRLFSNGTVLYALRITTTVACNMDLSKYPMDTQTCRLQLESWGYDENDVTFTWLRGNNSVRGIEKLRLSQYTVEHYHTLVSKSQQETGSYPRLILQFELRRNVLYFILETYVPSTLLVMLSWVSFWITLDSVPARTCIASSLVPLWSMQWLTTAPHRSVQLKYQKRGLQMN
SIO_010081: LOC100221547
subclass of: SO_0000673
so part of: LOC100221547
location: join(367155..367210,368547..368656,372418..372485,374230..374447,375281..375363,377630..377767,378988..379140,379798..379879,380468..380486)
location: region:367155-380486:1
so has part: feature:367155-367210:1:exon
so has part: feature:368547-368656:1:exon
so has part: feature:372418-372485:1:exon
so has part: feature:374230-374447:1:exon
so has part: feature:375281-375363:1:exon
so has part: feature:377630-377767:1:exon
so has part: feature:378988-379140:1:exon
so has part: feature:379798-379879:1:exon
so has part: feature:380468-380486:1:exon

XP_030140005.3
type: Protein
SIO_000068: ncbiprotein

position:380486:1
position: 380486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367155-367210:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:368547-368656:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372418-372485:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:374230-374447:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:375281-375363:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:377630-377767:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:378988-379140:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:379798-379879:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:380468-380486:1:exon

LOC100190237
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC100190237
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 390180..400456
location: region:390180-400456:1
so has part: feature:390180-400456:1:exon
subclass of: SO_0000010

100190237
type: Gene
SIO_000068: ncbigene

position:390180:1
position: 390180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:400456:1
position: 400456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:390180-400456:1:exon

LOC100190237
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100190237
product: kazal-type serine protease inhibitor domain-containing protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 10 ESTs, 3 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 124 samples with support for all annotated introns
transcript id: XM_002188657.5
SIO_010081: LOC100190237
subclass of: SO_0000673
so part of: LOC100190237
location: join(390180..390967,396488..396648,397760..397904,399227..400456)
location: region:390180-400456:1
so has part: feature:390180-390967:1:exon
so has part: feature:396488-396648:1:exon
so has part: feature:397760-397904:1:exon
so has part: feature:399227-400456:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:390180-390967:1:exon

position:390967:1
position: 390967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:396488-396648:1:exon

position:396488:1
position: 396488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:396648:1
position: 396648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:397760-397904:1:exon

position:397760:1
position: 397760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:397904:1
position: 397904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:399227-400456:1:exon

position:399227:1
position: 399227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100190237
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100190237
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kazal-type serine protease inhibitor domain-containing protein 1
translation: MKYRMVTAVLVALVQVSENFPALYHQGWWRLLREGDSCGKCDLALCSEPKDCPAGTVLDRCGCCLECGNVEGQICDLDQGNHFYGQCGDHLECRLDADAARFGEVPEPQCVCKSQEIICGPNGKTYENICQFNKDYSAKRNISMKHKGPCESAPVISMPPQDAQNYTGNDVIFGCEVSAYPMPQLEWKKKGNKMFLPGDDTHVSVQARGGPQKYGVTGWLQIQGLKKSDEGIYICHTKNKHGATYASARLKVIDVPSPAFAFTAGSRSASYSIEYEEYYDNSDEDDEEYESGNYDNENYSE
SIO_010081: LOC100190237
subclass of: SO_0000673
so part of: LOC100190237
location: join(390511..390967,396488..396648,397760..397904,399227..399369)
location: region:390511-399369:1
so has part: feature:390511-390967:1:exon
so has part: feature:396488-396648:1:exon
so has part: feature:397760-397904:1:exon
so has part: feature:399227-399369:1:exon

XP_002188693.1
type: Protein
SIO_000068: ncbiprotein

position:390511:1
position: 390511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:399369:1
position: 399369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:390511-390967:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:396488-396648:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:397760-397904:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:399227-399369:1:exon

LOC121470670
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121470670
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(413567..414426)
location: region:413567-414426:-1
so has part: feature:413567-414426:-1:exon
subclass of: SO_0000011

121470670
type: Gene
SIO_000068: ncbigene

position:413567:-1
position: 413567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:414426:-1
position: 414426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413567-414426:-1:exon

LOC121470670
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121470670
product: uncharacterized LOC121470670
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XR_005981810.1
SIO_010081: LOC121470670
subclass of: SO_0000673
so part of: LOC121470670
location: complement(join(413567..414075,414387..414426))
location: region:413567-414426:-1
so has part: feature:414387-414426:-1:exon
so has part: feature:413567-414075:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:414387-414426:-1:exon

position:414387:-1
position: 414387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:413567-414075:-1:exon

position:414075:-1
position: 414075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115497090
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497090
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 415218..450262
location: region:415218-450262:1
so has part: feature:415218-450262:1:exon
subclass of: SO_0000010

115497090
type: Gene
SIO_000068: ncbigene

position:415218:1
position: 415218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:450262:1
position: 450262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415218-450262:1:exon

LOC115497090
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: LOC115497090
product: ran-binding protein 17, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005981806.1
SIO_010081: LOC115497090
so part of: LOC115497090
location: join(415218..417641,419436..419498,419946..420048,425230..425337,429310..429626,432734..450262)
location: region:415218-450262:1
so has part: feature:415218-417641:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:425230-425337:1:exon
so has part: feature:429310-429626:1:exon
so has part: feature:432734-450262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:415218-417641:1:exon

position:417641:1
position: 417641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:419436-419498:1:exon

position:419436:1
position: 419436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419498:1
position: 419498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:419946-420048:1:exon

position:419946:1
position: 419946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420048:1
position: 420048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:425230-425337:1:exon

position:425230:1
position: 425230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:425337:1
position: 425337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:429310-429626:1:exon

position:429310:1
position: 429310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:429626:1
position: 429626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:432734-450262:1:exon

position:432734:1
position: 432734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115497090
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: LOC115497090
product: ran-binding protein 17, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_005981805.1
SIO_010081: LOC115497090
so part of: LOC115497090
location: join(415218..417641,419436..419498,419946..420048,429310..429626,432734..450262)
location: region:415218-450262:1
so has part: feature:415218-417641:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:429310-429626:1:exon
so has part: feature:432734-450262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:415218-417641:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419436-419498:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:419946-420048:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:429310-429626:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:432734-450262:1:exon

LOC115497090
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: LOC115497090
product: ran-binding protein 17, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005981807.1
SIO_010081: LOC115497090
so part of: LOC115497090
location: join(415218..417641,419436..419498,419946..420048,429310..429626,432734..446754,449824..450262)
location: region:415218-450262:1
so has part: feature:415218-417641:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:429310-429626:1:exon
so has part: feature:432734-446754:1:exon
so has part: feature:449824-450262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:415218-417641:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419436-419498:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:419946-420048:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:429310-429626:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:432734-446754:1:exon

position:446754:1
position: 446754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:449824-450262:1:exon

position:449824:1
position: 449824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115497090
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: LOC115497090
product: ran-binding protein 17, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005981809.1
SIO_010081: LOC115497090
so part of: LOC115497090
location: join(415218..417641,419436..419498,419946..420048,429310..429626,432734..433825,449824..450262)
location: region:415218-450262:1
so has part: feature:415218-417641:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:429310-429626:1:exon
so has part: feature:432734-433825:1:exon
so has part: feature:449824-450262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:415218-417641:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419436-419498:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:419946-420048:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:429310-429626:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:432734-433825:1:exon

position:433825:1
position: 433825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:449824-450262:1:exon

LOC115497090
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: LOC115497090
product: ran-binding protein 17, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005981808.1
SIO_010081: LOC115497090
so part of: LOC115497090
location: join(415218..417641,419436..419498,419946..420048,429310..429626,432734..433583,433739..450262)
location: region:415218-450262:1
so has part: feature:415218-417641:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:429310-429626:1:exon
so has part: feature:432734-433583:1:exon
so has part: feature:433739-450262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:415218-417641:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419436-419498:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:419946-420048:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:429310-429626:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:432734-433583:1:exon

position:433583:1
position: 433583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:433739-450262:1:exon

position:433739:1
position: 433739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115497090
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: LOC115497090
product: ran-binding protein 17, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_003962663.3
SIO_010081: LOC115497090
so part of: LOC115497090
location: join(415218..415305,417552..417641,419436..419498,419946..420048,429310..429626,432734..450262)
location: region:415218-450262:1
so has part: feature:415218-415305:1:exon
so has part: feature:417552-417641:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:429310-429626:1:exon
so has part: feature:432734-450262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:415218-415305:1:exon

position:415305:1
position: 415305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:417552-417641:1:exon

position:417552:1
position: 417552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:419436-419498:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:419946-420048:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:429310-429626:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:432734-450262:1:exon

LOC115497090
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC115497090
product: ran-binding protein 17, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030283975.3
SIO_010081: LOC115497090
subclass of: SO_0000673
so part of: LOC115497090
location: join(415218..415305,419436..419498,419946..420048,449824..450262)
location: region:415218-450262:1
so has part: feature:415218-415305:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:449824-450262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:415218-415305:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419436-419498:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:419946-420048:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:449824-450262:1:exon

LOC115497090
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC115497090
product: ran-binding protein 17, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_032750857.2
SIO_010081: LOC115497090
subclass of: SO_0000673
so part of: LOC115497090
location: join(415218..415305,419436..419498,419946..420048,422097..422839)
location: region:415218-422839:1
so has part: feature:415218-415305:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:422097-422839:1:exon

position:422839:1
position: 422839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415218-415305:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419436-419498:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:419946-420048:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422097-422839:1:exon

position:422097:1
position: 422097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115497090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC115497090
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ran-binding protein 17 isoform X2
translation: MRRSEGCAARKDALRVQGIVDHCLTGMVLSELTQEMDLVDYSRPSAKPCKRVASFRDTSLKDIPMFVCSFEGGFLSLKTSK
SIO_010081: LOC115497090
subclass of: SO_0000673
so part of: LOC115497090
location: join(415255..415305,419436..419498,419946..420048,449824..449852)
location: region:415255-449852:1
so has part: feature:415255-415305:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:449824-449852:1:exon

XP_030139835.3
type: Protein
SIO_000068: ncbiprotein

position:415255:1
position: 415255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:449852:1
position: 449852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415255-415305:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419436-419498:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:419946-420048:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:449824-449852:1:exon

LOC115497090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC115497090
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ran-binding protein 17 isoform X1
translation: MRRSEGCAARKDALRVQGIVDHCLTGMVLSELTQEMDLVDYSRPSAKPCKRVASFRDTSLKDIPMFVCSFEGVFQIVSLMDAQLLQYKNEEVKLAVLWFLDQSVKAQLQHS
SIO_010081: LOC115497090
subclass of: SO_0000673
so part of: LOC115497090
location: join(415255..415305,419436..419498,419946..420048,422097..422215)
location: region:415255-422215:1
so has part: feature:415255-415305:1:exon
so has part: feature:419436-419498:1:exon
so has part: feature:419946-420048:1:exon
so has part: feature:422097-422215:1:exon

XP_032606748.2
type: Protein
SIO_000068: ncbiprotein

position:422215:1
position: 422215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415255-415305:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419436-419498:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:419946-420048:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422097-422215:1:exon

LOC115497121
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497121
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 487545..533018
location: region:487545-533018:1
so has part: feature:487545-533018:1:exon
subclass of: SO_0000011

115497121
type: Gene
SIO_000068: ncbigene

position:487545:1
position: 487545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:533018:1
position: 533018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:487545-533018:1:exon

LOC115497121
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497121
product: uncharacterized LOC115497121
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_003962701.3
SIO_010081: LOC115497121
subclass of: SO_0000673
so part of: LOC115497121
location: join(487545..491682,495135..495216,501807..502410,509926..510105,512611..512758,530917..533018)
location: region:487545-533018:1
so has part: feature:487545-491682:1:exon
so has part: feature:495135-495216:1:exon
so has part: feature:501807-502410:1:exon
so has part: feature:509926-510105:1:exon
so has part: feature:512611-512758:1:exon
so has part: feature:530917-533018:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:487545-491682:1:exon

position:491682:1
position: 491682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:495135-495216:1:exon

position:495135:1
position: 495135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:495216:1
position: 495216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:501807-502410:1:exon

position:501807:1
position: 501807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:502410:1
position: 502410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:509926-510105:1:exon

position:509926:1
position: 509926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510105:1
position: 510105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:512611-512758:1:exon

position:512611:1
position: 512611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512758:1
position: 512758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:530917-533018:1:exon

position:530917:1
position: 530917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TLX3
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: TLX3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 538300..541018
location: region:538300-541018:1
so has part: feature:538300-541018:1:exon
subclass of: SO_0000010

100222619
type: Gene
SIO_000068: ncbigene

position:538300:1
position: 538300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:541018:1
position: 541018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538300-541018:1:exon

TLX3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: TLX3
product: T cell leukemia homeobox 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030284216.3
SIO_010081: TLX3
subclass of: SO_0000673
so part of: TLX3
location: join(538300..538824,539210..539453,540035..541018)
location: region:538300-541018:1
so has part: feature:538300-538824:1:exon
so has part: feature:539210-539453:1:exon
so has part: feature:540035-541018:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:538300-538824:1:exon

position:538824:1
position: 538824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:539210-539453:1:exon

position:539210:1
position: 539210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:539453:1
position: 539453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:540035-541018:1:exon

position:540035:1
position: 540035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TLX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: TLX3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-cell leukemia homeobox protein 3
translation: MDPPRMDPPGPAQGQHQHEPISFGIDQILNSPEQDSAPPPPPRGPDGATFLGGPGGRGGAPYPALPAPFPAIAAPFEDSGSYSVNLSLAPAGVIRVPAHRPIPGAVPPPISSAIPAMPAVPSLGSLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLMLQLQHDAFQKSLNESIQPDPLCLHNSSLFALQNLQPWEEESAKIPPVTSLV
SIO_010081: TLX3
subclass of: SO_0000673
so part of: TLX3
location: join(538395..538824,539210..539453,540035..540245)
location: region:538395-540245:1
so has part: feature:538395-538824:1:exon
so has part: feature:539210-539453:1:exon
so has part: feature:540035-540245:1:exon

XP_030140076.1
type: Protein
SIO_000068: ncbiprotein

position:538395:1
position: 538395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:540245:1
position: 540245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538395-538824:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:539210-539453:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:540035-540245:1:exon

NPM1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: NPM1
note: nucleophosmin 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 574570..586292
location: region:574570-586292:1
so has part: feature:574570-586292:1:exon
subclass of: SO_0000010

100190341
type: Gene
SIO_000068: ncbigene

position:574570:1
position: 574570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:586292:1
position: 586292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574570-586292:1:exon

NPM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: NPM1
product: nucleophosmin 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 64 ESTs, 5 long SRA reads, 14 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030283601.3
SIO_010081: NPM1
subclass of: SO_0000673
so part of: NPM1
location: join(574570..574731,575445..575524,578346..578465,579247..579340,580066..580169,580652..580707,581160..581214,581941..582030,582896..582997,584883..584957,585947..586291)
location: region:574570-586291:1
so has part: feature:574570-574731:1:exon
so has part: feature:575445-575524:1:exon
so has part: feature:578346-578465:1:exon
so has part: feature:579247-579340:1:exon
so has part: feature:580066-580169:1:exon
so has part: feature:580652-580707:1:exon
so has part: feature:581160-581214:1:exon
so has part: feature:581941-582030:1:exon
so has part: feature:582896-582997:1:exon
so has part: feature:584883-584957:1:exon
so has part: feature:585947-586291:1:exon

position:586291:1
position: 586291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574570-574731:1:exon

position:574731:1
position: 574731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:575445-575524:1:exon

position:575445:1
position: 575445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575524:1
position: 575524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:578346-578465:1:exon

position:578346:1
position: 578346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:578465:1
position: 578465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:579247-579340:1:exon

position:579247:1
position: 579247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:579340:1
position: 579340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:580066-580169:1:exon

position:580066:1
position: 580066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580169:1
position: 580169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:580652-580707:1:exon

position:580652:1
position: 580652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580707:1
position: 580707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:581160-581214:1:exon

position:581160:1
position: 581160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:581214:1
position: 581214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:581941-582030:1:exon

position:581941:1
position: 581941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:582030:1
position: 582030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:582896-582997:1:exon

position:582896:1
position: 582896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:582997:1
position: 582997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:584883-584957:1:exon

position:584883:1
position: 584883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:584957:1
position: 584957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:585947-586291:1:exon

position:585947:1
position: 585947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NPM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: NPM1
product: nucleophosmin 1
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001245498.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution, 1 frameshift, 1 non-frameshifting indel compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001245498.1
SIO_010081: NPM1
subclass of: SO_0000673
so part of: NPM1
location: join(574595..574731,575445..575524,578346..578465,579247..579340,580066..580169,580652..580707,581160..581214,581941..582030,582896..582997,584883..584957,585947..586292)
location: region:574595-586292:1
so has part: feature:574595-574731:1:exon
so has part: feature:575445-575524:1:exon
so has part: feature:578346-578465:1:exon
so has part: feature:579247-579340:1:exon
so has part: feature:580066-580169:1:exon
so has part: feature:580652-580707:1:exon
so has part: feature:581160-581214:1:exon
so has part: feature:581941-582030:1:exon
so has part: feature:582896-582997:1:exon
so has part: feature:584883-584957:1:exon
so has part: feature:585947-586292:1:exon

position:574595:1
position: 574595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574595-574731:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:575445-575524:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:578346-578465:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:579247-579340:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:580066-580169:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:580652-580707:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:581160-581214:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:581941-582030:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:582896-582997:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:584883-584957:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:585947-586292:1:exon

NPM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: NPM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleophosmin isoform X1
translation: MEDSAMDMESMGPLRPQTFLFGCELKADKEFQFKVDDEENEHQLSLRTVTLGAGAKDELHIVEAEALDYEGNPTKVVLASLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVYVSGQHLVALEEEPESDEEDDDTKIVNASTKRPASGGGPKTPQKKPKLAEDDEDDDEDDDDDDEDDLEDDEEEIKAPVKKPVREVAGKNMQKAKQNGKDSKPSTPASKSKTPDSKKDKTLTPKTPKVPLSLEEIKAKMQASVDKGTTLPKLEPKFANYVKNCFRTEDQKVIQALWQWRQTL
SIO_010081: NPM1
subclass of: SO_0000673
so part of: NPM1
location: join(574668..574731,575445..575524,578346..578465,579247..579340,580066..580169,580652..580707,581160..581214,581941..582030,582896..582997,584883..584957,585947..585985)
location: region:574668-585985:1
so has part: feature:574668-574731:1:exon
so has part: feature:575445-575524:1:exon
so has part: feature:578346-578465:1:exon
so has part: feature:579247-579340:1:exon
so has part: feature:580066-580169:1:exon
so has part: feature:580652-580707:1:exon
so has part: feature:581160-581214:1:exon
so has part: feature:581941-582030:1:exon
so has part: feature:582896-582997:1:exon
so has part: feature:584883-584957:1:exon
so has part: feature:585947-585985:1:exon

XP_030139461.1
type: Protein
SIO_000068: ncbiprotein

position:574668:1
position: 574668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:585985:1
position: 585985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574668-574731:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:575445-575524:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:578346-578465:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:579247-579340:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:580066-580169:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:580652-580707:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:581160-581214:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:581941-582030:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:582896-582997:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:584883-584957:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:585947-585985:1:exon

NPM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: NPM1
inference: similar to AA sequence (same species):RefSeq:NP_001232427.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 frameshift compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: nucleophosmin
translation: MEDSAMDMESMGPLRPQTFLFGCELKADKEFQFKVDDEENEHQLSLRTVTLGAGAKDELHIVEAEALDYEGNPTKVVLASLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVYVSGQHLVALEEEPESDEEDDDTKIVNASTKRPASGGGPKTPQKKPKLAEDDEDDDEDDDDDE
SIO_010081: NPM1
subclass of: SO_0000673
so part of: NPM1
location: join(574668..574731,575445..575524,578346..578465,579247..579340,580066..580169,580652..580707,581160..581165)
location: region:574668-581165:1
so has part: feature:574668-574731:1:exon
so has part: feature:575445-575524:1:exon
so has part: feature:578346-578465:1:exon
so has part: feature:579247-579340:1:exon
so has part: feature:580066-580169:1:exon
so has part: feature:580652-580707:1:exon
so has part: feature:581160-581165:1:exon

NP_001232427.1
type: Protein
SIO_000068: ncbiprotein

position:581165:1
position: 581165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574668-574731:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:575445-575524:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:578346-578465:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:579247-579340:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:580066-580169:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:580652-580707:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:581160-581165:1:exon

FGF18
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: FGF18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 597051..662693
location: region:597051-662693:1
so has part: feature:597051-662693:1:exon
subclass of: SO_0000010

100227412
type: Gene
SIO_000068: ncbigene

position:597051:1
position: 597051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:662693:1
position: 662693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:597051-662693:1:exon

FGF18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: FGF18
product: fibroblast growth factor 18
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_030284049.3
SIO_010081: FGF18
subclass of: SO_0000673
so part of: FGF18
location: join(597051..597417,597692..597728,618606..618786,645928..646034,661664..662693)
location: region:597051-662693:1
so has part: feature:597051-597417:1:exon
so has part: feature:597692-597728:1:exon
so has part: feature:618606-618786:1:exon
so has part: feature:645928-646034:1:exon
so has part: feature:661664-662693:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:597051-597417:1:exon

position:597417:1
position: 597417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:597692-597728:1:exon

position:597692:1
position: 597692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:597728:1
position: 597728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:618606-618786:1:exon

position:618606:1
position: 618606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:618786:1
position: 618786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:645928-646034:1:exon

position:645928:1
position: 645928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:646034:1
position: 646034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:661664-662693:1:exon

position:661664:1
position: 661664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FGF18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: FGF18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fibroblast growth factor 18
translation: MYSLLSACTCLCLHFLLLCFQVQMFAAEENVDFRIHVENQTRARDDVSRKQLRLYQLYSRTSGKHIQVLGRRISAKGEDGDKYAQLLVETDTFGSQVRIKGKETDFYLCMNRKGKLVGKPDGTSKECVFIEKVLENNYTALMSAKYSGWYVGFTKKGRPRKGPKTRENQQDVHFMKRYPKGQMEIQKPFKYTTVTKRTKRIRPTNPS
SIO_010081: FGF18
subclass of: SO_0000673
so part of: FGF18
location: join(597386..597417,597692..597728,618606..618786,645928..646034,661664..661930)
location: region:597386-661930:1
so has part: feature:597386-597417:1:exon
so has part: feature:597692-597728:1:exon
so has part: feature:618606-618786:1:exon
so has part: feature:645928-646034:1:exon
so has part: feature:661664-661930:1:exon

XP_030139909.1
type: Protein
SIO_000068: ncbiprotein

position:597386:1
position: 597386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:661930:1
position: 661930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:597386-597417:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:597692-597728:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:618606-618786:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:645928-646034:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:661664-661930:1:exon

LOC115497106
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497106
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(728724..775982)
location: region:728724-775982:-1
so has part: feature:728724-775982:-1:exon
subclass of: SO_0000011

115497106
type: Gene
SIO_000068: ncbigene

position:728724:-1
position: 728724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:775982:-1
position: 775982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:728724-775982:-1:exon

LOC115497106
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497106
product: uncharacterized LOC115497106, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_003962679.3
SIO_010081: LOC115497106
subclass of: SO_0000673
so part of: LOC115497106
location: complement(join(728724..729074,751604..751667,753238..753404,775837..775981))
location: region:728724-775981:-1
so has part: feature:775837-775981:-1:exon
so has part: feature:753238-753404:-1:exon
so has part: feature:751604-751667:-1:exon
so has part: feature:728724-729074:-1:exon

position:775981:-1
position: 775981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:775837-775981:-1:exon

position:775837:-1
position: 775837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:753238-753404:-1:exon

position:753238:-1
position: 753238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:753404:-1
position: 753404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:751604-751667:-1:exon

position:751604:-1
position: 751604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:751667:-1
position: 751667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:728724-729074:-1:exon

position:729074:-1
position: 729074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115497106
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497106
product: uncharacterized LOC115497106, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_003962678.3
SIO_010081: LOC115497106
subclass of: SO_0000673
so part of: LOC115497106
location: complement(join(748582..749380,751604..751667,753238..753404,775837..775982))
location: region:748582-775982:-1
so has part: feature:775837-775982:-1:exon
so has part: feature:753238-753404:-1:exon
so has part: feature:751604-751667:-1:exon
so has part: feature:748582-749380:-1:exon

position:748582:-1
position: 748582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:775837-775982:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753238-753404:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:751604-751667:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:748582-749380:-1:exon

position:749380:-1
position: 749380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FBXW11
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(894063..961177)
location: region:894063-961177:-1
so has part: feature:894063-961177:-1:exon
subclass of: SO_0000010

100227408
type: Gene
SIO_000068: ncbigene

position:894063:-1
position: 894063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:961177:-1
position: 961177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:894063-961177:-1:exon

FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 5 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 110 samples with support for all annotated introns
transcript id: XM_030283683.3
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(894063..896411,899262..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,961024..961177))
location: region:894063-961177:-1
so has part: feature:961024-961177:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899262-899450:-1:exon
so has part: feature:894063-896411:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:961024-961177:-1:exon

position:961024:-1
position: 961024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:926864-926926:-1:exon

position:926864:-1
position: 926864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:926926:-1
position: 926926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:916018-916243:-1:exon

position:916018:-1
position: 916018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:916243:-1
position: 916243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:912765-912951:-1:exon

position:912765:-1
position: 912765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:912951:-1
position: 912951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:911851-911941:-1:exon

position:911851:-1
position: 911851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:911941:-1
position: 911941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:904560-904697:-1:exon

position:904560:-1
position: 904560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:904697:-1
position: 904697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:903928-904046:-1:exon

position:903928:-1
position: 903928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:904046:-1
position: 904046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:903148-903397:-1:exon

position:903148:-1
position: 903148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:903397:-1
position: 903397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:902087-902205:-1:exon

position:902087:-1
position: 902087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:902205:-1
position: 902205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:901477-901587:-1:exon

position:901477:-1
position: 901477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:901587:-1
position: 901587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:900872-900950:-1:exon

position:900872:-1
position: 900872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:900950:-1
position: 900950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:899262-899450:-1:exon

position:899262:-1
position: 899262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:899450:-1
position: 899450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:894063-896411:-1:exon

position:896411:-1
position: 896411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 5 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_030283679.3
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(894063..896411,899262..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,945576..945677,961024..961169))
location: region:894063-961169:-1
so has part: feature:961024-961169:-1:exon
so has part: feature:945576-945677:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899262-899450:-1:exon
so has part: feature:894063-896411:-1:exon

position:961169:-1
position: 961169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:961024-961169:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:945576-945677:-1:exon

position:945576:-1
position: 945576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:945677:-1
position: 945677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:926864-926926:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:899262-899450:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:894063-896411:-1:exon

FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 5 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 95 samples with support for all annotated introns
transcript id: XM_030283684.3
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(894063..896411,899262..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,953013..953092,961024..961147))
location: region:894063-961147:-1
so has part: feature:961024-961147:-1:exon
so has part: feature:953013-953092:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899262-899450:-1:exon
so has part: feature:894063-896411:-1:exon

position:961147:-1
position: 961147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:961024-961147:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:953013-953092:-1:exon

position:953013:-1
position: 953013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:953092:-1
position: 953092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:926864-926926:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:899262-899450:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:894063-896411:-1:exon

FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 5 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_030283681.3
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(894063..896411,899262..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,945576..945677,953013..953092,961024..961147))
location: region:894063-961147:-1
so has part: feature:961024-961147:-1:exon
so has part: feature:953013-953092:-1:exon
so has part: feature:945576-945677:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899262-899450:-1:exon
so has part: feature:894063-896411:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:961024-961147:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:953013-953092:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:945576-945677:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:926864-926926:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:899262-899450:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:894063-896411:-1:exon

FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 5 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_041718890.1
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(894063..896411,899262..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,950604..950711,953013..953092,961024..961147))
location: region:894063-961147:-1
so has part: feature:961024-961147:-1:exon
so has part: feature:953013-953092:-1:exon
so has part: feature:950604-950711:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899262-899450:-1:exon
so has part: feature:894063-896411:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:961024-961147:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:953013-953092:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:950604-950711:-1:exon

position:950604:-1
position: 950604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:950711:-1
position: 950711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:926864-926926:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:899262-899450:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:894063-896411:-1:exon

FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 5 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_030283680.3
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(894063..896411,899262..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,945576..945677,950604..950711,953013..953092,961024..961147))
location: region:894063-961147:-1
so has part: feature:961024-961147:-1:exon
so has part: feature:953013-953092:-1:exon
so has part: feature:950604-950711:-1:exon
so has part: feature:945576-945677:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899262-899450:-1:exon
so has part: feature:894063-896411:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:961024-961147:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:953013-953092:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:950604-950711:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:945576-945677:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:926864-926926:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:899262-899450:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:894063-896411:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X3
translation: MEPDSVIEDKTIELMNTSVMEDQNEDESPKKNTLWQISNGTSSVIVSRKRPSEGNYEKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPLSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(899289..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,961024..961068))
location: region:899289-961068:-1
so has part: feature:961024-961068:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899289-899450:-1:exon

XP_030139543.1
type: Protein
SIO_000068: ncbiprotein

position:899289:-1
position: 899289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:961068:-1
position: 961068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:961024-961068:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:926864-926926:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:899289-899450:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X1
translation: MEPDSVIEDKTIELMCSVPRSLWLGCSNLVESMCALRCLQSMPSVRCLQNTSVMEDQNEDESPKKNTLWQISNGTSSVIVSRKRPSEGNYEKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPLSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(899289..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,945576..945677,961024..961068))
location: region:899289-961068:-1
so has part: feature:961024-961068:-1:exon
so has part: feature:945576-945677:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899289-899450:-1:exon

XP_030139539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:961024-961068:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:945576-945677:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:926864-926926:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:899289-899450:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X2
translation: MCALRCLQSMPSVRCLQNTSVMEDQNEDESPKKNTLWQISNGTSSVIVSRKRPSEGNYEKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPLSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(899289..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,945576..945626))
location: region:899289-945626:-1
so has part: feature:945576-945626:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899289-899450:-1:exon

XP_030139540.1
type: Protein
SIO_000068: ncbiprotein

position:945626:-1
position: 945626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:945576-945626:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:926864-926926:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:899289-899450:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X2
translation: MCALRCLQSMPSVRCLQNTSVMEDQNEDESPKKNTLWQISNGTSSVIVSRKRPSEGNYEKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPLSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(899289..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926926,945576..945626))
location: region:899289-945626:-1
so has part: feature:945576-945626:-1:exon
so has part: feature:926864-926926:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899289-899450:-1:exon

XP_030139541.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:945576-945626:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:926864-926926:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:899289-899450:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X4
translation: MEDQNEDESPKKNTLWQISNGTSSVIVSRKRPSEGNYEKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPLSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(899289..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926914))
location: region:899289-926914:-1
so has part: feature:926864-926914:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899289-899450:-1:exon

XP_030139544.1
type: Protein
SIO_000068: ncbiprotein

position:926914:-1
position: 926914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:926864-926914:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:899289-899450:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X4
translation: MEDQNEDESPKKNTLWQISNGTSSVIVSRKRPSEGNYEKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPLSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(899289..899450,900872..900950,901477..901587,902087..902205,903148..903397,903928..904046,904560..904697,911851..911941,912765..912951,916018..916243,926864..926914))
location: region:899289-926914:-1
so has part: feature:926864-926914:-1:exon
so has part: feature:916018-916243:-1:exon
so has part: feature:912765-912951:-1:exon
so has part: feature:911851-911941:-1:exon
so has part: feature:904560-904697:-1:exon
so has part: feature:903928-904046:-1:exon
so has part: feature:903148-903397:-1:exon
so has part: feature:902087-902205:-1:exon
so has part: feature:901477-901587:-1:exon
so has part: feature:900872-900950:-1:exon
so has part: feature:899289-899450:-1:exon

XP_041574824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:926864-926914:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:916018-916243:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:912765-912951:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:911851-911941:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904560-904697:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:903928-904046:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:903148-903397:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:902087-902205:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:901477-901587:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:900872-900950:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:899289-899450:-1:exon

LOC121470694
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121470694
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 961967..963828
location: region:961967-963828:1
so has part: feature:961967-963828:1:exon
subclass of: SO_0000011

121470694
type: Gene
SIO_000068: ncbigene

position:961967:1
position: 961967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:963828:1
position: 963828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:961967-963828:1:exon

LOC121470694
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121470694
product: uncharacterized LOC121470694
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_005981854.1
SIO_010081: LOC121470694
subclass of: SO_0000673
so part of: LOC121470694
location: join(961967..962034,962359..963828)
location: region:961967-963828:1
so has part: feature:961967-962034:1:exon
so has part: feature:962359-963828:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:961967-962034:1:exon

position:962034:1
position: 962034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:962359-963828:1:exon

position:962359:1
position: 962359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ETF1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ETF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(969419..995382)
location: region:969419-995382:-1
so has part: feature:969419-995382:-1:exon
subclass of: SO_0000010

100220649
type: Gene
SIO_000068: ncbigene

position:969419:-1
position: 969419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:995382:-1
position: 995382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:969419-995382:-1:exon

ETF1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: ETF1
product: eukaryotic translation termination factor 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 40 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XR_005981794.1
SIO_010081: ETF1
so part of: ETF1
location: complement(join(969419..970244,970312..971576,972869..973016,974145..974209,974742..974897,975256..975385,975831..976021,976908..977046,980223..980362,981123..981298,995081..995382))
location: region:969419-995382:-1
so has part: feature:995081-995382:-1:exon
so has part: feature:981123-981298:-1:exon
so has part: feature:980223-980362:-1:exon
so has part: feature:976908-977046:-1:exon
so has part: feature:975831-976021:-1:exon
so has part: feature:975256-975385:-1:exon
so has part: feature:974742-974897:-1:exon
so has part: feature:974145-974209:-1:exon
so has part: feature:972869-973016:-1:exon
so has part: feature:970312-971576:-1:exon
so has part: feature:969419-970244:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:995081-995382:-1:exon

position:995081:-1
position: 995081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:981123-981298:-1:exon

position:981123:-1
position: 981123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:981298:-1
position: 981298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:980223-980362:-1:exon

position:980223:-1
position: 980223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:980362:-1
position: 980362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:976908-977046:-1:exon

position:976908:-1
position: 976908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:977046:-1
position: 977046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:975831-976021:-1:exon

position:975831:-1
position: 975831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:976021:-1
position: 976021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:975256-975385:-1:exon

position:975256:-1
position: 975256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:975385:-1
position: 975385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:974742-974897:-1:exon

position:974742:-1
position: 974742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:974897:-1
position: 974897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:974145-974209:-1:exon

position:974145:-1
position: 974145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:974209:-1
position: 974209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:972869-973016:-1:exon

position:972869:-1
position: 972869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:973016:-1
position: 973016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:970312-971576:-1:exon

position:970312:-1
position: 970312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:971576:-1
position: 971576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:969419-970244:-1:exon

position:970244:-1
position: 970244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ETF1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: ETF1
product: eukaryotic translation termination factor 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 40 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XR_005981795.1
SIO_010081: ETF1
so part of: ETF1
location: complement(join(969419..970244,970278..971576,972869..973016,974145..974209,974742..974897,975256..975385,975831..976021,976908..977046,980223..980362,981123..981298,995081..995382))
location: region:969419-995382:-1
so has part: feature:995081-995382:-1:exon
so has part: feature:981123-981298:-1:exon
so has part: feature:980223-980362:-1:exon
so has part: feature:976908-977046:-1:exon
so has part: feature:975831-976021:-1:exon
so has part: feature:975256-975385:-1:exon
so has part: feature:974742-974897:-1:exon
so has part: feature:974145-974209:-1:exon
so has part: feature:972869-973016:-1:exon
so has part: feature:970278-971576:-1:exon
so has part: feature:969419-970244:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:995081-995382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:981123-981298:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:980223-980362:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:976908-977046:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:975831-976021:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:975256-975385:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:974742-974897:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:974145-974209:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:972869-973016:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:970278-971576:-1:exon

position:970278:-1
position: 970278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:969419-970244:-1:exon

ETF1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 59729
gene: ETF1
product: eukaryotic translation termination factor 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 40 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 105 samples with support for all annotated introns
transcript id: XR_005981793.1
SIO_010081: ETF1
so part of: ETF1
location: complement(join(969419..970145,970179..971576,972869..973016,974145..974209,974742..974897,975256..975385,975831..976021,976908..977046,980223..980362,981123..981298,995081..995382))
location: region:969419-995382:-1
so has part: feature:995081-995382:-1:exon
so has part: feature:981123-981298:-1:exon
so has part: feature:980223-980362:-1:exon
so has part: feature:976908-977046:-1:exon
so has part: feature:975831-976021:-1:exon
so has part: feature:975256-975385:-1:exon
so has part: feature:974742-974897:-1:exon
so has part: feature:974145-974209:-1:exon
so has part: feature:972869-973016:-1:exon
so has part: feature:970179-971576:-1:exon
so has part: feature:969419-970145:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:995081-995382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:981123-981298:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:980223-980362:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:976908-977046:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:975831-976021:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:975256-975385:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:974742-974897:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:974145-974209:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:972869-973016:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:970179-971576:-1:exon

position:970179:-1
position: 970179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:969419-970145:-1:exon

position:970145:-1
position: 970145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ETF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ETF1
product: eukaryotic translation termination factor 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 40 ESTs, 1 long SRA read, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 157 samples with support for all annotated introns
transcript id: XM_030283785.3
SIO_010081: ETF1
subclass of: SO_0000673
so part of: ETF1
location: complement(join(969419..971576,972869..973016,974145..974209,974742..974897,975256..975385,975831..976021,976908..977046,980223..980362,981123..981298,995081..995382))
location: region:969419-995382:-1
so has part: feature:995081-995382:-1:exon
so has part: feature:981123-981298:-1:exon
so has part: feature:980223-980362:-1:exon
so has part: feature:976908-977046:-1:exon
so has part: feature:975831-976021:-1:exon
so has part: feature:975256-975385:-1:exon
so has part: feature:974742-974897:-1:exon
so has part: feature:974145-974209:-1:exon
so has part: feature:972869-973016:-1:exon
so has part: feature:969419-971576:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:995081-995382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:981123-981298:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:980223-980362:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:976908-977046:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:975831-976021:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:975256-975385:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:974742-974897:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:974145-974209:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:972869-973016:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:969419-971576:-1:exon

ETF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ETF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: eukaryotic peptide chain release factor subunit 1
translation: MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY
SIO_010081: ETF1
subclass of: SO_0000673
so part of: ETF1
location: complement(join(971494..971576,972869..973016,974145..974209,974742..974897,975256..975385,975831..976021,976908..977046,980223..980362,981123..981298,995081..995166))
location: region:971494-995166:-1
so has part: feature:995081-995166:-1:exon
so has part: feature:981123-981298:-1:exon
so has part: feature:980223-980362:-1:exon
so has part: feature:976908-977046:-1:exon
so has part: feature:975831-976021:-1:exon
so has part: feature:975256-975385:-1:exon
so has part: feature:974742-974897:-1:exon
so has part: feature:974145-974209:-1:exon
so has part: feature:972869-973016:-1:exon
so has part: feature:971494-971576:-1:exon

XP_030139645.1
type: Protein
SIO_000068: ncbiprotein

position:971494:-1
position: 971494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:995166:-1
position: 995166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:995081-995166:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:981123-981298:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:980223-980362:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:976908-977046:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:975831-976021:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:975256-975385:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:974742-974897:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:974145-974209:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:972869-973016:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:971494-971576:-1:exon

HSPA9
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HSPA9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(996484..1018328)
location: region:996484-1018328:-1
so has part: feature:996484-1018328:-1:exon
subclass of: SO_0000010

100226431
type: Gene
SIO_000068: ncbigene

position:996484:-1
position: 996484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1018328:-1
position: 1018328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:996484-1018328:-1:exon

HSPA9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HSPA9
product: heat shock protein family A (Hsp70) member 9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 ESTs, 3 long SRA reads, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 148 samples with support for all annotated introns
transcript id: XM_030283748.3
SIO_010081: HSPA9
subclass of: SO_0000673
so part of: HSPA9
location: complement(join(996484..997204,997983..998123,999873..999965,1001436..1001530,1003834..1003951,1005063..1005167,1005929..1006156,1008424..1008633,1010268..1010360,1010985..1011147,1011929..1012035,1012121..1012194,1013837..1013961,1014622..1014803,1014890..1014977,1016280..1016338,1018198..1018328))
location: region:996484-1018328:-1
so has part: feature:1018198-1018328:-1:exon
so has part: feature:1016280-1016338:-1:exon
so has part: feature:1014890-1014977:-1:exon
so has part: feature:1014622-1014803:-1:exon
so has part: feature:1013837-1013961:-1:exon
so has part: feature:1012121-1012194:-1:exon
so has part: feature:1011929-1012035:-1:exon
so has part: feature:1010985-1011147:-1:exon
so has part: feature:1010268-1010360:-1:exon
so has part: feature:1008424-1008633:-1:exon
so has part: feature:1005929-1006156:-1:exon
so has part: feature:1005063-1005167:-1:exon
so has part: feature:1003834-1003951:-1:exon
so has part: feature:1001436-1001530:-1:exon
so has part: feature:999873-999965:-1:exon
so has part: feature:997983-998123:-1:exon
so has part: feature:996484-997204:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1018198-1018328:-1:exon

position:1018198:-1
position: 1018198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1016280-1016338:-1:exon

position:1016280:-1
position: 1016280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1016338:-1
position: 1016338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1014890-1014977:-1:exon

position:1014890:-1
position: 1014890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1014977:-1
position: 1014977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1014622-1014803:-1:exon

position:1014622:-1
position: 1014622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1014803:-1
position: 1014803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1013837-1013961:-1:exon

position:1013837:-1
position: 1013837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1013961:-1
position: 1013961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1012121-1012194:-1:exon

position:1012121:-1
position: 1012121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1012194:-1
position: 1012194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1011929-1012035:-1:exon

position:1011929:-1
position: 1011929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1012035:-1
position: 1012035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1010985-1011147:-1:exon

position:1010985:-1
position: 1010985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1011147:-1
position: 1011147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1010268-1010360:-1:exon

position:1010268:-1
position: 1010268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1010360:-1
position: 1010360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1008424-1008633:-1:exon

position:1008424:-1
position: 1008424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1008633:-1
position: 1008633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1005929-1006156:-1:exon

position:1005929:-1
position: 1005929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1006156:-1
position: 1006156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1005063-1005167:-1:exon

position:1005063:-1
position: 1005063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1005167:-1
position: 1005167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1003834-1003951:-1:exon

position:1003834:-1
position: 1003834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1003951:-1
position: 1003951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1001436-1001530:-1:exon

position:1001436:-1
position: 1001436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1001530:-1
position: 1001530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:999873-999965:-1:exon

position:999873:-1
position: 999873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:999965:-1
position: 999965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:997983-998123:-1:exon

position:997983:-1
position: 997983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:998123:-1
position: 998123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:996484-997204:-1:exon

position:997204:-1
position: 997204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HSPA9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: HSPA9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: stress-70 protein, mitochondrial
translation: MLSASRLPLLLPRAAPAPPARPAQTFWNGLSQNVLRAASSRKYASEAIKGAVIGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTAEGERLVGMPAKRQAVTNPHNTFYATKRLIGRRFDDAEVKKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHAAKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKSEDKVIAVYDLGGGTFDISVLEIQKGVFEVKSTNGDTFLGGEDFDQALLQYIVKEFKRETGVDLTKDNMALQRVREASEKAKCELSSSVQTDINLPYLTMDASGPKHLNMKLSRAQFEGIVADLIKRTVAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQELFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMASDNKLLGQFTLVGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDEIENMVKNAEKYAEEDRRRKERVEAVNMAEGIIHDTESKMEEFKDQLPADECNKLKEEIAKMRELLARKDSETGENIRQAATSLQQASLKLFEMAYKKMASEREGSGSPGDQKEEKQ
SIO_010081: HSPA9
subclass of: SO_0000673
so part of: HSPA9
location: complement(join(997145..997204,997983..998123,999873..999965,1001436..1001530,1003834..1003951,1005063..1005167,1005929..1006156,1008424..1008633,1010268..1010360,1010985..1011147,1011929..1012035,1012121..1012194,1013837..1013961,1014622..1014803,1014890..1014977,1016280..1016338,1018198..1018269))
location: region:997145-1018269:-1
so has part: feature:1018198-1018269:-1:exon
so has part: feature:1016280-1016338:-1:exon
so has part: feature:1014890-1014977:-1:exon
so has part: feature:1014622-1014803:-1:exon
so has part: feature:1013837-1013961:-1:exon
so has part: feature:1012121-1012194:-1:exon
so has part: feature:1011929-1012035:-1:exon
so has part: feature:1010985-1011147:-1:exon
so has part: feature:1010268-1010360:-1:exon
so has part: feature:1008424-1008633:-1:exon
so has part: feature:1005929-1006156:-1:exon
so has part: feature:1005063-1005167:-1:exon
so has part: feature:1003834-1003951:-1:exon
so has part: feature:1001436-1001530:-1:exon
so has part: feature:999873-999965:-1:exon
so has part: feature:997983-998123:-1:exon
so has part: feature:997145-997204:-1:exon

XP_030139608.3
type: Protein
SIO_000068: ncbiprotein

position:997145:-1
position: 997145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1018269:-1
position: 1018269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1018198-1018269:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1016280-1016338:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1014890-1014977:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1014622-1014803:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1013837-1013961:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1012121-1012194:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1011929-1012035:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1010985-1011147:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1010268-1010360:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1008424-1008633:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1005929-1006156:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1005063-1005167:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1003834-1003951:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1001436-1001530:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:999873-999965:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:997983-998123:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:997145-997204:-1:exon

LOC115497170
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497170
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1004508..1004576)
location: region:1004508-1004576:-1
so has part: feature:1004508-1004576:-1:exon
subclass of: SO_0000578

115497170
type: Gene
SIO_000068: ncbigene

position:1004508:-1
position: 1004508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1004576:-1
position: 1004576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1004508-1004576:-1:exon

LOC115497170
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: snoRNA
gene: LOC115497170
product: small nucleolar RNA SNORD63
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00154
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003962741.3
SIO_010081: LOC115497170
subclass of: SO_0000673
so part of: LOC115497170
location: complement(1004508..1004576)
location: region:1004508-1004576:-1
so has part: feature:1004508-1004576:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1004508-1004576:-1:exon

LOC115497171
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497171
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1005614..1005685)
location: region:1005614-1005685:-1
so has part: feature:1005614-1005685:-1:exon
subclass of: SO_0000578

115497171
type: Gene
SIO_000068: ncbigene

position:1005614:-1
position: 1005614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1005685:-1
position: 1005685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1005614-1005685:-1:exon

LOC115497171
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: snoRNA
gene: LOC115497171
product: small nucleolar RNA SNORD63
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00154
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003962742.3
SIO_010081: LOC115497171
subclass of: SO_0000673
so part of: LOC115497171
location: complement(1005614..1005685)
location: region:1005614-1005685:-1
so has part: feature:1005614-1005685:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1005614-1005685:-1:exon

LOC116808909
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC116808909
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1024854..1032700
location: region:1024854-1032700:1
so has part: feature:1024854-1032700:1:exon
subclass of: SO_0000011

116808909
type: Gene
SIO_000068: ncbigene

position:1024854:1
position: 1024854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1032700:1
position: 1032700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1024854-1032700:1:exon

LOC116808909
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC116808909
product: uncharacterized LOC116808909, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XR_005981820.1
SIO_010081: LOC116808909
subclass of: SO_0000673
so part of: LOC116808909
location: join(1024854..1025041,1025608..1027609,1027866..1032700)
location: region:1024854-1032700:1
so has part: feature:1024854-1025041:1:exon
so has part: feature:1025608-1027609:1:exon
so has part: feature:1027866-1032700:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1024854-1025041:1:exon

position:1025041:1
position: 1025041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1025608-1027609:1:exon

position:1025608:1
position: 1025608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1027609:1
position: 1027609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1027866-1032700:1:exon

position:1027866:1
position: 1027866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116808909
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC116808909
product: uncharacterized LOC116808909, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XR_004369183.2
SIO_010081: LOC116808909
subclass of: SO_0000673
so part of: LOC116808909
location: join(1025060..1027609,1027866..1032044,1032518..1032700)
location: region:1025060-1032700:1
so has part: feature:1025060-1027609:1:exon
so has part: feature:1027866-1032044:1:exon
so has part: feature:1032518-1032700:1:exon

position:1025060:1
position: 1025060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025060-1027609:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1027866-1032044:1:exon

position:1032044:1
position: 1032044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1032518-1032700:1:exon

position:1032518:1
position: 1032518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116808909
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC116808909
product: uncharacterized LOC116808909, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_004369181.2
SIO_010081: LOC116808909
subclass of: SO_0000673
so part of: LOC116808909
location: join(1025060..1027609,1027866..1031818,1031905..1032700)
location: region:1025060-1032700:1
so has part: feature:1025060-1027609:1:exon
so has part: feature:1027866-1031818:1:exon
so has part: feature:1031905-1032700:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1025060-1027609:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1027866-1031818:1:exon

position:1031818:1
position: 1031818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1031905-1032700:1:exon

position:1031905:1
position: 1031905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116808909
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC116808909
product: uncharacterized LOC116808909, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_004369184.2
SIO_010081: LOC116808909
subclass of: SO_0000673
so part of: LOC116808909
location: join(1025066..1027609,1027866..1028031,1029341..1032700)
location: region:1025066-1032700:1
so has part: feature:1025066-1027609:1:exon
so has part: feature:1027866-1028031:1:exon
so has part: feature:1029341-1032700:1:exon

position:1025066:1
position: 1025066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025066-1027609:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1027866-1028031:1:exon

position:1028031:1
position: 1028031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1029341-1032700:1:exon

position:1029341:1
position: 1029341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121470674
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121470674
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1122829..1137720)
location: region:1122829-1137720:-1
so has part: feature:1122829-1137720:-1:exon
subclass of: SO_0000011

121470674
type: Gene
SIO_000068: ncbigene

position:1122829:-1
position: 1122829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1137720:-1
position: 1137720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1122829-1137720:-1:exon

LOC121470674
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121470674
product: uncharacterized LOC121470674, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005981818.1
SIO_010081: LOC121470674
subclass of: SO_0000673
so part of: LOC121470674
location: complement(join(1122829..1122898,1122971..1131896,1137679..1137720))
location: region:1122829-1137720:-1
so has part: feature:1137679-1137720:-1:exon
so has part: feature:1122971-1131896:-1:exon
so has part: feature:1122829-1122898:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1137679-1137720:-1:exon

position:1137679:-1
position: 1137679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1122971-1131896:-1:exon

position:1122971:-1
position: 1122971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1131896:-1
position: 1131896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1122829-1122898:-1:exon

position:1122898:-1
position: 1122898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121470674
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121470674
product: uncharacterized LOC121470674, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_005981817.1
SIO_010081: LOC121470674
subclass of: SO_0000673
so part of: LOC121470674
location: complement(join(1122829..1122898,1122971..1131896,1136386..1136572))
location: region:1122829-1136572:-1
so has part: feature:1136386-1136572:-1:exon
so has part: feature:1122971-1131896:-1:exon
so has part: feature:1122829-1122898:-1:exon

position:1136572:-1
position: 1136572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1136386-1136572:-1:exon

position:1136386:-1
position: 1136386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1122971-1131896:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1122829-1122898:-1:exon

CTNNA1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: CTNNA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1137730..1253908
location: region:1137730-1253908:1
so has part: feature:1137730-1253908:1:exon
subclass of: SO_0000010

100219688
type: Gene
SIO_000068: ncbigene

position:1137730:1
position: 1137730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1253908:1
position: 1253908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1137730-1253908:1:exon

CTNNA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: CTNNA1
product: catenin alpha 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_030283951.3
SIO_010081: CTNNA1
subclass of: SO_0000673
so part of: CTNNA1
location: join(1137730..1137853,1153587..1153693,1155516..1155711,1162385..1162551,1163321..1163440,1165234..1165500,1168483..1168686,1205497..1205577,1206355..1206507,1221850..1221942,1232587..1232743,1237829..1238029,1239083..1239234,1241875..1241985,1243454..1243635,1244374..1244479,1249569..1249746,1250460..1252663)
location: region:1137730-1252663:1
so has part: feature:1137730-1137853:1:exon
so has part: feature:1153587-1153693:1:exon
so has part: feature:1155516-1155711:1:exon
so has part: feature:1162385-1162551:1:exon
so has part: feature:1163321-1163440:1:exon
so has part: feature:1165234-1165500:1:exon
so has part: feature:1168483-1168686:1:exon
so has part: feature:1205497-1205577:1:exon
so has part: feature:1206355-1206507:1:exon
so has part: feature:1221850-1221942:1:exon
so has part: feature:1232587-1232743:1:exon
so has part: feature:1237829-1238029:1:exon
so has part: feature:1239083-1239234:1:exon
so has part: feature:1241875-1241985:1:exon
so has part: feature:1243454-1243635:1:exon
so has part: feature:1244374-1244479:1:exon
so has part: feature:1249569-1249746:1:exon
so has part: feature:1250460-1252663:1:exon

position:1252663:1
position: 1252663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1137730-1137853:1:exon

position:1137853:1
position: 1137853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1153587-1153693:1:exon

position:1153587:1
position: 1153587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1153693:1
position: 1153693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1155516-1155711:1:exon

position:1155516:1
position: 1155516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1155711:1
position: 1155711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1162385-1162551:1:exon

position:1162385:1
position: 1162385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1162551:1
position: 1162551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1163321-1163440:1:exon

position:1163321:1
position: 1163321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1163440:1
position: 1163440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1165234-1165500:1:exon

position:1165234:1
position: 1165234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1165500:1
position: 1165500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1168483-1168686:1:exon

position:1168483:1
position: 1168483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1168686:1
position: 1168686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1205497-1205577:1:exon

position:1205497:1
position: 1205497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1205577:1
position: 1205577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1206355-1206507:1:exon

position:1206355:1
position: 1206355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1206507:1
position: 1206507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1221850-1221942:1:exon

position:1221850:1
position: 1221850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1221942:1
position: 1221942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1232587-1232743:1:exon

position:1232587:1
position: 1232587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1232743:1
position: 1232743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1237829-1238029:1:exon

position:1237829:1
position: 1237829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1238029:1
position: 1238029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1239083-1239234:1:exon

position:1239083:1
position: 1239083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1239234:1
position: 1239234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1241875-1241985:1:exon

position:1241875:1
position: 1241875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1241985:1
position: 1241985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1243454-1243635:1:exon

position:1243454:1
position: 1243454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1243635:1
position: 1243635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1244374-1244479:1:exon

position:1244374:1
position: 1244374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1244479:1
position: 1244479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1249569-1249746:1:exon

position:1249569:1
position: 1249569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1249746:1
position: 1249746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1250460-1252663:1:exon

position:1250460:1
position: 1250460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CTNNA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: CTNNA1
product: catenin alpha 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 ESTs, 13 long SRA reads, 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
transcript id: XM_030283950.3
SIO_010081: CTNNA1
subclass of: SO_0000673
so part of: CTNNA1
location: join(1137731..1137853,1153587..1153693,1155516..1155711,1162385..1162551,1163321..1163440,1165234..1165500,1168483..1168686,1205497..1205577,1206355..1206507,1221850..1221942,1232587..1232743,1237829..1238029,1239083..1239234,1241875..1241985,1243454..1243635,1244374..1244479,1249569..1249703,1252773..1253908)
location: region:1137731-1253908:1
so has part: feature:1137731-1137853:1:exon
so has part: feature:1153587-1153693:1:exon
so has part: feature:1155516-1155711:1:exon
so has part: feature:1162385-1162551:1:exon
so has part: feature:1163321-1163440:1:exon
so has part: feature:1165234-1165500:1:exon
so has part: feature:1168483-1168686:1:exon
so has part: feature:1205497-1205577:1:exon
so has part: feature:1206355-1206507:1:exon
so has part: feature:1221850-1221942:1:exon
so has part: feature:1232587-1232743:1:exon
so has part: feature:1237829-1238029:1:exon
so has part: feature:1239083-1239234:1:exon
so has part: feature:1241875-1241985:1:exon
so has part: feature:1243454-1243635:1:exon
so has part: feature:1244374-1244479:1:exon
so has part: feature:1249569-1249703:1:exon
so has part: feature:1252773-1253908:1:exon

position:1137731:1
position: 1137731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1137731-1137853:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1153587-1153693:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1155516-1155711:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1162385-1162551:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1163321-1163440:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1165234-1165500:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1168483-1168686:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1205497-1205577:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1206355-1206507:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1221850-1221942:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1232587-1232743:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1237829-1238029:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1239083-1239234:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1241875-1241985:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1243454-1243635:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1244374-1244479:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1249569-1249703:1:exon

position:1249703:1
position: 1249703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1252773-1253908:1:exon

position:1252773:1
position: 1252773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CTNNA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: CTNNA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin alpha-1 isoform X1
translation: MTAVTAANVNFKWDPKSLEIRTLAVERLLEPLVTQVTTLVNTSNKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAKESQFLKEELVAAVEDVRKQGDLMKSASGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGTEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVSGISNAAQATASDDAAQQQGGGGELAYALNNFDKQIIVDPSTFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWERQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRTPEELDDSDFETEDFDVRSRTSIQTEDDQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVASTKYQKSQGMASLNLPAVSWKMKAPEKKPLVKREKQDETQTKIKRASQKKHVNPVQALSEFKAMESI
SIO_010081: CTNNA1
subclass of: SO_0000673
so part of: CTNNA1
location: join(1153589..1153693,1155516..1155711,1162385..1162551,1163321..1163440,1165234..1165500,1168483..1168686,1205497..1205577,1206355..1206507,1221850..1221942,1232587..1232743,1237829..1238029,1239083..1239234,1241875..1241985,1243454..1243635,1244374..1244479,1249569..1249703,1252773..1253060)
location: region:1153589-1253060:1
so has part: feature:1153589-1153693:1:exon
so has part: feature:1155516-1155711:1:exon
so has part: feature:1162385-1162551:1:exon
so has part: feature:1163321-1163440:1:exon
so has part: feature:1165234-1165500:1:exon
so has part: feature:1168483-1168686:1:exon
so has part: feature:1205497-1205577:1:exon
so has part: feature:1206355-1206507:1:exon
so has part: feature:1221850-1221942:1:exon
so has part: feature:1232587-1232743:1:exon
so has part: feature:1237829-1238029:1:exon
so has part: feature:1239083-1239234:1:exon
so has part: feature:1241875-1241985:1:exon
so has part: feature:1243454-1243635:1:exon
so has part: feature:1244374-1244479:1:exon
so has part: feature:1249569-1249703:1:exon
so has part: feature:1252773-1253060:1:exon

XP_030139810.1
type: Protein
SIO_000068: ncbiprotein

position:1153589:1
position: 1153589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1253060:1
position: 1253060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1153589-1153693:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1155516-1155711:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1162385-1162551:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1163321-1163440:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1165234-1165500:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1168483-1168686:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1205497-1205577:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1206355-1206507:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1221850-1221942:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1232587-1232743:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1237829-1238029:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1239083-1239234:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1241875-1241985:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1243454-1243635:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1244374-1244479:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1249569-1249703:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1252773-1253060:1:exon

CTNNA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: CTNNA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin alpha-1 isoform X2
translation: MTAVTAANVNFKWDPKSLEIRTLAVERLLEPLVTQVTTLVNTSNKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAKESQFLKEELVAAVEDVRKQGDLMKSASGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGTEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVSGISNAAQATASDDAAQQQGGGGELAYALNNFDKQIIVDPSTFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWERQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRTPEELDDSDFETEDFDVRSRTSIQTEDDQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELVVSGVRMAHGCSGSFAPPGKGHCTLSFCVKHLRTEAGDAGAISLLNSVCRQIHFTSV
SIO_010081: CTNNA1
subclass of: SO_0000673
so part of: CTNNA1
location: join(1153589..1153693,1155516..1155711,1162385..1162551,1163321..1163440,1165234..1165500,1168483..1168686,1205497..1205577,1206355..1206507,1221850..1221942,1232587..1232743,1237829..1238029,1239083..1239234,1241875..1241985,1243454..1243635,1244374..1244479,1249569..1249746,1250460..1250578)
location: region:1153589-1250578:1
so has part: feature:1153589-1153693:1:exon
so has part: feature:1155516-1155711:1:exon
so has part: feature:1162385-1162551:1:exon
so has part: feature:1163321-1163440:1:exon
so has part: feature:1165234-1165500:1:exon
so has part: feature:1168483-1168686:1:exon
so has part: feature:1205497-1205577:1:exon
so has part: feature:1206355-1206507:1:exon
so has part: feature:1221850-1221942:1:exon
so has part: feature:1232587-1232743:1:exon
so has part: feature:1237829-1238029:1:exon
so has part: feature:1239083-1239234:1:exon
so has part: feature:1241875-1241985:1:exon
so has part: feature:1243454-1243635:1:exon
so has part: feature:1244374-1244479:1:exon
so has part: feature:1249569-1249746:1:exon
so has part: feature:1250460-1250578:1:exon

XP_030139811.3
type: Protein
SIO_000068: ncbiprotein

position:1250578:1
position: 1250578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1153589-1153693:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1155516-1155711:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1162385-1162551:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1163321-1163440:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1165234-1165500:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1168483-1168686:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1205497-1205577:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1206355-1206507:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1221850-1221942:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1232587-1232743:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1237829-1238029:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1239083-1239234:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1241875-1241985:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1243454-1243635:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1244374-1244479:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1249569-1249746:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1250460-1250578:1:exon

LRRTM2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LRRTM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1190749..1198136)
location: region:1190749-1198136:-1
so has part: feature:1190749-1198136:-1:exon
subclass of: SO_0000010

101233037
type: Gene
SIO_000068: ncbigene

position:1190749:-1
position: 1190749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1198136:-1
position: 1198136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1190749-1198136:-1:exon

LRRTM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LRRTM2
product: leucine rich repeat transmembrane neuronal 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 90 samples with support for all annotated introns
transcript id: XM_012576146.4
SIO_010081: LRRTM2
subclass of: SO_0000673
so part of: LRRTM2
location: complement(join(1190749..1196942,1197730..1198136))
location: region:1190749-1198136:-1
so has part: feature:1197730-1198136:-1:exon
so has part: feature:1190749-1196942:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1197730-1198136:-1:exon

position:1197730:-1
position: 1197730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1190749-1196942:-1:exon

position:1196942:-1
position: 1196942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRTM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LRRTM2
product: leucine rich repeat transmembrane neuronal 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 107 samples with support for all annotated introns
transcript id: XM_004176397.5
SIO_010081: LRRTM2
subclass of: SO_0000673
so part of: LRRTM2
location: complement(join(1190749..1196963,1197730..1198136))
location: region:1190749-1198136:-1
so has part: feature:1197730-1198136:-1:exon
so has part: feature:1190749-1196963:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1197730-1198136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1190749-1196963:-1:exon

position:1196963:-1
position: 1196963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRTM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LRRTM2
product: leucine rich repeat transmembrane neuronal 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 4 long SRA reads, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 111 samples with support for all annotated introns
transcript id: XM_004176396.5
SIO_010081: LRRTM2
subclass of: SO_0000673
so part of: LRRTM2
location: complement(join(1190749..1197391,1197730..1198136))
location: region:1190749-1198136:-1
so has part: feature:1197730-1198136:-1:exon
so has part: feature:1190749-1197391:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1197730-1198136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1190749-1197391:-1:exon

position:1197391:-1
position: 1197391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRTM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LRRTM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat transmembrane neuronal protein 2 isoform X3
translation: MHPPMYSKEWLFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLRELHLEHNQLTKINFAHFLRLSSLHTLFLQWNKISNLTCGMEWTWGTLAKLDLTGNEIKAIDLTVFETMPNLKTLLMDNNKLTTLDSKILSSLKSLTTVGLSGNLWECSPKICSLATWLSGFQGRWEHSILCHSPDHTQGEDILDAVYGFQLCWNLSTVVTPVATTSYTAPTTEYTKRISSSHFHVGDKEIPTTAGMVVTTEEQFPEPNNAIFTQRVITGTMALLFSFFFIIFIVFISRKCCPPTLRRIRQCSMIQNHRQLRSQTRLHMANMSDQGPYNEYEPTHEGPFIIINGYGQCKCQQLPYKECEV
SIO_010081: LRRTM2
subclass of: SO_0000673
so part of: LRRTM2
location: complement(join(1195842..1196942,1197730..1197759))
location: region:1195842-1197759:-1
so has part: feature:1197730-1197759:-1:exon
so has part: feature:1195842-1196942:-1:exon

XP_012431600.1
type: Protein
SIO_000068: ncbiprotein

position:1195842:-1
position: 1195842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1197759:-1
position: 1197759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1197730-1197759:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1195842-1196942:-1:exon

LRRTM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LRRTM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat transmembrane neuronal protein 2 isoform X2
translation: MHPPMYSKEWLSSLHPELFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLRELHLEHNQLTKINFAHFLRLSSLHTLFLQWNKISNLTCGMEWTWGTLAKLDLTGNEIKAIDLTVFETMPNLKTLLMDNNKLTTLDSKILSSLKSLTTVGLSGNLWECSPKICSLATWLSGFQGRWEHSILCHSPDHTQGEDILDAVYGFQLCWNLSTVVTPVATTSYTAPTTEYTKRISSSHFHVGDKEIPTTAGMVVTTEEQFPEPNNAIFTQRVITGTMALLFSFFFIIFIVFISRKCCPPTLRRIRQCSMIQNHRQLRSQTRLHMANMSDQGPYNEYEPTHEGPFIIINGYGQCKCQQLPYKECEV
SIO_010081: LRRTM2
subclass of: SO_0000673
so part of: LRRTM2
location: complement(join(1195842..1196963,1197730..1197759))
location: region:1195842-1197759:-1
so has part: feature:1197730-1197759:-1:exon
so has part: feature:1195842-1196963:-1:exon

XP_004176445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1197730-1197759:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1195842-1196963:-1:exon

LRRTM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LRRTM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat transmembrane neuronal protein 2 isoform X1
translation: MGLHFKWPLGARMLAALYAMSMVLKMLPALGMACPPKCRCEKLLFYCDSQGFHSVPNTTEKGSLGLSLRHNYISELERDQFASFSQLTWLHLDHNQIATVREDSFQGLYKLKELVLSSNKIFHLPNTTFSQLLNLQNLDLSFNQLSSLHPELFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLARNGFAGLIKLRELHLEHNQLTKINFAHFLRLSSLHTLFLQWNKISNLTCGMEWTWGTLAKLDLTGNEIKAIDLTVFETMPNLKTLLMDNNKLTTLDSKILSSLKSLTTVGLSGNLWECSPKICSLATWLSGFQGRWEHSILCHSPDHTQGEDILDAVYGFQLCWNLSTVVTPVATTSYTAPTTEYTKRISSSHFHVGDKEIPTTAGMVVTTEEQFPEPNNAIFTQRVITGTMALLFSFFFIIFIVFISRKCCPPTLRRIRQCSMIQNHRQLRSQTRLHMANMSDQGPYNEYEPTHEGPFIIINGYGQCKCQQLPYKECEV
SIO_010081: LRRTM2
subclass of: SO_0000673
so part of: LRRTM2
location: complement(join(1195842..1197391,1197730..1197733))
location: region:1195842-1197733:-1
so has part: feature:1197730-1197733:-1:exon
so has part: feature:1195842-1197391:-1:exon

XP_004176444.1
type: Protein
SIO_000068: ncbiprotein

position:1197733:-1
position: 1197733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1197730-1197733:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1195842-1197391:-1:exon

CTNNA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: CTNNA1
product: catenin alpha 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 ESTs, 1 long SRA read, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
transcript id: XM_012576136.4
SIO_010081: CTNNA1
subclass of: SO_0000673
so part of: CTNNA1
location: join(1198230..1198528,1205497..1205577,1206355..1206507,1221850..1221942,1232587..1232743,1237829..1238029,1239083..1239234,1241875..1241985,1243454..1243635,1244374..1244479,1249569..1249703,1252773..1253908)
location: region:1198230-1253908:1
so has part: feature:1198230-1198528:1:exon
so has part: feature:1205497-1205577:1:exon
so has part: feature:1206355-1206507:1:exon
so has part: feature:1221850-1221942:1:exon
so has part: feature:1232587-1232743:1:exon
so has part: feature:1237829-1238029:1:exon
so has part: feature:1239083-1239234:1:exon
so has part: feature:1241875-1241985:1:exon
so has part: feature:1243454-1243635:1:exon
so has part: feature:1244374-1244479:1:exon
so has part: feature:1249569-1249703:1:exon
so has part: feature:1252773-1253908:1:exon

position:1198230:1
position: 1198230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1198230-1198528:1:exon

position:1198528:1
position: 1198528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1205497-1205577:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1206355-1206507:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1221850-1221942:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1232587-1232743:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1237829-1238029:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1239083-1239234:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1241875-1241985:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1243454-1243635:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1244374-1244479:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1249569-1249703:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1252773-1253908:1:exon

CTNNA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: CTNNA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin alpha-1 isoform X3
translation: MEAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWERQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRTPEELDDSDFETEDFDVRSRTSIQTEDDQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVASTKYQKSQGMASLNLPAVSWKMKAPEKKPLVKREKQDETQTKIKRASQKKHVNPVQALSEFKAMESI
SIO_010081: CTNNA1
subclass of: SO_0000673
so part of: CTNNA1
location: join(1198523..1198528,1205497..1205577,1206355..1206507,1221850..1221942,1232587..1232743,1237829..1238029,1239083..1239234,1241875..1241985,1243454..1243635,1244374..1244479,1249569..1249703,1252773..1253060)
location: region:1198523-1253060:1
so has part: feature:1198523-1198528:1:exon
so has part: feature:1205497-1205577:1:exon
so has part: feature:1206355-1206507:1:exon
so has part: feature:1221850-1221942:1:exon
so has part: feature:1232587-1232743:1:exon
so has part: feature:1237829-1238029:1:exon
so has part: feature:1239083-1239234:1:exon
so has part: feature:1241875-1241985:1:exon
so has part: feature:1243454-1243635:1:exon
so has part: feature:1244374-1244479:1:exon
so has part: feature:1249569-1249703:1:exon
so has part: feature:1252773-1253060:1:exon

XP_012431590.1
type: Protein
SIO_000068: ncbiprotein

position:1198523:1
position: 1198523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1198523-1198528:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1205497-1205577:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1206355-1206507:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1221850-1221942:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1232587-1232743:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1237829-1238029:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1239083-1239234:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1241875-1241985:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1243454-1243635:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1244374-1244479:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1249569-1249703:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1252773-1253060:1:exon

SIL1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SIL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1258300..1349723)
location: region:1258300-1349723:-1
so has part: feature:1258300-1349723:-1:exon
subclass of: SO_0000010

100232187
type: Gene
SIO_000068: ncbigene

position:1258300:-1
position: 1258300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1349723:-1
position: 1349723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1258300-1349723:-1:exon

SIL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SIL1
product: SIL1 nucleotide exchange factor, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 3 long SRA reads, 7 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_030283955.3
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258300..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328774,1345399..1345536,1349648..1349723))
location: region:1258300-1349723:-1
so has part: feature:1349648-1349723:-1:exon
so has part: feature:1345399-1345536:-1:exon
so has part: feature:1328666-1328774:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258300-1258756:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1349648-1349723:-1:exon

position:1349648:-1
position: 1349648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1345399-1345536:-1:exon

position:1345399:-1
position: 1345399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1345536:-1
position: 1345536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1328666-1328774:-1:exon

position:1328666:-1
position: 1328666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1328774:-1
position: 1328774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1326323-1326458:-1:exon

position:1326323:-1
position: 1326323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1326458:-1
position: 1326458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1301553-1301673:-1:exon

position:1301553:-1
position: 1301553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1301673:-1
position: 1301673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1297894-1297990:-1:exon

position:1297894:-1
position: 1297894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1297990:-1
position: 1297990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1295516-1295707:-1:exon

position:1295516:-1
position: 1295516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1295707:-1
position: 1295707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1290908-1291029:-1:exon

position:1290908:-1
position: 1290908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1291029:-1
position: 1291029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1263050-1263146:-1:exon

position:1263050:-1
position: 1263050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1263146:-1
position: 1263146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1260447-1260611:-1:exon

position:1260447:-1
position: 1260447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1260611:-1
position: 1260611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1258300-1258756:-1:exon

position:1258756:-1
position: 1258756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SIL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SIL1
product: SIL1 nucleotide exchange factor, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 long SRA read, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_030283959.3
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258300..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328774,1349648..1349694))
location: region:1258300-1349694:-1
so has part: feature:1349648-1349694:-1:exon
so has part: feature:1328666-1328774:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258300-1258756:-1:exon

position:1349694:-1
position: 1349694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1349648-1349694:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1328666-1328774:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1258300-1258756:-1:exon

SIL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SIL1
product: SIL1 nucleotide exchange factor, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 2 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_041718948.1
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258300..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328774,1345399..1345536,1349483..1349641))
location: region:1258300-1349641:-1
so has part: feature:1349483-1349641:-1:exon
so has part: feature:1345399-1345536:-1:exon
so has part: feature:1328666-1328774:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258300-1258756:-1:exon

position:1349641:-1
position: 1349641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1349483-1349641:-1:exon

position:1349483:-1
position: 1349483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1345399-1345536:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1328666-1328774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1258300-1258756:-1:exon

SIL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SIL1
product: SIL1 nucleotide exchange factor, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_030283957.3
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258300..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328774,1349271..1349641))
location: region:1258300-1349641:-1
so has part: feature:1349271-1349641:-1:exon
so has part: feature:1328666-1328774:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258300-1258756:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1349271-1349641:-1:exon

position:1349271:-1
position: 1349271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1328666-1328774:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1258300-1258756:-1:exon

SIL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SIL1
product: SIL1 nucleotide exchange factor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 2 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_030283954.3
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258300..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328774,1345399..1345536,1349271..1349641))
location: region:1258300-1349641:-1
so has part: feature:1349271-1349641:-1:exon
so has part: feature:1345399-1345536:-1:exon
so has part: feature:1328666-1328774:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258300-1258756:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1349271-1349641:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1345399-1345536:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1328666-1328774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1258300-1258756:-1:exon

SIL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SIL1
product: SIL1 nucleotide exchange factor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_030283953.3
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258300..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328774,1343756..1343774))
location: region:1258300-1343774:-1
so has part: feature:1343756-1343774:-1:exon
so has part: feature:1328666-1328774:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258300-1258756:-1:exon

position:1343774:-1
position: 1343774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1343756-1343774:-1:exon

position:1343756:-1
position: 1343756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1328666-1328774:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1258300-1258756:-1:exon

SIL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SIL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleotide exchange factor SIL1
translation: MSPWAGLLSTTARVSLLLLLGSVLFSCSSHRAPEFALTKIEESDMKDDSGKELGTEDDADPEDLEVFYPTDQWQTLRPGQAVPAGSHVRLNLQTGEREAKLPDRENGESDTREERRRKRLGKVDVDANSFTSEELKKALAKMKESEKAERKAREEEVRKKFRPIEQLKEEFEKLNMKIETDYEIMVKLISKFNSSASTLDEKVAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSSEASLKEHAAFVLGAALSSNPKVQIEAIEGGALQKLLVILATEQPLAVRKKALFALSSMLRHFPYAQQQFLKLGGLQVLRSLFRQKGMEPLHVRVVTLLYDLIMEKMLLEDSQHGEQMEEKIQQYQQVRLVPAVVEQGWCALVPNLLAMPEHDTREKVLKLVGVLVAFCREHYRGDPALGSALSLLRSEYEELAAEEQREGDKDGYFRELLGSVNTIIQELR
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258406..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328764))
location: region:1258406-1328764:-1
so has part: feature:1328666-1328764:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258406-1258756:-1:exon

XP_030139813.3
type: Protein
SIO_000068: ncbiprotein

position:1258406:-1
position: 1258406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1328764:-1
position: 1328764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1328666-1328764:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1258406-1258756:-1:exon

SIL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SIL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleotide exchange factor SIL1
translation: MSPWAGLLSTTARVSLLLLLGSVLFSCSSHRAPEFALTKIEESDMKDDSGKELGTEDDADPEDLEVFYPTDQWQTLRPGQAVPAGSHVRLNLQTGEREAKLPDRENGESDTREERRRKRLGKVDVDANSFTSEELKKALAKMKESEKAERKAREEEVRKKFRPIEQLKEEFEKLNMKIETDYEIMVKLISKFNSSASTLDEKVAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSSEASLKEHAAFVLGAALSSNPKVQIEAIEGGALQKLLVILATEQPLAVRKKALFALSSMLRHFPYAQQQFLKLGGLQVLRSLFRQKGMEPLHVRVVTLLYDLIMEKMLLEDSQHGEQMEEKIQQYQQVRLVPAVVEQGWCALVPNLLAMPEHDTREKVLKLVGVLVAFCREHYRGDPALGSALSLLRSEYEELAAEEQREGDKDGYFRELLGSVNTIIQELR
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258406..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328764))
location: region:1258406-1328764:-1
so has part: feature:1328666-1328764:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258406-1258756:-1:exon

XP_030139814.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1328666-1328764:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1258406-1258756:-1:exon

SIL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SIL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleotide exchange factor SIL1
translation: MSPWAGLLSTTARVSLLLLLGSVLFSCSSHRAPEFALTKIEESDMKDDSGKELGTEDDADPEDLEVFYPTDQWQTLRPGQAVPAGSHVRLNLQTGEREAKLPDRENGESDTREERRRKRLGKVDVDANSFTSEELKKALAKMKESEKAERKAREEEVRKKFRPIEQLKEEFEKLNMKIETDYEIMVKLISKFNSSASTLDEKVAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSSEASLKEHAAFVLGAALSSNPKVQIEAIEGGALQKLLVILATEQPLAVRKKALFALSSMLRHFPYAQQQFLKLGGLQVLRSLFRQKGMEPLHVRVVTLLYDLIMEKMLLEDSQHGEQMEEKIQQYQQVRLVPAVVEQGWCALVPNLLAMPEHDTREKVLKLVGVLVAFCREHYRGDPALGSALSLLRSEYEELAAEEQREGDKDGYFRELLGSVNTIIQELR
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258406..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328764))
location: region:1258406-1328764:-1
so has part: feature:1328666-1328764:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258406-1258756:-1:exon

XP_030139819.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1328666-1328764:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1258406-1258756:-1:exon

SIL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SIL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleotide exchange factor SIL1
translation: MSPWAGLLSTTARVSLLLLLGSVLFSCSSHRAPEFALTKIEESDMKDDSGKELGTEDDADPEDLEVFYPTDQWQTLRPGQAVPAGSHVRLNLQTGEREAKLPDRENGESDTREERRRKRLGKVDVDANSFTSEELKKALAKMKESEKAERKAREEEVRKKFRPIEQLKEEFEKLNMKIETDYEIMVKLISKFNSSASTLDEKVAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSSEASLKEHAAFVLGAALSSNPKVQIEAIEGGALQKLLVILATEQPLAVRKKALFALSSMLRHFPYAQQQFLKLGGLQVLRSLFRQKGMEPLHVRVVTLLYDLIMEKMLLEDSQHGEQMEEKIQQYQQVRLVPAVVEQGWCALVPNLLAMPEHDTREKVLKLVGVLVAFCREHYRGDPALGSALSLLRSEYEELAAEEQREGDKDGYFRELLGSVNTIIQELR
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258406..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328764))
location: region:1258406-1328764:-1
so has part: feature:1328666-1328764:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258406-1258756:-1:exon

XP_030139815.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1328666-1328764:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1258406-1258756:-1:exon

SIL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SIL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleotide exchange factor SIL1
translation: MSPWAGLLSTTARVSLLLLLGSVLFSCSSHRAPEFALTKIEESDMKDDSGKELGTEDDADPEDLEVFYPTDQWQTLRPGQAVPAGSHVRLNLQTGEREAKLPDRENGESDTREERRRKRLGKVDVDANSFTSEELKKALAKMKESEKAERKAREEEVRKKFRPIEQLKEEFEKLNMKIETDYEIMVKLISKFNSSASTLDEKVAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSSEASLKEHAAFVLGAALSSNPKVQIEAIEGGALQKLLVILATEQPLAVRKKALFALSSMLRHFPYAQQQFLKLGGLQVLRSLFRQKGMEPLHVRVVTLLYDLIMEKMLLEDSQHGEQMEEKIQQYQQVRLVPAVVEQGWCALVPNLLAMPEHDTREKVLKLVGVLVAFCREHYRGDPALGSALSLLRSEYEELAAEEQREGDKDGYFRELLGSVNTIIQELR
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258406..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328764))
location: region:1258406-1328764:-1
so has part: feature:1328666-1328764:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258406-1258756:-1:exon

XP_041574882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1328666-1328764:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1258406-1258756:-1:exon

SIL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SIL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleotide exchange factor SIL1
translation: MSPWAGLLSTTARVSLLLLLGSVLFSCSSHRAPEFALTKIEESDMKDDSGKELGTEDDADPEDLEVFYPTDQWQTLRPGQAVPAGSHVRLNLQTGEREAKLPDRENGESDTREERRRKRLGKVDVDANSFTSEELKKALAKMKESEKAERKAREEEVRKKFRPIEQLKEEFEKLNMKIETDYEIMVKLISKFNSSASTLDEKVAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSSEASLKEHAAFVLGAALSSNPKVQIEAIEGGALQKLLVILATEQPLAVRKKALFALSSMLRHFPYAQQQFLKLGGLQVLRSLFRQKGMEPLHVRVVTLLYDLIMEKMLLEDSQHGEQMEEKIQQYQQVRLVPAVVEQGWCALVPNLLAMPEHDTREKVLKLVGVLVAFCREHYRGDPALGSALSLLRSEYEELAAEEQREGDKDGYFRELLGSVNTIIQELR
SIO_010081: SIL1
subclass of: SO_0000673
so part of: SIL1
location: complement(join(1258406..1258756,1260447..1260611,1263050..1263146,1290908..1291029,1295516..1295707,1297894..1297990,1301553..1301673,1326323..1326458,1328666..1328764))
location: region:1258406-1328764:-1
so has part: feature:1328666-1328764:-1:exon
so has part: feature:1326323-1326458:-1:exon
so has part: feature:1301553-1301673:-1:exon
so has part: feature:1297894-1297990:-1:exon
so has part: feature:1295516-1295707:-1:exon
so has part: feature:1290908-1291029:-1:exon
so has part: feature:1263050-1263146:-1:exon
so has part: feature:1260447-1260611:-1:exon
so has part: feature:1258406-1258756:-1:exon

XP_030139817.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1328666-1328764:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1326323-1326458:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1301553-1301673:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1297894-1297990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1295516-1295707:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1290908-1291029:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1263050-1263146:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1260447-1260611:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1258406-1258756:-1:exon

LOC101233348
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC101233348
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1362734..1365040
location: region:1362734-1365040:1
so has part: feature:1362734-1365040:1:exon
subclass of: SO_0000011

101233348
type: Gene
SIO_000068: ncbigene

position:1362734:1
position: 1362734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1365040:1
position: 1365040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1362734-1365040:1:exon

LOC101233348
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC101233348
product: uncharacterized LOC101233348
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XR_181362.5
SIO_010081: LOC101233348
subclass of: SO_0000673
so part of: LOC101233348
location: join(1362734..1363243,1363439..1363627,1364229..1365040)
location: region:1362734-1365040:1
so has part: feature:1362734-1363243:1:exon
so has part: feature:1363439-1363627:1:exon
so has part: feature:1364229-1365040:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1362734-1363243:1:exon

position:1363243:1
position: 1363243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1363439-1363627:1:exon

position:1363439:1
position: 1363439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1363627:1
position: 1363627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1364229-1365040:1:exon

position:1364229:1
position: 1364229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115497169
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497169
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 1363884..1364086
location: region:1363884-1364086:1
so has part: feature:1363884-1364086:1:exon
subclass of: SO_0000578

115497169
type: Gene
SIO_000068: ncbigene

position:1363884:1
position: 1363884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1364086:1
position: 1364086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1363884-1364086:1:exon

LOC115497169
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: snoRNA
gene: LOC115497169
product: small nucleolar RNA SNORA74
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00090
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003962740.3
SIO_010081: LOC115497169
subclass of: SO_0000673
so part of: LOC115497169
location: 1363884..1364086
location: region:1363884-1364086:1
so has part: feature:1363884-1364086:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1363884-1364086:1:exon

MATR3
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: MATR3
note: matrin 3; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 1367030..1393267
location: region:1367030-1393267:1
so has part: feature:1367030-1393267:1:exon
subclass of: SO_0000010

100232255
type: Gene
SIO_000068: ncbigene

position:1367030:1
position: 1367030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1393267:1
position: 1393267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1367030-1393267:1:exon

MATR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MATR3
product: matrin 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 ESTs, 6 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 116 samples with support for all annotated introns
transcript id: XM_030283615.3
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1367030..1367369,1380380..1380441,1380999..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1390609..1390730,1392210..1393267)
location: region:1367030-1393267:1
so has part: feature:1367030-1367369:1:exon
so has part: feature:1380380-1380441:1:exon
so has part: feature:1380999-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1390609-1390730:1:exon
so has part: feature:1392210-1393267:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1367030-1367369:1:exon

position:1367369:1
position: 1367369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1380380-1380441:1:exon

position:1380380:1
position: 1380380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1380441:1
position: 1380441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1380999-1381040:1:exon

position:1380999:1
position: 1380999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1381040:1
position: 1381040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1381290-1381393:1:exon

position:1381290:1
position: 1381290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1381393:1
position: 1381393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1382521-1382573:1:exon

position:1382521:1
position: 1382521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1382573:1
position: 1382573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1383049-1383174:1:exon

position:1383049:1
position: 1383049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1383174:1
position: 1383174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1383770-1383895:1:exon

position:1383770:1
position: 1383770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1383895:1
position: 1383895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1384081-1384251:1:exon

position:1384081:1
position: 1384081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1384251:1
position: 1384251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1385480-1385611:1:exon

position:1385480:1
position: 1385480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1385611:1
position: 1385611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1386773-1386816:1:exon

position:1386773:1
position: 1386773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1386816:1
position: 1386816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1387284-1387674:1:exon

position:1387284:1
position: 1387284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1387674:1
position: 1387674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1389626-1390022:1:exon

position:1389626:1
position: 1389626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1390022:1
position: 1390022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1390609-1390730:1:exon

position:1390609:1
position: 1390609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1390730:1
position: 1390730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1392210-1393267:1:exon

position:1392210:1
position: 1392210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MATR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MATR3
product: matrin 3
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001205256.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 3 substitutions, 3 non-frameshifting indels compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001205256.1
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1367295..1367369,1375038..1376115,1380380..1380441,1380999..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1390609..1390730,1392210..1393267)
location: region:1367295-1393267:1
so has part: feature:1367295-1367369:1:exon
so has part: feature:1375038-1376115:1:exon
so has part: feature:1380380-1380441:1:exon
so has part: feature:1380999-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1390609-1390730:1:exon
so has part: feature:1392210-1393267:1:exon

position:1367295:1
position: 1367295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1367295-1367369:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1375038-1376115:1:exon

position:1375038:1
position: 1375038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1376115:1
position: 1376115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1380380-1380441:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1380999-1381040:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1381290-1381393:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1382521-1382573:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1383049-1383174:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1383770-1383895:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1384081-1384251:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1385480-1385611:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1386773-1386816:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1387284-1387674:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1389626-1390022:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1390609-1390730:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1392210-1393267:1:exon

MATR3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MATR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: matrin-3 isoform X3
translation: MSGARAAGWRRAVQRRSRESTEWNHHINGATHSRRCQLLLEIYPEWNPDSDSGHGMGDPFMLQQSTNPAPGILGPPPPPFHLGGPPVGPRGAGNGNMQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGIITNHLILNKINEAFIEMSTTEDAQAAVEYYSTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKTEPPKPELGRVIHLSNLPHSGYSDNAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDALAMVEHCANKALWFQGRCVKVDLSEKYKKLVLRIPNKGVELLKKDKTRKRTYSPDSKDSPSDKKSKTEPAQKPESGNAEEKAKEEKQEDAAEPSSAKSGEQTEQDEPSLLLESEDELLVDEEEAAALLESGSSAGEDADVANLADVTTEEKKDTPDDATVKTEGNVTATPAAKKKLKKRYVGGFPRSMEGFVTLDEVGDEEDSDHQKLRKSGLAAKAAGKSEDSLAEIKVDKIEEPEQESETVENGTKSEENAKAESVEASDATTAAQDTEKNAQENTDPQGEQETKSVLEKPLVPDEFRIGPYQPNIPVGVNYVVPKTGFYCKLCSLFYTNEDVAKKTHCSSLPHYQKLKKILDKMAEDFRQKKEG
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1367307..1367369,1380380..1380441,1380999..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1390609..1390730,1392210..1392260)
location: region:1367307-1392260:1
so has part: feature:1367307-1367369:1:exon
so has part: feature:1380380-1380441:1:exon
so has part: feature:1380999-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1390609-1390730:1:exon
so has part: feature:1392210-1392260:1:exon

XP_030139475.1
type: Protein
SIO_000068: ncbiprotein

position:1367307:1
position: 1367307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1392260:1
position: 1392260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1367307-1367369:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1380380-1380441:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1380999-1381040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1381290-1381393:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1382521-1382573:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1383049-1383174:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1383770-1383895:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384081-1384251:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385480-1385611:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1386773-1386816:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1387284-1387674:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1389626-1390022:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1390609-1390730:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1392210-1392260:1:exon

MATR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MATR3
product: matrin 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 ESTs, 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns
transcript id: XM_030283613.3
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1367451..1367717,1375038..1376115,1380380..1380441,1380999..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1392210..1393267)
location: region:1367451-1393267:1
so has part: feature:1367451-1367717:1:exon
so has part: feature:1375038-1376115:1:exon
so has part: feature:1380380-1380441:1:exon
so has part: feature:1380999-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1392210-1393267:1:exon

position:1367451:1
position: 1367451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1367451-1367717:1:exon

position:1367717:1
position: 1367717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1375038-1376115:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1380380-1380441:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1380999-1381040:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1381290-1381393:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1382521-1382573:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1383049-1383174:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1383770-1383895:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1384081-1384251:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1385480-1385611:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1386773-1386816:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1387284-1387674:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1389626-1390022:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1392210-1393267:1:exon

MATR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MATR3
product: matrin 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 70 ESTs, 4 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 121 samples with support for all annotated introns
transcript id: XM_030283611.3
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1367452..1367717,1375038..1376115,1380380..1380441,1380999..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1390609..1390730,1392210..1393267)
location: region:1367452-1393267:1
so has part: feature:1367452-1367717:1:exon
so has part: feature:1375038-1376115:1:exon
so has part: feature:1380380-1380441:1:exon
so has part: feature:1380999-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1390609-1390730:1:exon
so has part: feature:1392210-1393267:1:exon

position:1367452:1
position: 1367452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1367452-1367717:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1375038-1376115:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1380380-1380441:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1380999-1381040:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1381290-1381393:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1382521-1382573:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1383049-1383174:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1383770-1383895:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1384081-1384251:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1385480-1385611:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1386773-1386816:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1387284-1387674:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1389626-1390022:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1390609-1390730:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1392210-1393267:1:exon

MATR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MATR3
product: matrin 3, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 70 samples with support for all annotated introns
transcript id: XM_030283616.3
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1367538..1367717,1380380..1380441,1380999..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1390609..1390730,1392210..1393267)
location: region:1367538-1393267:1
so has part: feature:1367538-1367717:1:exon
so has part: feature:1380380-1380441:1:exon
so has part: feature:1380999-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1390609-1390730:1:exon
so has part: feature:1392210-1393267:1:exon

position:1367538:1
position: 1367538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1367538-1367717:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1380380-1380441:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1380999-1381040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1381290-1381393:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1382521-1382573:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1383049-1383174:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1383770-1383895:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384081-1384251:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385480-1385611:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1386773-1386816:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1387284-1387674:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1389626-1390022:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1390609-1390730:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1392210-1393267:1:exon

MATR3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MATR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: matrin-3 isoform X1
translation: MSKSFQQSSLSRDSQGHGRDLSAGIGLLAAATQSLNMPASLGRMNQGTARLASLMNLGMSSSLNQQGSHSALSSGSTSSHNLQSIFNIGSRGPLPLSSQHRGDADQATNILASFGLSARDLDELSRYPEDKITPENLPQILLQLKRRRAEEGYGRDGRSSTREPPYRVPRDDWEEKRHFRRDSFDDRGPSLNPVVDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDESFYGETSHNYHKFDSEYDRMGRGPGPERSLFEKKRGAPPNSNIEDFHGFLPKGYPHLCSICDMPVHSNKEWNHHINGATHSRRCQLLLEIYPEWNPDSDSGHGMGDPFMLQQSTNPAPGILGPPPPPFHLGGPPVGPRGAGNGNMQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGIITNHLILNKINEAFIEMSTTEDAQAAVEYYSTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKTEPPKPELGRVIHLSNLPHSGYSDNAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDALAMVEHCANKALWFQGRCVKVDLSEKYKKLVLRIPNKGVELLKKDKTRKRTYSPDSKDSPSDKKSKTEPAQKPESGNAEEKAKEEKQEDAAEPSSAKSGEQTEQDEPSLLLESEDELLVDEEEAAALLESGSSAGEDADVANLADVTTEEKKDTPDDATVKTEGNVTATPAAKKKLKKRYVGGFPRSMEGFVTLDEVGDEEDSDHQKLRKSGLAAKAAGKSEDSLAEIKVDKIEEPEQESETVENGTKSEENAKAESVEASDATTAAQDTEKNAQENTDPQGEQETKSVLEKPLVPDEFRIGPYQPNIPVGVNYVVPKTGFYCKLCSLFYTNEDVAKKTHCSSLPHYQKLKKILDKMAEDFRQKKEG
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1375225..1376115,1380380..1380441,1380999..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1390609..1390730,1392210..1392260)
location: region:1375225-1392260:1
so has part: feature:1375225-1376115:1:exon
so has part: feature:1380380-1380441:1:exon
so has part: feature:1380999-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1390609-1390730:1:exon
so has part: feature:1392210-1392260:1:exon

XP_030139471.1
type: Protein
SIO_000068: ncbiprotein

position:1375225:1
position: 1375225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1375225-1376115:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1380380-1380441:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1380999-1381040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1381290-1381393:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1382521-1382573:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1383049-1383174:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1383770-1383895:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384081-1384251:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385480-1385611:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1386773-1386816:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1387284-1387674:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1389626-1390022:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1390609-1390730:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1392210-1392260:1:exon

MATR3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MATR3
inference: similar to AA sequence (same species):RefSeq:NP_001192185.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: matrin-3
translation: MSKSFQQSSLSRDSQGHGRDLSAGIGLLAAATQSLNMPASLGRMNQGTARLASLMNLGMSSSLNQQGSHSALSSGSTSSHNLQSIFNIGSRGPLPLSSQHRGDADQATNILASFGLSARDLDELSRYPEDKITPENLPQILLQLKRRRAEEGYGRDGRSSTREPPYRVPRDDWEEKRHFRRDSFDDRGPSLNPVVDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDESFYGETSHNYHKFDSEYDRMGRGPGPERSLFEKKRGAPPNSNIEDFHGFLPKGYPHLCSICDMPVHSNKEWNHHINGATHSRRCQLLLEIYPEWNPDSDSGHGMGDPFMLQQSTNPAPGILGPPPPPFHLGGPPVGPRGAGNGNMQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGIITNHLILNKINEAFIEMSTTEDAQAAVEYYSTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKTEPPKPELGRVIHLSNLPHSGYSDNAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDALAMVEHCANKALWFQGRCVKVDLSEKYKKLVLRIPNKGVELLKKDKTRKRTYSPDSKDSPSDKKSKTEPAQKPESGNAEEKAKEEKQEDAAEPSSAKSGEQTEQDEPSLLLESEDELLVDEEEAAALLESGSSAGEDADVANLADVATEEKKDTPDDATVKTEGNVTATPAAKKKLKKRYVGGFPRSMEGFVTLDEVGDEEDSDHQKLRKSGLAAKAAGKSEDSLAEIKVDKIEEPEQESETVENGTKSEENAKAESVEASDATTAAQDTEKNAQENTDPQGEQETKSVLEKPLVPDEFRIGPYQPNIPVGVNYVVPKTGFYCKLCSLFYTNEDVAKKTHCSSLPHYQKLKKILDKMAEDFRQKKEG
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1375225..1376115,1380380..1380441,1380999..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1390609..1390730,1392210..1392260)
location: region:1375225-1392260:1
so has part: feature:1375225-1376115:1:exon
so has part: feature:1380380-1380441:1:exon
so has part: feature:1380999-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1390609-1390730:1:exon
so has part: feature:1392210-1392260:1:exon

NP_001192185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1375225-1376115:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1380380-1380441:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1380999-1381040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1381290-1381393:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1382521-1382573:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1383049-1383174:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1383770-1383895:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384081-1384251:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385480-1385611:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1386773-1386816:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1387284-1387674:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1389626-1390022:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1390609-1390730:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1392210-1392260:1:exon

MATR3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MATR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: matrin-3 isoform X2
translation: MSKSFQQSSLSRDSQGHGRDLSAGIGLLAAATQSLNMPASLGRMNQGTARLASLMNLGMSSSLNQQGSHSALSSGSTSSHNLQSIFNIGSRGPLPLSSQHRGDADQATNILASFGLSARDLDELSRYPEDKITPENLPQILLQLKRRRAEEGYGRDGRSSTREPPYRVPRDDWEEKRHFRRDSFDDRGPSLNPVVDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDESFYGETSHNYHKFDSEYDRMGRGPGPERSLFEKKRGAPPNSNIEDFHGFLPKGYPHLCSICDMPVHSNKEWNHHINGATHSRRCQLLLEIYPEWNPDSDSGHGMGDPFMLQQSTNPAPGILGPPPPPFHLGGPPVGPRGAGNGNMQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGIITNHLILNKINEAFIEMSTTEDAQAAVEYYSTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKTEPPKPELGRVIHLSNLPHSGYSDNAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDALAMVEHCANKALWFQGRCVKVDLSEKYKKLVLRIPNKGVELLKKDKTRKRTYSPDSKDSPSDKKSKTEPAQKPESGNAEEKAKEEKQEDAAEPSSAKSGEQTEQDEPSLLLESEDELLVDEEEAAALLESGSSAGEDADVANLADVTTEEKKDTPDDATVKTEGNVTATPAAKKKLKKRYVGGFPRSMEGFVTLDEVGDEEDSDHQKLRKSGLAAKAAGKSEDSLAEIKVDKIEEPEQESETVENGTKSEENAKAESVEASDATTAAQDTEKNAQENTDPQGEQETKSVLEKPLVPDEFRIGPYQPNIPVENSG
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1375225..1376115,1380380..1380441,1380999..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1392210..1392223)
location: region:1375225-1392223:1
so has part: feature:1375225-1376115:1:exon
so has part: feature:1380380-1380441:1:exon
so has part: feature:1380999-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1392210-1392223:1:exon

XP_030139473.1
type: Protein
SIO_000068: ncbiprotein

position:1392223:1
position: 1392223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1375225-1376115:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1380380-1380441:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1380999-1381040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1381290-1381393:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1382521-1382573:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1383049-1383174:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1383770-1383895:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384081-1384251:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385480-1385611:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1386773-1386816:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1387284-1387674:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1389626-1390022:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1392210-1392223:1:exon

MATR3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MATR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: matrin-3 isoform X4
translation: MGDPFMLQQSTNPAPGILGPPPPPFHLGGPPVGPRGAGNGNMQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGIITNHLILNKINEAFIEMSTTEDAQAAVEYYSTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKTEPPKPELGRVIHLSNLPHSGYSDNAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDALAMVEHCANKALWFQGRCVKVDLSEKYKKLVLRIPNKGVELLKKDKTRKRTYSPDSKDSPSDKKSKTEPAQKPESGNAEEKAKEEKQEDAAEPSSAKSGEQTEQDEPSLLLESEDELLVDEEEAAALLESGSSAGEDADVANLADVTTEEKKDTPDDATVKTEGNVTATPAAKKKLKKRYVGGFPRSMEGFVTLDEVGDEEDSDHQKLRKSGLAAKAAGKSEDSLAEIKVDKIEEPEQESETVENGTKSEENAKAESVEASDATTAAQDTEKNAQENTDPQGEQETKSVLEKPLVPDEFRIGPYQPNIPVGVNYVVPKTGFYCKLCSLFYTNEDVAKKTHCSSLPHYQKLKKILDKMAEDFRQKKEG
SIO_010081: MATR3
subclass of: SO_0000673
so part of: MATR3
location: join(1381039..1381040,1381290..1381393,1382521..1382573,1383049..1383174,1383770..1383895,1384081..1384251,1385480..1385611,1386773..1386816,1387284..1387674,1389626..1390022,1390609..1390730,1392210..1392260)
location: region:1381039-1392260:1
so has part: feature:1381039-1381040:1:exon
so has part: feature:1381290-1381393:1:exon
so has part: feature:1382521-1382573:1:exon
so has part: feature:1383049-1383174:1:exon
so has part: feature:1383770-1383895:1:exon
so has part: feature:1384081-1384251:1:exon
so has part: feature:1385480-1385611:1:exon
so has part: feature:1386773-1386816:1:exon
so has part: feature:1387284-1387674:1:exon
so has part: feature:1389626-1390022:1:exon
so has part: feature:1390609-1390730:1:exon
so has part: feature:1392210-1392260:1:exon

XP_030139476.1
type: Protein
SIO_000068: ncbiprotein

position:1381039:1
position: 1381039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1381039-1381040:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1381290-1381393:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1382521-1382573:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1383049-1383174:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1383770-1383895:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1384081-1384251:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1385480-1385611:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1386773-1386816:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1387284-1387674:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1389626-1390022:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1390609-1390730:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1392210-1392260:1:exon

PAIP2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PAIP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1395424..1403462
location: region:1395424-1403462:1
so has part: feature:1395424-1403462:1:exon
subclass of: SO_0000010

100219747
type: Gene
SIO_000068: ncbigene

position:1395424:1
position: 1395424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1403462:1
position: 1403462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1395424-1403462:1:exon

PAIP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PAIP2
product: poly(A) binding protein interacting protein 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 ESTs, 2 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_030283858.3
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1395424..1395447,1398775..1398940,1400985..1401164,1402351..1403462)
location: region:1395424-1403462:1
so has part: feature:1395424-1395447:1:exon
so has part: feature:1398775-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1403462:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1395424-1395447:1:exon

position:1395447:1
position: 1395447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1398775-1398940:1:exon

position:1398775:1
position: 1398775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1398940:1
position: 1398940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1400985-1401164:1:exon

position:1400985:1
position: 1400985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1401164:1
position: 1401164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1402351-1403462:1:exon

position:1402351:1
position: 1402351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PAIP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PAIP2
product: poly(A) binding protein interacting protein 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 ESTs, 8 long SRA reads, 14 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 157 samples with support for all annotated introns
transcript id: XM_030283857.3
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1395437..1395576,1398775..1398940,1400985..1401164,1402351..1403462)
location: region:1395437-1403462:1
so has part: feature:1395437-1395576:1:exon
so has part: feature:1398775-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1403462:1:exon

position:1395437:1
position: 1395437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1395437-1395576:1:exon

position:1395576:1
position: 1395576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1398775-1398940:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1400985-1401164:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1402351-1403462:1:exon

PAIP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PAIP2
product: poly(A) binding protein interacting protein 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 39 ESTs, 1 long SRA read, 14 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 122 samples with support for all annotated introns
transcript id: XM_030283861.3
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1395455..1395576,1398781..1398940,1400985..1401164,1402351..1403462)
location: region:1395455-1403462:1
so has part: feature:1395455-1395576:1:exon
so has part: feature:1398781-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1403462:1:exon

position:1395455:1
position: 1395455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1395455-1395576:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1398781-1398940:1:exon

position:1398781:1
position: 1398781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1400985-1401164:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1402351-1403462:1:exon

PAIP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PAIP2
product: poly(A) binding protein interacting protein 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 ESTs, 1 long SRA read, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 147 samples with support for all annotated introns
transcript id: XM_030283859.3
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1395743..1395886,1398775..1398940,1400985..1401164,1402351..1403462)
location: region:1395743-1403462:1
so has part: feature:1395743-1395886:1:exon
so has part: feature:1398775-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1403462:1:exon

position:1395743:1
position: 1395743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1395743-1395886:1:exon

position:1395886:1
position: 1395886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1398775-1398940:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1400985-1401164:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1402351-1403462:1:exon

PAIP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PAIP2
product: poly(A) binding protein interacting protein 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 ESTs, 1 long SRA read, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_030283864.3
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1395870..1395886,1398781..1398940,1400985..1401164,1402351..1403462)
location: region:1395870-1403462:1
so has part: feature:1395870-1395886:1:exon
so has part: feature:1398781-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1403462:1:exon

position:1395870:1
position: 1395870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1395870-1395886:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1398781-1398940:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1400985-1401164:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1402351-1403462:1:exon

PAIP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PAIP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polyadenylate-binding protein-interacting protein 2
translation: MKDPSRSSTSPSIISEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERCFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDSSSLEDLVVKSNLNPNAKEFVPGVKYLNI
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1398803..1398940,1400985..1401164,1402351..1402416)
location: region:1398803-1402416:1
so has part: feature:1398803-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1402416:1:exon

XP_030139717.1
type: Protein
SIO_000068: ncbiprotein

position:1398803:1
position: 1398803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1402416:1
position: 1402416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1398803-1398940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1400985-1401164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1402351-1402416:1:exon

PAIP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PAIP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polyadenylate-binding protein-interacting protein 2
translation: MKDPSRSSTSPSIISEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERCFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDSSSLEDLVVKSNLNPNAKEFVPGVKYLNI
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1398803..1398940,1400985..1401164,1402351..1402416)
location: region:1398803-1402416:1
so has part: feature:1398803-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1402416:1:exon

XP_030139718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1398803-1398940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1400985-1401164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1402351-1402416:1:exon

PAIP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PAIP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polyadenylate-binding protein-interacting protein 2
translation: MKDPSRSSTSPSIISEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERCFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDSSSLEDLVVKSNLNPNAKEFVPGVKYLNI
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1398803..1398940,1400985..1401164,1402351..1402416)
location: region:1398803-1402416:1
so has part: feature:1398803-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1402416:1:exon

XP_030139719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1398803-1398940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1400985-1401164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1402351-1402416:1:exon

PAIP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PAIP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polyadenylate-binding protein-interacting protein 2
translation: MKDPSRSSTSPSIISEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERCFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDSSSLEDLVVKSNLNPNAKEFVPGVKYLNI
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1398803..1398940,1400985..1401164,1402351..1402416)
location: region:1398803-1402416:1
so has part: feature:1398803-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1402416:1:exon

XP_030139721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1398803-1398940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1400985-1401164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1402351-1402416:1:exon

PAIP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PAIP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polyadenylate-binding protein-interacting protein 2
translation: MKDPSRSSTSPSIISEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERCFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDSSSLEDLVVKSNLNPNAKEFVPGVKYLNI
SIO_010081: PAIP2
subclass of: SO_0000673
so part of: PAIP2
location: join(1398803..1398940,1400985..1401164,1402351..1402416)
location: region:1398803-1402416:1
so has part: feature:1398803-1398940:1:exon
so has part: feature:1400985-1401164:1:exon
so has part: feature:1402351-1402416:1:exon

XP_030139724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1398803-1398940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1400985-1401164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1402351-1402416:1:exon

SLC23A1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SLC23A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1405462..1409962)
location: region:1405462-1409962:-1
so has part: feature:1405462-1409962:-1:exon
subclass of: SO_0000010

100231186
type: Gene
SIO_000068: ncbigene

position:1405462:-1
position: 1405462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1409962:-1
position: 1409962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1405462-1409962:-1:exon

SLC23A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLC23A1
product: solute carrier family 23 member 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_030284138.3
SIO_010081: SLC23A1
subclass of: SO_0000673
so part of: SLC23A1
location: complement(join(1405462..1405841,1405956..1406051,1406181..1406324,1406472..1406601,1406675..1406780,1406899..1407046,1407213..1407369,1407477..1407597,1408169..1408350,1408466..1408533,1408610..1408698,1408769..1408926,1409014..1409115,1409306..1409377,1409852..1409962))
location: region:1405462-1409962:-1
so has part: feature:1409852-1409962:-1:exon
so has part: feature:1409306-1409377:-1:exon
so has part: feature:1409014-1409115:-1:exon
so has part: feature:1408769-1408926:-1:exon
so has part: feature:1408610-1408698:-1:exon
so has part: feature:1408466-1408533:-1:exon
so has part: feature:1408169-1408350:-1:exon
so has part: feature:1407477-1407597:-1:exon
so has part: feature:1407213-1407369:-1:exon
so has part: feature:1406899-1407046:-1:exon
so has part: feature:1406675-1406780:-1:exon
so has part: feature:1406472-1406601:-1:exon
so has part: feature:1406181-1406324:-1:exon
so has part: feature:1405956-1406051:-1:exon
so has part: feature:1405462-1405841:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1409852-1409962:-1:exon

position:1409852:-1
position: 1409852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1409306-1409377:-1:exon

position:1409306:-1
position: 1409306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1409377:-1
position: 1409377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1409014-1409115:-1:exon

position:1409014:-1
position: 1409014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1409115:-1
position: 1409115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1408769-1408926:-1:exon

position:1408769:-1
position: 1408769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1408926:-1
position: 1408926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1408610-1408698:-1:exon

position:1408610:-1
position: 1408610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1408698:-1
position: 1408698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1408466-1408533:-1:exon

position:1408466:-1
position: 1408466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1408533:-1
position: 1408533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1408169-1408350:-1:exon

position:1408169:-1
position: 1408169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1408350:-1
position: 1408350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1407477-1407597:-1:exon

position:1407477:-1
position: 1407477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1407597:-1
position: 1407597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1407213-1407369:-1:exon

position:1407213:-1
position: 1407213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1407369:-1
position: 1407369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1406899-1407046:-1:exon

position:1406899:-1
position: 1406899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1407046:-1
position: 1407046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1406675-1406780:-1:exon

position:1406675:-1
position: 1406675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1406780:-1
position: 1406780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1406472-1406601:-1:exon

position:1406472:-1
position: 1406472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1406601:-1
position: 1406601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1406181-1406324:-1:exon

position:1406181:-1
position: 1406181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1406324:-1
position: 1406324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1405956-1406051:-1:exon

position:1405956:-1
position: 1405956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1406051:-1
position: 1406051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1405462-1405841:-1:exon

position:1405841:-1
position: 1405841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SLC23A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLC23A1
product: solute carrier family 23 member 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_041718972.1
SIO_010081: SLC23A1
subclass of: SO_0000673
so part of: SLC23A1
location: complement(join(1405462..1405841,1405956..1406051,1406181..1406324,1406472..1406601,1406675..1406780,1406899..1407046,1407213..1407369,1407477..1407597,1408169..1408350,1408466..1408533,1408610..1408698,1408769..1408926,1409014..1409118,1409306..1409377,1409852..1409962))
location: region:1405462-1409962:-1
so has part: feature:1409852-1409962:-1:exon
so has part: feature:1409306-1409377:-1:exon
so has part: feature:1409014-1409118:-1:exon
so has part: feature:1408769-1408926:-1:exon
so has part: feature:1408610-1408698:-1:exon
so has part: feature:1408466-1408533:-1:exon
so has part: feature:1408169-1408350:-1:exon
so has part: feature:1407477-1407597:-1:exon
so has part: feature:1407213-1407369:-1:exon
so has part: feature:1406899-1407046:-1:exon
so has part: feature:1406675-1406780:-1:exon
so has part: feature:1406472-1406601:-1:exon
so has part: feature:1406181-1406324:-1:exon
so has part: feature:1405956-1406051:-1:exon
so has part: feature:1405462-1405841:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1409852-1409962:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1409306-1409377:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1409014-1409118:-1:exon

position:1409118:-1
position: 1409118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1408769-1408926:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1408610-1408698:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1408466-1408533:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1408169-1408350:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1407477-1407597:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1407213-1407369:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1406899-1407046:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1406675-1406780:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1406472-1406601:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1406181-1406324:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1405956-1406051:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1405462-1405841:-1:exon

SLC23A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLC23A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier family 23 member 1 isoform X2
translation: MGTRSGDLAQPQNGNVALAPAGSLHTPGKELPAAGRDPGTGTRPPRPEVDMLYRIEDVPPWYLCILLGFQHYLTCFSGTIAVPFLLAESLCVGKDQLTVSYLIGTIFTCVGITTLIQTTVGIRLPLFQASALAFLVPAKSILALEKWRCPPEEQIYGNWSLPLNTSHIWQPRMREIQGAIIVSSLVEVVIGLLGLPGALLSYIGPLTVTPTVSLIGLSVFQAAGDRAGSHWGISVLTIFLIVLFAQYLRQVSICLPGYRRGHGFVLLRIQIFKMFPIILAIMLVWLICYVLTRTGVFPSRPEEYGYKARTDARGEILSVAPWFRVPYPCQWGLPTVTSAAVLGMFSATLAGIIESIGDYYSCARLAGAPPPPVHAINRGIFTEGISCIIAGLLGTGNGSTSSSPNIGVLGITKVGSRRVIQYGAGIMLLLGTIGKFTALFASLPDPVLGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFAMFFGLTLPNYLDSHPGAINTGVPELDQILTVLLTTEMFVGGTIAFVLDNTIPGTQEERGLVQWKAGAHSDSTSSASLRSYDFPLGMGAVRRSRWLRNVPVCPVFTGFRARGSGKAAAEGPEGADRGSVCTKV
SIO_010081: SLC23A1
subclass of: SO_0000673
so part of: SLC23A1
location: complement(join(1405600..1405841,1405956..1406051,1406181..1406324,1406472..1406601,1406675..1406780,1406899..1407046,1407213..1407369,1407477..1407597,1408169..1408350,1408466..1408533,1408610..1408698,1408769..1408926,1409014..1409115,1409306..1409377,1409852..1409887))
location: region:1405600-1409887:-1
so has part: feature:1409852-1409887:-1:exon
so has part: feature:1409306-1409377:-1:exon
so has part: feature:1409014-1409115:-1:exon
so has part: feature:1408769-1408926:-1:exon
so has part: feature:1408610-1408698:-1:exon
so has part: feature:1408466-1408533:-1:exon
so has part: feature:1408169-1408350:-1:exon
so has part: feature:1407477-1407597:-1:exon
so has part: feature:1407213-1407369:-1:exon
so has part: feature:1406899-1407046:-1:exon
so has part: feature:1406675-1406780:-1:exon
so has part: feature:1406472-1406601:-1:exon
so has part: feature:1406181-1406324:-1:exon
so has part: feature:1405956-1406051:-1:exon
so has part: feature:1405600-1405841:-1:exon

XP_030139998.3
type: Protein
SIO_000068: ncbiprotein

position:1405600:-1
position: 1405600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1409887:-1
position: 1409887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1409852-1409887:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1409306-1409377:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1409014-1409115:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1408769-1408926:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1408610-1408698:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1408466-1408533:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1408169-1408350:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1407477-1407597:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1407213-1407369:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1406899-1407046:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1406675-1406780:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1406472-1406601:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1406181-1406324:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1405956-1406051:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1405600-1405841:-1:exon

SLC23A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLC23A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier family 23 member 1 isoform X1
translation: MGTRSGDLAQPQNGNVALAPAGSLHTPGKELPAAGRQDPGTGTRPPRPEVDMLYRIEDVPPWYLCILLGFQHYLTCFSGTIAVPFLLAESLCVGKDQLTVSYLIGTIFTCVGITTLIQTTVGIRLPLFQASALAFLVPAKSILALEKWRCPPEEQIYGNWSLPLNTSHIWQPRMREIQGAIIVSSLVEVVIGLLGLPGALLSYIGPLTVTPTVSLIGLSVFQAAGDRAGSHWGISVLTIFLIVLFAQYLRQVSICLPGYRRGHGFVLLRIQIFKMFPIILAIMLVWLICYVLTRTGVFPSRPEEYGYKARTDARGEILSVAPWFRVPYPCQWGLPTVTSAAVLGMFSATLAGIIESIGDYYSCARLAGAPPPPVHAINRGIFTEGISCIIAGLLGTGNGSTSSSPNIGVLGITKVGSRRVIQYGAGIMLLLGTIGKFTALFASLPDPVLGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFAMFFGLTLPNYLDSHPGAINTGVPELDQILTVLLTTEMFVGGTIAFVLDNTIPGTQEERGLVQWKAGAHSDSTSSASLRSYDFPLGMGAVRRSRWLRNVPVCPVFTGFRARGSGKAAAEGPEGADRGSVCTKV
SIO_010081: SLC23A1
subclass of: SO_0000673
so part of: SLC23A1
location: complement(join(1405600..1405841,1405956..1406051,1406181..1406324,1406472..1406601,1406675..1406780,1406899..1407046,1407213..1407369,1407477..1407597,1408169..1408350,1408466..1408533,1408610..1408698,1408769..1408926,1409014..1409118,1409306..1409377,1409852..1409887))
location: region:1405600-1409887:-1
so has part: feature:1409852-1409887:-1:exon
so has part: feature:1409306-1409377:-1:exon
so has part: feature:1409014-1409118:-1:exon
so has part: feature:1408769-1408926:-1:exon
so has part: feature:1408610-1408698:-1:exon
so has part: feature:1408466-1408533:-1:exon
so has part: feature:1408169-1408350:-1:exon
so has part: feature:1407477-1407597:-1:exon
so has part: feature:1407213-1407369:-1:exon
so has part: feature:1406899-1407046:-1:exon
so has part: feature:1406675-1406780:-1:exon
so has part: feature:1406472-1406601:-1:exon
so has part: feature:1406181-1406324:-1:exon
so has part: feature:1405956-1406051:-1:exon
so has part: feature:1405600-1405841:-1:exon

XP_041574906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1409852-1409887:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1409306-1409377:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1409014-1409118:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1408769-1408926:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1408610-1408698:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1408466-1408533:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1408169-1408350:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1407477-1407597:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1407213-1407369:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1406899-1407046:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1406675-1406780:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1406472-1406601:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1406181-1406324:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1405956-1406051:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1405600-1405841:-1:exon

MZB1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: MZB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1410042..1411468)
location: region:1410042-1411468:-1
so has part: feature:1410042-1411468:-1:exon
subclass of: SO_0000010

115490585
type: Gene
SIO_000068: ncbigene

position:1410042:-1
position: 1410042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1411468:-1
position: 1411468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1410042-1411468:-1:exon

MZB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MZB1
product: marginal zone B and B1 cell specific protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_030284141.3
SIO_010081: MZB1
subclass of: SO_0000673
so part of: MZB1
location: complement(join(1410042..1410487,1410838..1410944,1411190..1411468))
location: region:1410042-1411468:-1
so has part: feature:1411190-1411468:-1:exon
so has part: feature:1410838-1410944:-1:exon
so has part: feature:1410042-1410487:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1411190-1411468:-1:exon

position:1411190:-1
position: 1411190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1410838-1410944:-1:exon

position:1410838:-1
position: 1410838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1410944:-1
position: 1410944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1410042-1410487:-1:exon

position:1410487:-1
position: 1410487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MZB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: MZB1
product: marginal zone B and B1 cell specific protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 6 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_030284140.3
SIO_010081: MZB1
subclass of: SO_0000673
so part of: MZB1
location: complement(join(1410042..1410487,1410563..1410667,1410838..1410944,1411190..1411446))
location: region:1410042-1411446:-1
so has part: feature:1411190-1411446:-1:exon
so has part: feature:1410838-1410944:-1:exon
so has part: feature:1410563-1410667:-1:exon
so has part: feature:1410042-1410487:-1:exon

position:1411446:-1
position: 1411446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1411190-1411446:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1410838-1410944:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1410563-1410667:-1:exon

position:1410563:-1
position: 1410563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1410667:-1
position: 1410667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1410042-1410487:-1:exon

MZB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MZB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: marginal zone B- and B1-cell-specific protein isoform X2
translation: MRAEVAAWLVLSLLGGTGAEDTCGDPPAAPSRSIPAPQLSPEELLSPHMPQSLRCDACHAIAFQIEEQLRKAEGKVGKKALKESDYMEVLERSCSQEWERLSKLCHGYVGERGESRIYGAHRRGPAALRELLCHGDKGPCAGHQQRPEEPSKALQNEL
SIO_010081: MZB1
subclass of: SO_0000673
so part of: MZB1
location: complement(join(1410310..1410487,1410838..1410944,1411190..1411381))
location: region:1410310-1411381:-1
so has part: feature:1411190-1411381:-1:exon
so has part: feature:1410838-1410944:-1:exon
so has part: feature:1410310-1410487:-1:exon

XP_030140001.3
type: Protein
SIO_000068: ncbiprotein

position:1410310:-1
position: 1410310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1411381:-1
position: 1411381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1411190-1411381:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1410838-1410944:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1410310-1410487:-1:exon

MZB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: MZB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: marginal zone B- and B1-cell-specific protein isoform X1
translation: MRAEVAAWLVLSLLGGTGAEDTCGDPPAAPSRSIPAPQLSPEELLSPHMPQSLRCDACHAIAFQIEEQLRKAEGKVGKKALKESDYMEVLERSCSQEWESYGVLELAGEKRLSGPGLRAQQPLSVLVSGGPWPGRLSKLCHGYVGERGESRIYGAHRRGPAALRELLCHGDKGPCAGHQQRPEEPSKALQNEL
SIO_010081: MZB1
subclass of: SO_0000673
so part of: MZB1
location: complement(join(1410310..1410487,1410563..1410667,1410838..1410944,1411190..1411381))
location: region:1410310-1411381:-1
so has part: feature:1411190-1411381:-1:exon
so has part: feature:1410838-1410944:-1:exon
so has part: feature:1410563-1410667:-1:exon
so has part: feature:1410310-1410487:-1:exon

XP_030140000.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1411190-1411381:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1410838-1410944:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1410563-1410667:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1410310-1410487:-1:exon

PROB1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PROB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1412026..1416865)
location: region:1412026-1416865:-1
so has part: feature:1412026-1416865:-1:exon
subclass of: SO_0000010

116808932
type: Gene
SIO_000068: ncbigene

position:1412026:-1
position: 1412026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1416865:-1
position: 1416865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1412026-1416865:-1:exon

PROB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PROB1
product: proline rich basic protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032750902.2
SIO_010081: PROB1
subclass of: SO_0000673
so part of: PROB1
location: complement(1412026..1416865)
location: region:1412026-1416865:-1
so has part: feature:1412026-1416865:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1412026-1416865:-1:exon

PROB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PROB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich basic protein 1
translation: MPRGKRDPVLLSPAELPGPGAEGPRGAGDGRRSAEEEEEEDGHLPGLPRDDLTKSMSSSSVSSYHSALCSDGTETFKDCLEFLDEEGSPGRAAPGRWAPAGAPGTAPPPVPLARPQRAQLSSAAKNSPAPGQGGRMGPLGGDRQPVPAAGEPAVPRQPGAMLPGAPSDSDEVDGEVQALTARAFRSLSGLPGARLDMCSSHTSSSLSNSLSEDGGRPRRWPVGAGEPRGAVTALHGRAGWPFPTGVDGELLGKEQFECVDVELETEARKGHGKKRTVPKRQILLKRKERKETGFGPRGDGPAPQPPARKEPPSKGRAVGEDFRLNYQQFMKAASLEAGTDRTRAASSLVKNVLAKKMQYEQRIKMEQKGLRGSSTSSGPSSAGTDLLGDGLEGKSSSLSRSDCSFSAEDLRSGGMPVATAAAGSTATTTHPTKGVVLSEATRETVCNLRKTFNELNQRMKYQEVLEGRWLPAAAEEHASERICYQRARALFEAQPGVGKVLDVAPRFARAPRPWPSLKERAIGPIHSQGLPFKAESRALPATPPRRPFASSRPQEARTLPQSHPQKPPAAPRRPPSPGTIPVPRGSPPAAPPKPEEKGKGRVPQPRDVRKLVKSSYSLKFGTAGASRGTVAPASSGEPPPATPLVIHCTSVRREPAAEEVPAAPGREPAPACPEGPAKPPHSSPINITRVQATRRGAAPTEEPPVSPPRRERSELRLPPRTERVPHVETHLHVLVGRPGPAAAESCPGPSSAVLRAEKTVLLPPPPASPAEEKELRGRGGGRALPAAEGPEPPGQRPSSGDSRDPRATAPGGSSAAEPGANERGQRQPGRRVSVGNGRSAGGTGPAAPLRAGDSSEGLPGRLPEQRETWERSPQWPAATEPYPPAAPAENSNYLAIPERAPKSTLMPKLSSVPNPASASFGTSMVTNVTSSSFGFPSTSSLASTSFGTPLVSNSNKSFGAPLVPNMCSTSFGNPLVPNPSSASFGNPLVPNPSSASFGNPLIPNPSSMSFGNSLVPNPSSMSFGSSLVPNASSASFGNPLIPNPSSASFGSPLMPNPCSMAFGSSLVPSPSSASFANPLIPNPSSVSFGSSLVPNPSSASFGSPLVPNPSSASFGNPLIPNPSSAPFGSPLVPSSSSASFGNSLIPNPCSSSFGSPLVSNRIPTSLGHPSVSNMASSFFGSPFVPHPASAPLGSGAYPLPGGEVPWSKPSPEPPLPRPPEGSAAVGPPAQPHPEDAPHFLRGTDGPSPSGRSRQSPPKPFSTAVPAQRRMLVDPSSGKCYYVEPPRQPQMKTLYDPETGQYLEVLVPPVASHSGLYQAPFNPLVMAPGVYGPPYSPYGGFPGLPAPPPSAPSPPHPSLPAADHPGTPGSAPKGEEPSPAGGADCGYLESPYYIPTGMRASPGPEQPPARASPAAPEGSLLRM
SIO_010081: PROB1
subclass of: SO_0000673
so part of: PROB1
location: complement(1412408..1416676)
location: region:1412408-1416676:-1
so has part: feature:1412408-1416676:-1:exon

XP_032606793.2
type: Protein
SIO_000068: ncbiprotein

position:1412408:-1
position: 1412408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1416676:-1
position: 1416676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1412408-1416676:-1:exon

DNAJC18
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: DNAJC18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1420155..1434250)
location: region:1420155-1434250:-1
so has part: feature:1420155-1434250:-1:exon
subclass of: SO_0000010

100222622
type: Gene
SIO_000068: ncbigene

position:1420155:-1
position: 1420155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1434250:-1
position: 1434250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1420155-1434250:-1:exon

DNAJC18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DNAJC18
product: DnaJ heat shock protein family (Hsp40) member C18
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 39 ESTs, 7 long SRA reads, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 118 samples with support for all annotated introns
transcript id: XM_002186777.6
SIO_010081: DNAJC18
subclass of: SO_0000673
so part of: DNAJC18
location: complement(join(1420155..1422602,1425872..1426044,1427699..1427808,1429578..1429690,1432360..1432545,1433811..1433956,1434066..1434250))
location: region:1420155-1434250:-1
so has part: feature:1434066-1434250:-1:exon
so has part: feature:1433811-1433956:-1:exon
so has part: feature:1432360-1432545:-1:exon
so has part: feature:1429578-1429690:-1:exon
so has part: feature:1427699-1427808:-1:exon
so has part: feature:1425872-1426044:-1:exon
so has part: feature:1420155-1422602:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1434066-1434250:-1:exon

position:1434066:-1
position: 1434066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1433811-1433956:-1:exon

position:1433811:-1
position: 1433811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1433956:-1
position: 1433956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1432360-1432545:-1:exon

position:1432360:-1
position: 1432360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1432545:-1
position: 1432545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1429578-1429690:-1:exon

position:1429578:-1
position: 1429578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1429690:-1
position: 1429690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1427699-1427808:-1:exon

position:1427699:-1
position: 1427699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1427808:-1
position: 1427808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1425872-1426044:-1:exon

position:1425872:-1
position: 1425872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1426044:-1
position: 1426044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1420155-1422602:-1:exon

position:1422602:-1
position: 1422602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DNAJC18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DNAJC18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dnaJ homolog subfamily C member 18
translation: MTSPPFTVTSHLAAARARSQQPPRTRWRRGAAGGERGRRRPRADMTYTAEQLHGVQRIKRCRDYYEILGVSRDAGEEELKRAYRRLALKFHPDKNRAPGATEAFKAIGNAFAVLSNPEKRLRYDELGSDHEHVSTGQARHYNYYTEFEADITPEEIFNVFFGGHFPTGNIHMFSNVARDAHYYPRRHRAERAWTQEPEEEEHRPQNSYSAFIQLMPVFIIIIVSVITQLMATNPPYSLFYKSSIGHVVSRETENLQVPYYVDKNFEKNYQGAELQELEKTVEKDYIDYIQTSCWKEKQQKSDLSNLAKLYRDERLKQKAESLKLEHCEKLSSLIGMHKGG
SIO_010081: DNAJC18
subclass of: SO_0000673
so part of: DNAJC18
location: complement(join(1422478..1422602,1425872..1426044,1427699..1427808,1429578..1429690,1432360..1432545,1433811..1433956,1434066..1434235))
location: region:1422478-1434235:-1
so has part: feature:1434066-1434235:-1:exon
so has part: feature:1433811-1433956:-1:exon
so has part: feature:1432360-1432545:-1:exon
so has part: feature:1429578-1429690:-1:exon
so has part: feature:1427699-1427808:-1:exon
so has part: feature:1425872-1426044:-1:exon
so has part: feature:1422478-1422602:-1:exon

XP_002186813.4
type: Protein
SIO_000068: ncbiprotein

position:1422478:-1
position: 1422478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1434235:-1
position: 1434235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1434066-1434235:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1433811-1433956:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1432360-1432545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1429578-1429690:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1427699-1427808:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1425872-1426044:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1422478-1422602:-1:exon

ECSCR
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ECSCR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1435281..1453943)
location: region:1435281-1453943:-1
so has part: feature:1435281-1453943:-1:exon
subclass of: SO_0000010

115497125
type: Gene
SIO_000068: ncbigene

position:1435281:-1
position: 1435281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1453943:-1
position: 1453943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1435281-1453943:-1:exon

ECSCR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ECSCR
product: endothelial cell surface expressed chemotaxis and apoptosis regulator, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_030284143.3
SIO_010081: ECSCR
subclass of: SO_0000673
so part of: ECSCR
location: complement(join(1435281..1436582,1437018..1437117,1438248..1438284,1438832..1438930,1439501..1439599,1440094..1440162,1442002..1442055,1442499..1442615,1443898..1443948,1444776..1444817,1453804..1453938))
location: region:1435281-1453938:-1
so has part: feature:1453804-1453938:-1:exon
so has part: feature:1444776-1444817:-1:exon
so has part: feature:1443898-1443948:-1:exon
so has part: feature:1442499-1442615:-1:exon
so has part: feature:1442002-1442055:-1:exon
so has part: feature:1440094-1440162:-1:exon
so has part: feature:1439501-1439599:-1:exon
so has part: feature:1438832-1438930:-1:exon
so has part: feature:1438248-1438284:-1:exon
so has part: feature:1437018-1437117:-1:exon
so has part: feature:1435281-1436582:-1:exon

position:1453938:-1
position: 1453938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1453804-1453938:-1:exon

position:1453804:-1
position: 1453804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1444776-1444817:-1:exon

position:1444776:-1
position: 1444776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1444817:-1
position: 1444817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1443898-1443948:-1:exon

position:1443898:-1
position: 1443898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1443948:-1
position: 1443948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1442499-1442615:-1:exon

position:1442499:-1
position: 1442499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1442615:-1
position: 1442615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1442002-1442055:-1:exon

position:1442002:-1
position: 1442002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1442055:-1
position: 1442055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1440094-1440162:-1:exon

position:1440094:-1
position: 1440094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1440162:-1
position: 1440162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1439501-1439599:-1:exon

position:1439501:-1
position: 1439501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1439599:-1
position: 1439599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1438832-1438930:-1:exon

position:1438832:-1
position: 1438832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1438930:-1
position: 1438930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1438248-1438284:-1:exon

position:1438248:-1
position: 1438248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1438284:-1
position: 1438284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1437018-1437117:-1:exon

position:1437018:-1
position: 1437018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1437117:-1
position: 1437117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1435281-1436582:-1:exon

position:1436582:-1
position: 1436582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ECSCR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ECSCR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endothelial cell-specific chemotaxis regulator isoform X2
translation: MARGSASAEMLLPSLCPLLGLLLLLPGSTASTNSSTPAGTGPSQPTAPSPEVKNHSPEPSVKPTPLTNLSLTSVGQTTTVKPSPTTTRNLTATTERDEKSSGNRSTAAPSPTPRGQDPMRNESTTASATQGASSSQRGASEPITPTPNSSSQLPEPTPTDEKSPLTVAAFGVISFVVILIVVVIILVSVVSLRFKCNHSKDSEDKQKPGTSMVSESCSADTSQKGNSITLISMKNINTNNSMNYPPSEKVL
SIO_010081: ECSCR
subclass of: SO_0000673
so part of: ECSCR
location: complement(join(1436574..1436582,1437018..1437117,1438248..1438284,1438832..1438930,1439501..1439599,1440094..1440162,1442002..1442055,1442499..1442615,1443898..1443948,1444776..1444817,1453804..1453882))
location: region:1436574-1453882:-1
so has part: feature:1453804-1453882:-1:exon
so has part: feature:1444776-1444817:-1:exon
so has part: feature:1443898-1443948:-1:exon
so has part: feature:1442499-1442615:-1:exon
so has part: feature:1442002-1442055:-1:exon
so has part: feature:1440094-1440162:-1:exon
so has part: feature:1439501-1439599:-1:exon
so has part: feature:1438832-1438930:-1:exon
so has part: feature:1438248-1438284:-1:exon
so has part: feature:1437018-1437117:-1:exon
so has part: feature:1436574-1436582:-1:exon

XP_030140003.3
type: Protein
SIO_000068: ncbiprotein

position:1436574:-1
position: 1436574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1453882:-1
position: 1453882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1453804-1453882:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1444776-1444817:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1443898-1443948:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1442499-1442615:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1442002-1442055:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1440094-1440162:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1439501-1439599:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1438832-1438930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1438248-1438284:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1437018-1437117:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1436574-1436582:-1:exon

ECSCR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ECSCR
product: endothelial cell surface expressed chemotaxis and apoptosis regulator, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_030284142.3
SIO_010081: ECSCR
subclass of: SO_0000673
so part of: ECSCR
location: complement(join(1436589..1437117,1438248..1438284,1438832..1438930,1439501..1439599,1440094..1440162,1442002..1442055,1442499..1442615,1443898..1443948,1444776..1444817,1453804..1453943))
location: region:1436589-1453943:-1
so has part: feature:1453804-1453943:-1:exon
so has part: feature:1444776-1444817:-1:exon
so has part: feature:1443898-1443948:-1:exon
so has part: feature:1442499-1442615:-1:exon
so has part: feature:1442002-1442055:-1:exon
so has part: feature:1440094-1440162:-1:exon
so has part: feature:1439501-1439599:-1:exon
so has part: feature:1438832-1438930:-1:exon
so has part: feature:1438248-1438284:-1:exon
so has part: feature:1436589-1437117:-1:exon

position:1436589:-1
position: 1436589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1453804-1453943:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1444776-1444817:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1443898-1443948:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1442499-1442615:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1442002-1442055:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1440094-1440162:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1439501-1439599:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1438832-1438930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1438248-1438284:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1436589-1437117:-1:exon

ECSCR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ECSCR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endothelial cell-specific chemotaxis regulator isoform X1
translation: MARGSASAEMLLPSLCPLLGLLLLLPGSTASTNSSTPAGTGPSQPTAPSPEVKNHSPEPSVKPTPLTNLSLTSVGQTTTVKPSPTTTRNLTATTERDEKSSGNRSTAAPSPTPRGQDPMRNESTTASATQGASSSQRGASEPITPTPNSSSQLPEPTPTDEKSPLTVAAFGVISFVVILIVVVIILVSVVSLRFKCNHSKDSEDKQKPGTSMVSESCSADTSQKGNSITLISMKNINTNNSMNYPPSEKVSLFSLAF
SIO_010081: ECSCR
subclass of: SO_0000673
so part of: ECSCR
location: complement(join(1436991..1437117,1438248..1438284,1438832..1438930,1439501..1439599,1440094..1440162,1442002..1442055,1442499..1442615,1443898..1443948,1444776..1444817,1453804..1453882))
location: region:1436991-1453882:-1
so has part: feature:1453804-1453882:-1:exon
so has part: feature:1444776-1444817:-1:exon
so has part: feature:1443898-1443948:-1:exon
so has part: feature:1442499-1442615:-1:exon
so has part: feature:1442002-1442055:-1:exon
so has part: feature:1440094-1440162:-1:exon
so has part: feature:1439501-1439599:-1:exon
so has part: feature:1438832-1438930:-1:exon
so has part: feature:1438248-1438284:-1:exon
so has part: feature:1436991-1437117:-1:exon

XP_030140002.3
type: Protein
SIO_000068: ncbiprotein

position:1436991:-1
position: 1436991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1453804-1453882:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1444776-1444817:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1443898-1443948:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1442499-1442615:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1442002-1442055:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1440094-1440162:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1439501-1439599:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1438832-1438930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1438248-1438284:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1436991-1437117:-1:exon

SMIM33
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SMIM33
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1456289..1458180
location: region:1456289-1458180:1
so has part: feature:1456289-1458180:1:exon
subclass of: SO_0000010

115497136
type: Gene
SIO_000068: ncbigene

position:1456289:1
position: 1456289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1458180:1
position: 1458180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1456289-1458180:1:exon

SMIM33
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SMIM33
product: small integral membrane protein 33
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030284209.3
SIO_010081: SMIM33
subclass of: SO_0000673
so part of: SMIM33
location: 1456289..1458180
location: region:1456289-1458180:1
so has part: feature:1456289-1458180:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1456289-1458180:1:exon

SMIM33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SMIM33
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small integral membrane protein 33
translation: MNASVAGSQLRQPEPQDVAAFTPVSIVKSVSKKSDALPVISVIVVLFVLLAVCIVLAVHYGPQLRTVQATLQQEPMAPHMDSVILTDWRRLDGHGRMDSAAVTCHCSCNHHLPHGTAEPNVIEITYL
SIO_010081: SMIM33
subclass of: SO_0000673
so part of: SMIM33
location: 1456452..1456835
location: region:1456452-1456835:1
so has part: feature:1456452-1456835:1:exon

XP_030140069.3
type: Protein
SIO_000068: ncbiprotein

position:1456452:1
position: 1456452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1456835:1
position: 1456835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1456452-1456835:1:exon

PCDH12
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PCDH12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1464474..1474581
location: region:1464474-1474581:1
so has part: feature:1464474-1474581:1:exon
subclass of: SO_0000010

100230172
type: Gene
SIO_000068: ncbigene

position:1464474:1
position: 1464474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1474581:1
position: 1474581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1464474-1474581:1:exon

PCDH12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCDH12
product: protocadherin 12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_030283797.3
SIO_010081: PCDH12
subclass of: SO_0000673
so part of: PCDH12
location: join(1464474..1467527,1467930..1468024,1469103..1469284,1473820..1474581)
location: region:1464474-1474581:1
so has part: feature:1464474-1467527:1:exon
so has part: feature:1467930-1468024:1:exon
so has part: feature:1469103-1469284:1:exon
so has part: feature:1473820-1474581:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1464474-1467527:1:exon

position:1467527:1
position: 1467527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1467930-1468024:1:exon

position:1467930:1
position: 1467930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1468024:1
position: 1468024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1469103-1469284:1:exon

position:1469103:1
position: 1469103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1469284:1
position: 1469284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1473820-1474581:1:exon

position:1473820:1
position: 1473820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PCDH12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCDH12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protocadherin-12
translation: MARRCGGAEDSAGMRWPAGQPGAARRGRGGSAGIVLGLSRSALRLPALWWWYLFLSADAQEVATFTVQYRVLEEVPPGTVIGSLAEHFEGGESGEAAETFQLMETPGRFPLHVGSGDGVLSTAGRVDREQLCRHSGPCWVSFNVLAAQNPALIHLEVQVMDVNDNAPRFPTPELELEISESASLRTRIPLDRALDADTGPNALCSYALSPSEHFALEVVPSSDGTRHAELVVVKEVDRELHSSFSLVLTATDHGDPPKSGTALIKIIVLDSNDNSPVFAESSLMVEVREDAQPGTLLVTVTATDPDQGPNGEIEYSLSRHAPPEVLSTFSIDTRTGSILLRLPLDYEETHTYELDVQARDLGANPIPAHCKVLVRVLDVNDNAPDVHVTWAAREPVLSEALPKDSFVALVTASDPDSGTNGQVLCSLSQGYEHFRLKRTNSHSFALLTNASLDRERRAEYNLTLVVRDMGDLSLAVLKHLTICISDVNDNAPAFEKAAYEAAVDENSEAPSFLLTVRATDPDLGSNGKVTYRILDPSALGLVSVDPITGDIFALQAFDYEQVRSLEFLVTAEDGGHPKLASNISIRLAVLDRNDNAPIITTPVLVGGVATLSVLVNVDTGCCWVVPGNGSTQGAAAVTNATLVSCPTNPFLFTITARDVDSGINGALRYDLVGGDDAGLFVLDPFLGQVSLNASNASSLAGSQRELLVRVSDQGDTPLHTLARLRLLFRRHGAFSKMSAQDPGWPSLSVVLLICLAALLGGCVPLLALTLSLRKKDKKDGMAYNCREAEDARRQQQLKKPHRQIQKADIHLVPLLRGRPRDPEPPRACQEEQPGTGSPASPQAPLHLTPTLYRTLRNQRTQKGSEEQQGTFELPVLQRRPCQPHRPKPAVKEAVGAPEAPLHGQSLVKPPMGEPLVPGEQPGGVGTPGQPQPHQQILRSLVRLSLVALAEQSPTGEFAMESPPVQQISQLLSLLHQGQFQPKTNYRGNKYTAKNGSRAAGLDTGLDTDTGLDTDCLSTKDSGHGESEAGDRDSDSAFELSVQQLVGEELETLLEPQAELALKRLTAADPEWVARLSLPLTSSYKENIFCPDSPCSAEDEEAARQDKPRTFETFGKGADPGGGGTRLASTFLSEMSSLFEMILSQKVQAHGEAGAGLLRQLSARGHSLGLGDAAPGL
SIO_010081: PCDH12
subclass of: SO_0000673
so part of: PCDH12
location: join(1464633..1467527,1467930..1468024,1469103..1469284,1473820..1474178)
location: region:1464633-1474178:1
so has part: feature:1464633-1467527:1:exon
so has part: feature:1467930-1468024:1:exon
so has part: feature:1469103-1469284:1:exon
so has part: feature:1473820-1474178:1:exon

XP_030139657.3
type: Protein
SIO_000068: ncbiprotein

position:1464633:1
position: 1464633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1474178:1
position: 1474178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1464633-1467527:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1467930-1468024:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1469103-1469284:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1473820-1474178:1:exon

DELE1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: DELE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1475444..1493664)
location: region:1475444-1493664:-1
so has part: feature:1475444-1493664:-1:exon
subclass of: SO_0000010

100217719
type: Gene
SIO_000068: ncbigene

position:1475444:-1
position: 1475444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1493664:-1
position: 1493664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1475444-1493664:-1:exon

DELE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DELE1
product: DAP3 binding cell death enhancer 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_032750804.2
SIO_010081: DELE1
subclass of: SO_0000673
so part of: DELE1
location: complement(join(1475444..1477474,1478299..1478455,1481719..1481811,1482610..1482768,1483599..1483741,1484458..1484551,1486264..1486319,1492964..1493084,1493165..1493264,1493423..1493664))
location: region:1475444-1493664:-1
so has part: feature:1493423-1493664:-1:exon
so has part: feature:1493165-1493264:-1:exon
so has part: feature:1492964-1493084:-1:exon
so has part: feature:1486264-1486319:-1:exon
so has part: feature:1484458-1484551:-1:exon
so has part: feature:1483599-1483741:-1:exon
so has part: feature:1482610-1482768:-1:exon
so has part: feature:1481719-1481811:-1:exon
so has part: feature:1478299-1478455:-1:exon
so has part: feature:1475444-1477474:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1493423-1493664:-1:exon

position:1493423:-1
position: 1493423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1493165-1493264:-1:exon

position:1493165:-1
position: 1493165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1493264:-1
position: 1493264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1492964-1493084:-1:exon

position:1492964:-1
position: 1492964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1493084:-1
position: 1493084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1486264-1486319:-1:exon

position:1486264:-1
position: 1486264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1486319:-1
position: 1486319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1484458-1484551:-1:exon

position:1484458:-1
position: 1484458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1484551:-1
position: 1484551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1483599-1483741:-1:exon

position:1483599:-1
position: 1483599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1483741:-1
position: 1483741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1482610-1482768:-1:exon

position:1482610:-1
position: 1482610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1482768:-1
position: 1482768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1481719-1481811:-1:exon

position:1481719:-1
position: 1481719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1481811:-1
position: 1481811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1478299-1478455:-1:exon

position:1478299:-1
position: 1478299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1478455:-1
position: 1478455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1475444-1477474:-1:exon

position:1477474:-1
position: 1477474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DELE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: DELE1
product: DAP3 binding cell death enhancer 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XM_030283798.3
SIO_010081: DELE1
subclass of: SO_0000673
so part of: DELE1
location: complement(join(1475444..1477474,1478299..1478455,1481719..1481811,1482610..1482768,1483599..1483741,1484458..1484551,1486264..1486319,1492531..1492674,1492964..1493084,1493165..1493264,1493423..1493663))
location: region:1475444-1493663:-1
so has part: feature:1493423-1493663:-1:exon
so has part: feature:1493165-1493264:-1:exon
so has part: feature:1492964-1493084:-1:exon
so has part: feature:1492531-1492674:-1:exon
so has part: feature:1486264-1486319:-1:exon
so has part: feature:1484458-1484551:-1:exon
so has part: feature:1483599-1483741:-1:exon
so has part: feature:1482610-1482768:-1:exon
so has part: feature:1481719-1481811:-1:exon
so has part: feature:1478299-1478455:-1:exon
so has part: feature:1475444-1477474:-1:exon

position:1493663:-1
position: 1493663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1493423-1493663:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1493165-1493264:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1492964-1493084:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1492531-1492674:-1:exon

position:1492531:-1
position: 1492531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1492674:-1
position: 1492674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1486264-1486319:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1484458-1484551:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1483599-1483741:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482610-1482768:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1481719-1481811:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1478299-1478455:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1475444-1477474:-1:exon

DELE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DELE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: death ligand signal enhancer isoform X2
translation: MWRLLLPGRGRCAPTSARPACAPGLGGGRSPERQPAGQDGPERGGGRRRPLPGLVPRCSVREAVTWGAVGALLLQLLRQIAGLRSLQDARTERRFHRRSPLSPQPAGEFQIPVSSRVGPVIHSAKGDPAHRGHLEEAAFQLQQIFRIDISIALNILGIESMRAGRCRAAFTCFKLAADRGYSKAQFNVGLCYEHGRGTEKDLEKAGFYYCQAASSRHAMAQYRYARYLLQHGPGSLQDRQHKAVALLEQAAGAGITEAQAYLGVFYMRGLQPQEKRGLKYLLQAANSGDAQSRFHVGVCYEQGLGVQQDLAEALRHYGQSAAAGSRRARDRLRAWQQQLQDVHTKHLFPSGLRASSSSPDFWTIEPVSANLHSSQPGQCVVTLPHSWSTGTLHMMLLSSAGWSCAFRARTVPVELQGWEPQHCWQ
SIO_010081: DELE1
subclass of: SO_0000673
so part of: DELE1
location: complement(join(1477218..1477474,1478299..1478455,1481719..1481811,1482610..1482768,1483599..1483741,1484458..1484551,1486264..1486319,1492964..1493084,1493165..1493264,1493423..1493520))
location: region:1477218-1493520:-1
so has part: feature:1493423-1493520:-1:exon
so has part: feature:1493165-1493264:-1:exon
so has part: feature:1492964-1493084:-1:exon
so has part: feature:1486264-1486319:-1:exon
so has part: feature:1484458-1484551:-1:exon
so has part: feature:1483599-1483741:-1:exon
so has part: feature:1482610-1482768:-1:exon
so has part: feature:1481719-1481811:-1:exon
so has part: feature:1478299-1478455:-1:exon
so has part: feature:1477218-1477474:-1:exon

XP_032606695.2
type: Protein
SIO_000068: ncbiprotein

position:1477218:-1
position: 1477218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1493520:-1
position: 1493520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1493423-1493520:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1493165-1493264:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1492964-1493084:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1486264-1486319:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1484458-1484551:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1483599-1483741:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1482610-1482768:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1481719-1481811:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1478299-1478455:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1477218-1477474:-1:exon

DELE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: DELE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: death ligand signal enhancer isoform X1
translation: MWRLLLPGRGRCAPTSARPACAPGLGGGRSPERQPAGQDGPERGGGRRRPLPGLVPRCSVREAVTWGAVGALLLQLLRQIAGLRSLQDARTERRFHRRSPLSPQPAVVTEASNSCPGEQLGSQLLQKARPEAVAENSSSGIPSGPGDRQPWAEAGEFQIPVSSRVGPVIHSAKGDPAHRGHLEEAAFQLQQIFRIDISIALNILGIESMRAGRCRAAFTCFKLAADRGYSKAQFNVGLCYEHGRGTEKDLEKAGFYYCQAASSRHAMAQYRYARYLLQHGPGSLQDRQHKAVALLEQAAGAGITEAQAYLGVFYMRGLQPQEKRGLKYLLQAANSGDAQSRFHVGVCYEQGLGVQQDLAEALRHYGQSAAAGSRRARDRLRAWQQQLQDVHTKHLFPSGLRASSSSPDFWTIEPVSANLHSSQPGQCVVTLPHSWSTGTLHMMLLSSAGWSCAFRARTVPVELQGWEPQHCWQ
SIO_010081: DELE1
subclass of: SO_0000673
so part of: DELE1
location: complement(join(1477218..1477474,1478299..1478455,1481719..1481811,1482610..1482768,1483599..1483741,1484458..1484551,1486264..1486319,1492531..1492674,1492964..1493084,1493165..1493264,1493423..1493520))
location: region:1477218-1493520:-1
so has part: feature:1493423-1493520:-1:exon
so has part: feature:1493165-1493264:-1:exon
so has part: feature:1492964-1493084:-1:exon
so has part: feature:1492531-1492674:-1:exon
so has part: feature:1486264-1486319:-1:exon
so has part: feature:1484458-1484551:-1:exon
so has part: feature:1483599-1483741:-1:exon
so has part: feature:1482610-1482768:-1:exon
so has part: feature:1481719-1481811:-1:exon
so has part: feature:1478299-1478455:-1:exon
so has part: feature:1477218-1477474:-1:exon

XP_030139658.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1493423-1493520:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1493165-1493264:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1492964-1493084:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1492531-1492674:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1486264-1486319:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1484458-1484551:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1483599-1483741:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482610-1482768:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1481719-1481811:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1478299-1478455:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1477218-1477474:-1:exon

LOC121470696
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121470696
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1736696..1738566
location: region:1736696-1738566:1
so has part: feature:1736696-1738566:1:exon
subclass of: SO_0000011

121470696
type: Gene
SIO_000068: ncbigene

position:1736696:1
position: 1736696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1738566:1
position: 1738566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1736696-1738566:1:exon

LOC121470696
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121470696
product: uncharacterized LOC121470696
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_005981856.1
SIO_010081: LOC121470696
subclass of: SO_0000673
so part of: LOC121470696
location: join(1736696..1736945,1737732..1738566)
location: region:1736696-1738566:1
so has part: feature:1736696-1736945:1:exon
so has part: feature:1737732-1738566:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1736696-1736945:1:exon

position:1736945:1
position: 1736945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1737732-1738566:1:exon

position:1737732:1
position: 1737732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115497132
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497132
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1739086..1741667
location: region:1739086-1741667:1
so has part: feature:1739086-1741667:1:exon
subclass of: SO_0000011

115497132
type: Gene
SIO_000068: ncbigene

position:1739086:1
position: 1739086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1741667:1
position: 1741667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1739086-1741667:1:exon

LOC115497132
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497132
product: uncharacterized LOC115497132
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_003962711.3
SIO_010081: LOC115497132
subclass of: SO_0000673
so part of: LOC115497132
location: join(1739086..1739301,1739763..1741667)
location: region:1739086-1741667:1
so has part: feature:1739086-1739301:1:exon
so has part: feature:1739763-1741667:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1739086-1739301:1:exon

position:1739301:1
position: 1739301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1739763-1741667:1:exon

position:1739763:1
position: 1739763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PCDH1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PCDH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1820049..1879278)
location: region:1820049-1879278:-1
so has part: feature:1820049-1879278:-1:exon
subclass of: SO_0000010

100226382
type: Gene
SIO_000068: ncbigene

position:1820049:-1
position: 1820049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1879278:-1
position: 1879278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1820049-1879278:-1:exon

PCDH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCDH1
product: protocadherin 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 3 long SRA reads, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
transcript id: XM_030284225.3
SIO_010081: PCDH1
subclass of: SO_0000673
so part of: PCDH1
location: complement(join(1820049..1823890,1850465..1850684,1867214..1869406,1870947..1871761,1879144..1879278))
location: region:1820049-1879278:-1
so has part: feature:1879144-1879278:-1:exon
so has part: feature:1870947-1871761:-1:exon
so has part: feature:1867214-1869406:-1:exon
so has part: feature:1850465-1850684:-1:exon
so has part: feature:1820049-1823890:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1879144-1879278:-1:exon

position:1879144:-1
position: 1879144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1870947-1871761:-1:exon

position:1870947:-1
position: 1870947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1871761:-1
position: 1871761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1867214-1869406:-1:exon

position:1867214:-1
position: 1867214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1869406:-1
position: 1869406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1850465-1850684:-1:exon

position:1850465:-1
position: 1850465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1850684:-1
position: 1850684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1820049-1823890:-1:exon

position:1823890:-1
position: 1823890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PCDH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCDH1
product: protocadherin 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 7 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
transcript id: XM_030284223.3
SIO_010081: PCDH1
subclass of: SO_0000673
so part of: PCDH1
location: complement(join(1820049..1823890,1850465..1850684,1867214..1869406,1870947..1871761,1877939..1878321))
location: region:1820049-1878321:-1
so has part: feature:1877939-1878321:-1:exon
so has part: feature:1870947-1871761:-1:exon
so has part: feature:1867214-1869406:-1:exon
so has part: feature:1850465-1850684:-1:exon
so has part: feature:1820049-1823890:-1:exon

position:1878321:-1
position: 1878321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1877939-1878321:-1:exon

position:1877939:-1
position: 1877939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1870947-1871761:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1867214-1869406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1850465-1850684:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1820049-1823890:-1:exon

PCDH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCDH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protocadherin-1 isoform X1
translation: METPRDQRAGARHGAQRRHHPTPLQRRMNPLASCLGLWLLCQLPALASGTRAVYKVQEEQPPNSLIGSLASDYGLPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQHLLPGEPCFLEFEVSITNLNANSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNVGTLFPIPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDIGTLKFSVMAKDKGANPKSARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNSLKVQVMDVNDNAPVFSQSFTEVAFPENNEPDELVMEVSATDADSGSNAKLVYSLVTDPSSKGSFTIDPDSGEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGTASVAINVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILPHTSPGQQVSKVKAEDIDSGINAELIYSITGGNPFELFQISPQSGDITLEKEILRKHHGLHRLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKSKNKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNALKLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEIPLTQTSDFQPATTPSAQTTKREIYL
SIO_010081: PCDH1
subclass of: SO_0000673
so part of: PCDH1
location: complement(join(1823505..1823890,1850465..1850684,1867214..1869406,1870947..1871761,1877939..1878002))
location: region:1823505-1878002:-1
so has part: feature:1877939-1878002:-1:exon
so has part: feature:1870947-1871761:-1:exon
so has part: feature:1867214-1869406:-1:exon
so has part: feature:1850465-1850684:-1:exon
so has part: feature:1823505-1823890:-1:exon

XP_030140083.1
type: Protein
SIO_000068: ncbiprotein

position:1823505:-1
position: 1823505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1878002:-1
position: 1878002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1877939-1878002:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1870947-1871761:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1867214-1869406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1850465-1850684:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1823505-1823890:-1:exon

PCDH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCDH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protocadherin-1 isoform X3
translation: MNPLASCLGLWLLCQLPALASGTRAVYKVQEEQPPNSLIGSLASDYGLPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQHLLPGEPCFLEFEVSITNLNANSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNVGTLFPIPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDIGTLKFSVMAKDKGANPKSARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNSLKVQVMDVNDNAPVFSQSFTEVAFPENNEPDELVMEVSATDADSGSNAKLVYSLVTDPSSKGSFTIDPDSGEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGTASVAINVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILPHTSPGQQVSKVKAEDIDSGINAELIYSITGGNPFELFQISPQSGDITLEKEILRKHHGLHRLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKSKNKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNALKLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEIPLTQTSDFQPATTPSAQTTKREIYL
SIO_010081: PCDH1
subclass of: SO_0000673
so part of: PCDH1
location: complement(join(1823505..1823890,1850465..1850684,1867214..1869406,1870947..1871744))
location: region:1823505-1871744:-1
so has part: feature:1870947-1871744:-1:exon
so has part: feature:1867214-1869406:-1:exon
so has part: feature:1850465-1850684:-1:exon
so has part: feature:1823505-1823890:-1:exon

XP_030140085.1
type: Protein
SIO_000068: ncbiprotein

position:1871744:-1
position: 1871744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1870947-1871744:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1867214-1869406:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1850465-1850684:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1823505-1823890:-1:exon

PCDH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PCDH1
product: protocadherin 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 1 long SRA read, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
transcript id: XM_030284224.3
SIO_010081: PCDH1
subclass of: SO_0000673
so part of: PCDH1
location: complement(join(1823669..1823890,1826044..1826086,1850465..1850684,1867214..1869406,1870947..1871761,1877939..1878321))
location: region:1823669-1878321:-1
so has part: feature:1877939-1878321:-1:exon
so has part: feature:1870947-1871761:-1:exon
so has part: feature:1867214-1869406:-1:exon
so has part: feature:1850465-1850684:-1:exon
so has part: feature:1826044-1826086:-1:exon
so has part: feature:1823669-1823890:-1:exon

position:1823669:-1
position: 1823669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1877939-1878321:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1870947-1871761:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1867214-1869406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1850465-1850684:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1826044-1826086:-1:exon

position:1826044:-1
position: 1826044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1826086:-1
position: 1826086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1823669-1823890:-1:exon

PCDH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PCDH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protocadherin-1 isoform X2
translation: METPRDQRAGARHGAQRRHHPTPLQRRMNPLASCLGLWLLCQLPALASGTRAVYKVQEEQPPNSLIGSLASDYGLPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQHLLPGEPCFLEFEVSITNLNANSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNVGTLFPIPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDIGTLKFSVMAKDKGANPKSARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNSLKVQVMDVNDNAPVFSQSFTEVAFPENNEPDELVMEVSATDADSGSNAKLVYSLVTDPSSKGSFTIDPDSGEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGTASVAINVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILPHTSPGQQVSKVKAEDIDSGINAELIYSITGGNPFELFQISPQSGDITLEKEILRKHHGLHRLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKSKNKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENESPERSRL
SIO_010081: PCDH1
subclass of: SO_0000673
so part of: PCDH1
location: complement(join(1826061..1826086,1850465..1850684,1867214..1869406,1870947..1871761,1877939..1878002))
location: region:1826061-1878002:-1
so has part: feature:1877939-1878002:-1:exon
so has part: feature:1870947-1871761:-1:exon
so has part: feature:1867214-1869406:-1:exon
so has part: feature:1850465-1850684:-1:exon
so has part: feature:1826061-1826086:-1:exon

XP_030140084.1
type: Protein
SIO_000068: ncbiprotein

position:1826061:-1
position: 1826061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1877939-1878002:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1870947-1871761:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1867214-1869406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1850465-1850684:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1826061-1826086:-1:exon

LOC121470693
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121470693
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1999974..2002834
location: region:1999974-2002834:1
so has part: feature:1999974-2002834:1:exon
subclass of: SO_0000011

121470693
type: Gene
SIO_000068: ncbigene

position:1999974:1
position: 1999974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2002834:1
position: 2002834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1999974-2002834:1:exon

LOC121470693
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121470693
product: uncharacterized LOC121470693
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_005981853.1
SIO_010081: LOC121470693
subclass of: SO_0000673
so part of: LOC121470693
location: join(1999974..2000379,2002475..2002834)
location: region:1999974-2002834:1
so has part: feature:1999974-2000379:1:exon
so has part: feature:2002475-2002834:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1999974-2000379:1:exon

position:2000379:1
position: 2000379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2002475-2002834:1:exon

position:2002475:1
position: 2002475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115497088
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497088
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2017066..2018864)
location: region:2017066-2018864:-1
so has part: feature:2017066-2018864:-1:exon
subclass of: SO_0000011

115497088
type: Gene
SIO_000068: ncbigene

position:2017066:-1
position: 2017066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2018864:-1
position: 2018864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2017066-2018864:-1:exon

LOC115497088
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497088
product: uncharacterized LOC115497088
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_003962662.3
SIO_010081: LOC115497088
subclass of: SO_0000673
so part of: LOC115497088
location: complement(join(2017066..2017326,2017555..2017625,2018800..2018864))
location: region:2017066-2018864:-1
so has part: feature:2018800-2018864:-1:exon
so has part: feature:2017555-2017625:-1:exon
so has part: feature:2017066-2017326:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2018800-2018864:-1:exon

position:2018800:-1
position: 2018800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2017555-2017625:-1:exon

position:2017555:-1
position: 2017555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2017625:-1
position: 2017625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2017066-2017326:-1:exon

position:2017326:-1
position: 2017326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

IRF1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: IRF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2023155..2030126)
location: region:2023155-2030126:-1
so has part: feature:2023155-2030126:-1:exon
subclass of: SO_0000010

100223856
type: Gene
SIO_000068: ncbigene

position:2023155:-1
position: 2023155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2030126:-1
position: 2030126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2023155-2030126:-1:exon

IRF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: IRF1
product: interferon regulatory factor 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_030283963.3
SIO_010081: IRF1
subclass of: SO_0000673
so part of: IRF1
location: complement(join(2023155..2024214,2024658..2024793,2025625..2025668,2026276..2026401,2026570..2026705,2026819..2026868,2027560..2027659,2028620..2028713,2029982..2030126))
location: region:2023155-2030126:-1
so has part: feature:2029982-2030126:-1:exon
so has part: feature:2028620-2028713:-1:exon
so has part: feature:2027560-2027659:-1:exon
so has part: feature:2026819-2026868:-1:exon
so has part: feature:2026570-2026705:-1:exon
so has part: feature:2026276-2026401:-1:exon
so has part: feature:2025625-2025668:-1:exon
so has part: feature:2024658-2024793:-1:exon
so has part: feature:2023155-2024214:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2029982-2030126:-1:exon

position:2029982:-1
position: 2029982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2028620-2028713:-1:exon

position:2028620:-1
position: 2028620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2028713:-1
position: 2028713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2027560-2027659:-1:exon

position:2027560:-1
position: 2027560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2027659:-1
position: 2027659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2026819-2026868:-1:exon

position:2026819:-1
position: 2026819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2026868:-1
position: 2026868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2026570-2026705:-1:exon

position:2026570:-1
position: 2026570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2026705:-1
position: 2026705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2026276-2026401:-1:exon

position:2026276:-1
position: 2026276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2026401:-1
position: 2026401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2025625-2025668:-1:exon

position:2025625:-1
position: 2025625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2025668:-1
position: 2025668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2024658-2024793:-1:exon

position:2024658:-1
position: 2024658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2024793:-1
position: 2024793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2023155-2024214:-1:exon

position:2024214:-1
position: 2024214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

IRF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: IRF1
product: interferon regulatory factor 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns
transcript id: XM_030283961.3
SIO_010081: IRF1
subclass of: SO_0000673
so part of: IRF1
location: complement(join(2023155..2024214,2024658..2024793,2025625..2025668,2026276..2026401,2026570..2026705,2026819..2026868,2027192..2027368,2027560..2027659,2028620..2028713,2029982..2030126))
location: region:2023155-2030126:-1
so has part: feature:2029982-2030126:-1:exon
so has part: feature:2028620-2028713:-1:exon
so has part: feature:2027560-2027659:-1:exon
so has part: feature:2027192-2027368:-1:exon
so has part: feature:2026819-2026868:-1:exon
so has part: feature:2026570-2026705:-1:exon
so has part: feature:2026276-2026401:-1:exon
so has part: feature:2025625-2025668:-1:exon
so has part: feature:2024658-2024793:-1:exon
so has part: feature:2023155-2024214:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2029982-2030126:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2028620-2028713:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2027560-2027659:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2027192-2027368:-1:exon

position:2027192:-1
position: 2027192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2027368:-1
position: 2027368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2026819-2026868:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2026570-2026705:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2026276-2026401:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2025625-2025668:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2024658-2024793:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2023155-2024214:-1:exon

IRF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: IRF1
product: interferon regulatory factor 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_030283962.3
SIO_010081: IRF1
subclass of: SO_0000673
so part of: IRF1
location: complement(join(2023155..2024214,2024658..2024793,2025625..2025668,2026276..2026401,2026570..2026705,2026819..2026868,2027192..2027368,2027560..2027659,2028620..2028713,2028866..2028981))
location: region:2023155-2028981:-1
so has part: feature:2028866-2028981:-1:exon
so has part: feature:2028620-2028713:-1:exon
so has part: feature:2027560-2027659:-1:exon
so has part: feature:2027192-2027368:-1:exon
so has part: feature:2026819-2026868:-1:exon
so has part: feature:2026570-2026705:-1:exon
so has part: feature:2026276-2026401:-1:exon
so has part: feature:2025625-2025668:-1:exon
so has part: feature:2024658-2024793:-1:exon
so has part: feature:2023155-2024214:-1:exon

position:2028981:-1
position: 2028981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2028866-2028981:-1:exon

position:2028866:-1
position: 2028866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2028620-2028713:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2027560-2027659:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2027192-2027368:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2026819-2026868:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2026570-2026705:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2026276-2026401:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2025625-2025668:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2024658-2024793:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2023155-2024214:-1:exon

IRF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: IRF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interferon regulatory factor 1 isoform X2
translation: MPVSRMRMRPWLEMQIDSNQIPGLIWINKEKRIFQIPWKHAAKHGWDMEKDACLFRSWAIHTERKSKSSREVRNKSKRKCYEETMLKESAESLTSTPLPDDHSGYTIHDYAGQEVEVESTAMTLDLSSCEVSGSLTDWRPAMEVTMADSTNDLYQLQVSPLASSSEVTDEDEEEINPDIFKLLGSAQDWHNTSIGGKGFLTNESGTQTLCSTYSYKEQDGDIDTTSGELDFRFFDQKDFSWLDTVRPTMQVIPCGL
SIO_010081: IRF1
subclass of: SO_0000673
so part of: IRF1
location: complement(join(2024123..2024214,2024658..2024793,2025625..2025668,2026276..2026401,2026570..2026705,2026819..2026868,2027560..2027659,2028620..2028706))
location: region:2024123-2028706:-1
so has part: feature:2028620-2028706:-1:exon
so has part: feature:2027560-2027659:-1:exon
so has part: feature:2026819-2026868:-1:exon
so has part: feature:2026570-2026705:-1:exon
so has part: feature:2026276-2026401:-1:exon
so has part: feature:2025625-2025668:-1:exon
so has part: feature:2024658-2024793:-1:exon
so has part: feature:2024123-2024214:-1:exon

XP_030139823.1
type: Protein
SIO_000068: ncbiprotein

position:2024123:-1
position: 2024123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2028706:-1
position: 2028706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2028620-2028706:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2027560-2027659:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2026819-2026868:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2026570-2026705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2026276-2026401:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2025625-2025668:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2024658-2024793:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2024123-2024214:-1:exon

IRF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: IRF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interferon regulatory factor 1 isoform X1
translation: MPVSRMRMRPWLEMQIDSNQIPGLIWINKEKRIFQIPWKHAAKHGWDMEKDACLFRSWAIHTGRYKEGEKDPDPKTWKANFRCAMNSLPDIEEVKDKSINRGSSAVRVYRMLPPLTKHQKKERKSKSSREVRNKSKRKCYEETMLKESAESLTSTPLPDDHSGYTIHDYAGQEVEVESTAMTLDLSSCEVSGSLTDWRPAMEVTMADSTNDLYQLQVSPLASSSEVTDEDEEEINPDIFKLLGSAQDWHNTSIGGKGFLTNESGTQTLCSTYSYKEQDGDIDTTSGELDFRFFDQKDFSWLDTVRPTMQVIPCGL
SIO_010081: IRF1
subclass of: SO_0000673
so part of: IRF1
location: complement(join(2024123..2024214,2024658..2024793,2025625..2025668,2026276..2026401,2026570..2026705,2026819..2026868,2027192..2027368,2027560..2027659,2028620..2028706))
location: region:2024123-2028706:-1
so has part: feature:2028620-2028706:-1:exon
so has part: feature:2027560-2027659:-1:exon
so has part: feature:2027192-2027368:-1:exon
so has part: feature:2026819-2026868:-1:exon
so has part: feature:2026570-2026705:-1:exon
so has part: feature:2026276-2026401:-1:exon
so has part: feature:2025625-2025668:-1:exon
so has part: feature:2024658-2024793:-1:exon
so has part: feature:2024123-2024214:-1:exon

XP_030139821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2028620-2028706:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2027560-2027659:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2027192-2027368:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2026819-2026868:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2026570-2026705:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2026276-2026401:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2025625-2025668:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2024658-2024793:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2024123-2024214:-1:exon

IRF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: IRF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interferon regulatory factor 1 isoform X1
translation: MPVSRMRMRPWLEMQIDSNQIPGLIWINKEKRIFQIPWKHAAKHGWDMEKDACLFRSWAIHTGRYKEGEKDPDPKTWKANFRCAMNSLPDIEEVKDKSINRGSSAVRVYRMLPPLTKHQKKERKSKSSREVRNKSKRKCYEETMLKESAESLTSTPLPDDHSGYTIHDYAGQEVEVESTAMTLDLSSCEVSGSLTDWRPAMEVTMADSTNDLYQLQVSPLASSSEVTDEDEEEINPDIFKLLGSAQDWHNTSIGGKGFLTNESGTQTLCSTYSYKEQDGDIDTTSGELDFRFFDQKDFSWLDTVRPTMQVIPCGL
SIO_010081: IRF1
subclass of: SO_0000673
so part of: IRF1
location: complement(join(2024123..2024214,2024658..2024793,2025625..2025668,2026276..2026401,2026570..2026705,2026819..2026868,2027192..2027368,2027560..2027659,2028620..2028706))
location: region:2024123-2028706:-1
so has part: feature:2028620-2028706:-1:exon
so has part: feature:2027560-2027659:-1:exon
so has part: feature:2027192-2027368:-1:exon
so has part: feature:2026819-2026868:-1:exon
so has part: feature:2026570-2026705:-1:exon
so has part: feature:2026276-2026401:-1:exon
so has part: feature:2025625-2025668:-1:exon
so has part: feature:2024658-2024793:-1:exon
so has part: feature:2024123-2024214:-1:exon

XP_030139822.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2028620-2028706:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2027560-2027659:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2027192-2027368:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2026819-2026868:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2026570-2026705:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2026276-2026401:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2025625-2025668:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2024658-2024793:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2024123-2024214:-1:exon

RAD50
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: RAD50
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2055895..2075271
location: region:2055895-2075271:1
so has part: feature:2055895-2075271:1:exon
subclass of: SO_0000010

100221910
type: Gene
SIO_000068: ncbigene

position:2055895:1
position: 2055895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2075271:1
position: 2075271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2055895-2075271:1:exon

RAD50
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: RAD50
product: RAD50 double strand break repair protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 8 long SRA reads, 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_032750803.2
SIO_010081: RAD50
subclass of: SO_0000673
so part of: RAD50
location: join(2055895..2055965,2056922..2057101,2057498..2057581,2057816..2057967,2058783..2058968,2059114..2059318,2059732..2059860,2060079..2060244,2060923..2061116,2061650..2061856,2062707..2062889,2063093..2063250,2063963..2064138,2064234..2064471,2064978..2065167,2065998..2066124,2066351..2066544,2066853..2066963,2067503..2067595,2067682..2067795,2068583..2068710,2069474..2069698,2072074..2072159,2072561..2072703,2074063..2074196,2074521..2075271)
location: region:2055895-2075271:1
so has part: feature:2055895-2055965:1:exon
so has part: feature:2056922-2057101:1:exon
so has part: feature:2057498-2057581:1:exon
so has part: feature:2057816-2057967:1:exon
so has part: feature:2058783-2058968:1:exon
so has part: feature:2059114-2059318:1:exon
so has part: feature:2059732-2059860:1:exon
so has part: feature:2060079-2060244:1:exon
so has part: feature:2060923-2061116:1:exon
so has part: feature:2061650-2061856:1:exon
so has part: feature:2062707-2062889:1:exon
so has part: feature:2063093-2063250:1:exon
so has part: feature:2063963-2064138:1:exon
so has part: feature:2064234-2064471:1:exon
so has part: feature:2064978-2065167:1:exon
so has part: feature:2065998-2066124:1:exon
so has part: feature:2066351-2066544:1:exon
so has part: feature:2066853-2066963:1:exon
so has part: feature:2067503-2067595:1:exon
so has part: feature:2067682-2067795:1:exon
so has part: feature:2068583-2068710:1:exon
so has part: feature:2069474-2069698:1:exon
so has part: feature:2072074-2072159:1:exon
so has part: feature:2072561-2072703:1:exon
so has part: feature:2074063-2074196:1:exon
so has part: feature:2074521-2075271:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2055895-2055965:1:exon

position:2055965:1
position: 2055965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2056922-2057101:1:exon

position:2056922:1
position: 2056922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2057101:1
position: 2057101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2057498-2057581:1:exon

position:2057498:1
position: 2057498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2057581:1
position: 2057581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2057816-2057967:1:exon

position:2057816:1
position: 2057816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2057967:1
position: 2057967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2058783-2058968:1:exon

position:2058783:1
position: 2058783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2058968:1
position: 2058968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2059114-2059318:1:exon

position:2059114:1
position: 2059114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2059318:1
position: 2059318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2059732-2059860:1:exon

position:2059732:1
position: 2059732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2059860:1
position: 2059860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2060079-2060244:1:exon

position:2060079:1
position: 2060079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2060244:1
position: 2060244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2060923-2061116:1:exon

position:2060923:1
position: 2060923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2061116:1
position: 2061116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2061650-2061856:1:exon

position:2061650:1
position: 2061650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2061856:1
position: 2061856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2062707-2062889:1:exon

position:2062707:1
position: 2062707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2062889:1
position: 2062889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2063093-2063250:1:exon

position:2063093:1
position: 2063093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2063250:1
position: 2063250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2063963-2064138:1:exon

position:2063963:1
position: 2063963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2064138:1
position: 2064138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2064234-2064471:1:exon

position:2064234:1
position: 2064234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2064471:1
position: 2064471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2064978-2065167:1:exon

position:2064978:1
position: 2064978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2065167:1
position: 2065167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2065998-2066124:1:exon

position:2065998:1
position: 2065998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2066124:1
position: 2066124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2066351-2066544:1:exon

position:2066351:1
position: 2066351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2066544:1
position: 2066544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2066853-2066963:1:exon

position:2066853:1
position: 2066853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2066963:1
position: 2066963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2067503-2067595:1:exon

position:2067503:1
position: 2067503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2067595:1
position: 2067595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2067682-2067795:1:exon

position:2067682:1
position: 2067682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2067795:1
position: 2067795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2068583-2068710:1:exon

position:2068583:1
position: 2068583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2068710:1
position: 2068710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:2069474-2069698:1:exon

position:2069474:1
position: 2069474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2069698:1
position: 2069698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:2072074-2072159:1:exon

position:2072074:1
position: 2072074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2072159:1
position: 2072159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:2072561-2072703:1:exon

position:2072561:1
position: 2072561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2072703:1
position: 2072703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:2074063-2074196:1:exon

position:2074063:1
position: 2074063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2074196:1
position: 2074196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:2074521-2075271:1:exon

position:2074521:1
position: 2074521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RAD50
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: RAD50
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA repair protein RAD50
translation: MSRIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPGTKGKTFVHDPKVANETDVRAQIRLQFRDVNGQVMAVQRSMLCTQKGKTPEFKTLESVITRTKHGEKVSLSSKCAEIDREMISALGVSKAVLNNVIFCHQEESNWPLSEGKALKQKFDEIFSATRYIKALEALRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLAASKENVISIENQLEPLKSSLAVVEQNLTKVMRLDNEVKALESRKRQMEKDNQDLQQKMEEVFQGTDEQLRDRYQNHQKIVKEKEKRLLDCKRDLDRATKECQRFNSEKSELLIERGRLQLQADRHQEHIVTRDSLIQSLAAQLELDGFEQAPFTERHIASFRRLVKDRQDRDTEAANRMMREFAQKETMKQKQIDEIRDKKTGLERTIDLKSDIQNKKQAELKNVKCELQQLEGFSDRISELDEEIGKMEHELEKAERNSNVETLEQEVQTLQNEKINLDKALRRLDQEMEQLNLHTTTITQMEMLKKDKAEKEDQIRKVKSRHSEELTSLLGYFPNKKQLEDWLHGKNKKINQTRDTLANLNKRLASVEYDKTYASNELKKKEAQLSSHEAKLFDVCGSQDFDSDLNKLQDEIEKSSKQRAVLAGATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELKRKEKKRDEMMSLKPLRRTVAELQDKEIPDLRSKIQNANRDLTGLKGEIEEQESLLQTALSEEEGAKARLQDITLMERYQTDIRDVERKIAQQEAKLLGVNLSRTVHQVSKEKQDKKHLWDTVTSKIELNQKLKQDQQSQIQQLRSAVNDLKAEKLQIVSSMQRRRQLEEQTVEVTTEVQALCREIKEAEEQVLPLDAKLDKLQQEKEELVNKRTASNKETQDKMNSINEKVKDIYKYVKEIENYIQQGKEDYKKQKESELDEVNSRLAACEKQKEKINKEMEMTRQDIDTQKIRERWLEDNLTLRKRNEELKEVEDNIKQLMKEMGEMKVPQMKNEQKHLEEKIESLKRNHHVALGRQRGFEEEIVRFRKELREPQFKDAEEKYRDMMIVMRTTELVNKDLDLYYKALDKAIMTFHSMKMEEINKIIRDLWRSIYRGQDIEYIEIRSDADESVSATDKRRNYNYRVVMVKGDTALDMRGRCSAGQKVLASLIIRLALAETFCINCGILALDEPTTNLDRENIESLAHALVEIIKSRLHQRNFQLLVITHDEDFVELLGRSEYVETFYRIRKNIDQCSEIMKCSVSSLGSYVH
SIO_010081: RAD50
subclass of: SO_0000673
so part of: RAD50
location: join(2056973..2057101,2057498..2057581,2057816..2057967,2058783..2058968,2059114..2059318,2059732..2059860,2060079..2060244,2060923..2061116,2061650..2061856,2062707..2062889,2063093..2063250,2063963..2064138,2064234..2064471,2064978..2065167,2065998..2066124,2066351..2066544,2066853..2066963,2067503..2067595,2067682..2067795,2068583..2068710,2069474..2069698,2072074..2072159,2072561..2072703,2074063..2074196,2074521..2074707)
location: region:2056973-2074707:1
so has part: feature:2056973-2057101:1:exon
so has part: feature:2057498-2057581:1:exon
so has part: feature:2057816-2057967:1:exon
so has part: feature:2058783-2058968:1:exon
so has part: feature:2059114-2059318:1:exon
so has part: feature:2059732-2059860:1:exon
so has part: feature:2060079-2060244:1:exon
so has part: feature:2060923-2061116:1:exon
so has part: feature:2061650-2061856:1:exon
so has part: feature:2062707-2062889:1:exon
so has part: feature:2063093-2063250:1:exon
so has part: feature:2063963-2064138:1:exon
so has part: feature:2064234-2064471:1:exon
so has part: feature:2064978-2065167:1:exon
so has part: feature:2065998-2066124:1:exon
so has part: feature:2066351-2066544:1:exon
so has part: feature:2066853-2066963:1:exon
so has part: feature:2067503-2067595:1:exon
so has part: feature:2067682-2067795:1:exon
so has part: feature:2068583-2068710:1:exon
so has part: feature:2069474-2069698:1:exon
so has part: feature:2072074-2072159:1:exon
so has part: feature:2072561-2072703:1:exon
so has part: feature:2074063-2074196:1:exon
so has part: feature:2074521-2074707:1:exon

XP_032606694.2
type: Protein
SIO_000068: ncbiprotein

position:2056973:1
position: 2056973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2074707:1
position: 2074707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2056973-2057101:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2057498-2057581:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2057816-2057967:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2058783-2058968:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2059114-2059318:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2059732-2059860:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2060079-2060244:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2060923-2061116:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2061650-2061856:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2062707-2062889:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2063093-2063250:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2063963-2064138:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2064234-2064471:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2064978-2065167:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2065998-2066124:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2066351-2066544:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2066853-2066963:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2067503-2067595:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2067682-2067795:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2068583-2068710:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2069474-2069698:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2072074-2072159:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2072561-2072703:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2074063-2074196:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2074521-2074707:1:exon

LOC121470690
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121470690
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2076113..2079243
location: region:2076113-2079243:1
so has part: feature:2076113-2079243:1:exon
subclass of: SO_0000011

121470690
type: Gene
SIO_000068: ncbigene

position:2076113:1
position: 2076113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2079243:1
position: 2079243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2076113-2079243:1:exon

LOC121470690
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121470690
product: uncharacterized LOC121470690
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_005981850.1
SIO_010081: LOC121470690
subclass of: SO_0000673
so part of: LOC121470690
location: join(2076113..2078322,2078829..2079243)
location: region:2076113-2079243:1
so has part: feature:2076113-2078322:1:exon
so has part: feature:2078829-2079243:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2076113-2078322:1:exon

position:2078322:1
position: 2078322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2078829-2079243:1:exon

position:2078829:1
position: 2078829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100231557
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC100231557
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2088990..2091091
location: region:2088990-2091091:1
so has part: feature:2088990-2091091:1:exon
subclass of: SO_0000010

100231557
type: Gene
SIO_000068: ncbigene

position:2088990:1
position: 2088990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2091091:1
position: 2091091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2088990-2091091:1:exon

LOC100231557
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100231557
product: uncharacterized LOC100231557
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041718987.1
SIO_010081: LOC100231557
subclass of: SO_0000673
so part of: LOC100231557
location: join(2088990..2089133,2089349..2089396,2090661..2090840,2090993..2091091)
location: region:2088990-2091091:1
so has part: feature:2088990-2089133:1:exon
so has part: feature:2089349-2089396:1:exon
so has part: feature:2090661-2090840:1:exon
so has part: feature:2090993-2091091:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2088990-2089133:1:exon

position:2089133:1
position: 2089133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2089349-2089396:1:exon

position:2089349:1
position: 2089349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2089396:1
position: 2089396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2090661-2090840:1:exon

position:2090661:1
position: 2090661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2090840:1
position: 2090840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2090993-2091091:1:exon

position:2090993:1
position: 2090993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100231557
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100231557
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC100231557
translation: MSILVQVLLTLLVLSACLGDVVAPWPQPLRTSILKESIKLLDQLQQMEVSCNKMNVINIFADHKHDGTKAFLKESCVFSQRGNNTEILCKAATIAQEHQSCHRYLGGLYYNLLSLAWGSRARHKKPCPVAAGSTTSLKNFLNDLHHVLQEEYKSQK
SIO_010081: LOC100231557
subclass of: SO_0000673
so part of: LOC100231557
location: join(2088990..2089133,2089349..2089396,2090661..2090840,2090993..2091091)
location: region:2088990-2091091:1
so has part: feature:2088990-2089133:1:exon
so has part: feature:2089349-2089396:1:exon
so has part: feature:2090661-2090840:1:exon
so has part: feature:2090993-2091091:1:exon

XP_041574921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2088990-2089133:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2089349-2089396:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2090661-2090840:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2090993-2091091:1:exon

KIF3A
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: KIF3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2091574..2110027)
location: region:2091574-2110027:-1
so has part: feature:2091574-2110027:-1:exon
subclass of: SO_0000010

100228676
type: Gene
SIO_000068: ncbigene

position:2091574:-1
position: 2091574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2110027:-1
position: 2110027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2091574-2110027:-1:exon

KIF3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: KIF3A
product: kinesin family member 3A, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 5 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
transcript id: XM_030284341.3
SIO_010081: KIF3A
subclass of: SO_0000673
so part of: KIF3A
location: complement(join(2091574..2093938,2094467..2094591,2094799..2094867,2095017..2095070,2095715..2095840,2096598..2096708,2097004..2097184,2097990..2098146,2103249..2103338,2104327..2104501,2104885..2105082,2105750..2105889,2106650..2106755,2107223..2107307,2107570..2107714,2108359..2108641,2109925..2110027))
location: region:2091574-2110027:-1
so has part: feature:2109925-2110027:-1:exon
so has part: feature:2108359-2108641:-1:exon
so has part: feature:2107570-2107714:-1:exon
so has part: feature:2107223-2107307:-1:exon
so has part: feature:2106650-2106755:-1:exon
so has part: feature:2105750-2105889:-1:exon
so has part: feature:2104885-2105082:-1:exon
so has part: feature:2104327-2104501:-1:exon
so has part: feature:2103249-2103338:-1:exon
so has part: feature:2097990-2098146:-1:exon
so has part: feature:2097004-2097184:-1:exon
so has part: feature:2096598-2096708:-1:exon
so has part: feature:2095715-2095840:-1:exon
so has part: feature:2095017-2095070:-1:exon
so has part: feature:2094799-2094867:-1:exon
so has part: feature:2094467-2094591:-1:exon
so has part: feature:2091574-2093938:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2109925-2110027:-1:exon

position:2109925:-1
position: 2109925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2108359-2108641:-1:exon

position:2108359:-1
position: 2108359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2108641:-1
position: 2108641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2107570-2107714:-1:exon

position:2107570:-1
position: 2107570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2107714:-1
position: 2107714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2107223-2107307:-1:exon

position:2107223:-1
position: 2107223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2107307:-1
position: 2107307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2106650-2106755:-1:exon

position:2106650:-1
position: 2106650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2106755:-1
position: 2106755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2105750-2105889:-1:exon

position:2105750:-1
position: 2105750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2105889:-1
position: 2105889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2104885-2105082:-1:exon

position:2104885:-1
position: 2104885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2105082:-1
position: 2105082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2104327-2104501:-1:exon

position:2104327:-1
position: 2104327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2104501:-1
position: 2104501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2103249-2103338:-1:exon

position:2103249:-1
position: 2103249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2103338:-1
position: 2103338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2097990-2098146:-1:exon

position:2097990:-1
position: 2097990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2098146:-1
position: 2098146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2097004-2097184:-1:exon

position:2097004:-1
position: 2097004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2097184:-1
position: 2097184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2096598-2096708:-1:exon

position:2096598:-1
position: 2096598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2096708:-1
position: 2096708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2095715-2095840:-1:exon

position:2095715:-1
position: 2095715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2095840:-1
position: 2095840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2095017-2095070:-1:exon

position:2095017:-1
position: 2095017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2095070:-1
position: 2095070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2094799-2094867:-1:exon

position:2094799:-1
position: 2094799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2094867:-1
position: 2094867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2094467-2094591:-1:exon

position:2094467:-1
position: 2094467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2094591:-1
position: 2094591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2091574-2093938:-1:exon

position:2093938:-1
position: 2093938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KIF3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: KIF3A
product: kinesin family member 3A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 3 long SRA reads, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 85 samples with support for all annotated introns
transcript id: XM_002188846.6
SIO_010081: KIF3A
subclass of: SO_0000673
so part of: KIF3A
location: complement(join(2091574..2093938,2094467..2094591,2094799..2094867,2095017..2095070,2095715..2095840,2096598..2096708,2097004..2097184,2097990..2098146,2099754..2099762,2103249..2103338,2104327..2104501,2104885..2105082,2105750..2105889,2106650..2106755,2107223..2107307,2107570..2107714,2108359..2108641,2109925..2110027))
location: region:2091574-2110027:-1
so has part: feature:2109925-2110027:-1:exon
so has part: feature:2108359-2108641:-1:exon
so has part: feature:2107570-2107714:-1:exon
so has part: feature:2107223-2107307:-1:exon
so has part: feature:2106650-2106755:-1:exon
so has part: feature:2105750-2105889:-1:exon
so has part: feature:2104885-2105082:-1:exon
so has part: feature:2104327-2104501:-1:exon
so has part: feature:2103249-2103338:-1:exon
so has part: feature:2099754-2099762:-1:exon
so has part: feature:2097990-2098146:-1:exon
so has part: feature:2097004-2097184:-1:exon
so has part: feature:2096598-2096708:-1:exon
so has part: feature:2095715-2095840:-1:exon
so has part: feature:2095017-2095070:-1:exon
so has part: feature:2094799-2094867:-1:exon
so has part: feature:2094467-2094591:-1:exon
so has part: feature:2091574-2093938:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2109925-2110027:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2108359-2108641:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2107570-2107714:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2107223-2107307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2106650-2106755:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2105750-2105889:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2104885-2105082:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2104327-2104501:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2103249-2103338:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2099754-2099762:-1:exon

position:2099754:-1
position: 2099754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2099762:-1
position: 2099762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2097990-2098146:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2097004-2097184:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2096598-2096708:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2095715-2095840:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2095017-2095070:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2094799-2094867:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2094467-2094591:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2091574-2093938:-1:exon

KIF3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: KIF3A
product: kinesin family member 3A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, 3 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns
transcript id: XM_012575948.4
SIO_010081: KIF3A
subclass of: SO_0000673
so part of: KIF3A
location: complement(join(2091574..2093938,2094467..2094591,2094799..2094867,2095017..2095070,2095715..2095840,2096598..2096708,2097004..2097184,2097990..2098146,2099754..2099762,2101591..2101662,2103249..2103338,2104327..2104501,2104885..2105082,2105750..2105889,2106650..2106755,2107223..2107307,2107570..2107714,2108359..2108641,2109925..2110027))
location: region:2091574-2110027:-1
so has part: feature:2109925-2110027:-1:exon
so has part: feature:2108359-2108641:-1:exon
so has part: feature:2107570-2107714:-1:exon
so has part: feature:2107223-2107307:-1:exon
so has part: feature:2106650-2106755:-1:exon
so has part: feature:2105750-2105889:-1:exon
so has part: feature:2104885-2105082:-1:exon
so has part: feature:2104327-2104501:-1:exon
so has part: feature:2103249-2103338:-1:exon
so has part: feature:2101591-2101662:-1:exon
so has part: feature:2099754-2099762:-1:exon
so has part: feature:2097990-2098146:-1:exon
so has part: feature:2097004-2097184:-1:exon
so has part: feature:2096598-2096708:-1:exon
so has part: feature:2095715-2095840:-1:exon
so has part: feature:2095017-2095070:-1:exon
so has part: feature:2094799-2094867:-1:exon
so has part: feature:2094467-2094591:-1:exon
so has part: feature:2091574-2093938:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2109925-2110027:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2108359-2108641:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2107570-2107714:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2107223-2107307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2106650-2106755:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2105750-2105889:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2104885-2105082:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2104327-2104501:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2103249-2103338:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2101591-2101662:-1:exon

position:2101591:-1
position: 2101591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2101662:-1
position: 2101662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2099754-2099762:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2097990-2098146:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2097004-2097184:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2096598-2096708:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2095715-2095840:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2095017-2095070:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2094799-2094867:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2094467-2094591:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2091574-2093938:-1:exon

KIF3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: KIF3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kinesin-like protein KIF3A isoform X3
translation: MPINKPEKPDKPESCDNVKVVVRCRPLNDREKATGYKMAVNVDEMRGTITVHKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSERQTKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDAMLRQFQKEIEELKKKLEEGEEISGSETSDSEEEDEDGEIGEEKRKKRRGKKKVSPDKMVEMQAKIEEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQLRKELEEKEQERLDIEEKYTNLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQILIIDNFIPQDYQEMIENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVLDKKEKDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGRSRPKTGRRKRSAKPGAVIDSLLQ
SIO_010081: KIF3A
subclass of: SO_0000673
so part of: KIF3A
location: complement(join(2093890..2093938,2094467..2094591,2094799..2094867,2095017..2095070,2095715..2095840,2096598..2096708,2097004..2097184,2097990..2098146,2103249..2103338,2104327..2104501,2104885..2105082,2105750..2105889,2106650..2106755,2107223..2107307,2107570..2107714,2108359..2108641,2109925..2109930))
location: region:2093890-2109930:-1
so has part: feature:2109925-2109930:-1:exon
so has part: feature:2108359-2108641:-1:exon
so has part: feature:2107570-2107714:-1:exon
so has part: feature:2107223-2107307:-1:exon
so has part: feature:2106650-2106755:-1:exon
so has part: feature:2105750-2105889:-1:exon
so has part: feature:2104885-2105082:-1:exon
so has part: feature:2104327-2104501:-1:exon
so has part: feature:2103249-2103338:-1:exon
so has part: feature:2097990-2098146:-1:exon
so has part: feature:2097004-2097184:-1:exon
so has part: feature:2096598-2096708:-1:exon
so has part: feature:2095715-2095840:-1:exon
so has part: feature:2095017-2095070:-1:exon
so has part: feature:2094799-2094867:-1:exon
so has part: feature:2094467-2094591:-1:exon
so has part: feature:2093890-2093938:-1:exon

XP_030140201.1
type: Protein
SIO_000068: ncbiprotein

position:2093890:-1
position: 2093890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2109930:-1
position: 2109930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2109925-2109930:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2108359-2108641:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2107570-2107714:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2107223-2107307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2106650-2106755:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2105750-2105889:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2104885-2105082:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2104327-2104501:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2103249-2103338:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2097990-2098146:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2097004-2097184:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2096598-2096708:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2095715-2095840:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2095017-2095070:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2094799-2094867:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2094467-2094591:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2093890-2093938:-1:exon

KIF3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: KIF3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kinesin-like protein KIF3A isoform X2
translation: MPINKPEKPDKPESCDNVKVVVRCRPLNDREKATGYKMAVNVDEMRGTITVHKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSERQTKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDAMLRQFQKEIEELKKKLEEGEEISGSETSDSEEEDEDGEIGEEKRKKRRDQAGKKKVSPDKMVEMQAKIEEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQLRKELEEKEQERLDIEEKYTNLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQILIIDNFIPQDYQEMIENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVLDKKEKDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGRSRPKTGRRKRSAKPGAVIDSLLQ
SIO_010081: KIF3A
subclass of: SO_0000673
so part of: KIF3A
location: complement(join(2093890..2093938,2094467..2094591,2094799..2094867,2095017..2095070,2095715..2095840,2096598..2096708,2097004..2097184,2097990..2098146,2099754..2099762,2103249..2103338,2104327..2104501,2104885..2105082,2105750..2105889,2106650..2106755,2107223..2107307,2107570..2107714,2108359..2108641,2109925..2109930))
location: region:2093890-2109930:-1
so has part: feature:2109925-2109930:-1:exon
so has part: feature:2108359-2108641:-1:exon
so has part: feature:2107570-2107714:-1:exon
so has part: feature:2107223-2107307:-1:exon
so has part: feature:2106650-2106755:-1:exon
so has part: feature:2105750-2105889:-1:exon
so has part: feature:2104885-2105082:-1:exon
so has part: feature:2104327-2104501:-1:exon
so has part: feature:2103249-2103338:-1:exon
so has part: feature:2099754-2099762:-1:exon
so has part: feature:2097990-2098146:-1:exon
so has part: feature:2097004-2097184:-1:exon
so has part: feature:2096598-2096708:-1:exon
so has part: feature:2095715-2095840:-1:exon
so has part: feature:2095017-2095070:-1:exon
so has part: feature:2094799-2094867:-1:exon
so has part: feature:2094467-2094591:-1:exon
so has part: feature:2093890-2093938:-1:exon

XP_002188882.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2109925-2109930:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2108359-2108641:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2107570-2107714:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2107223-2107307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2106650-2106755:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2105750-2105889:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2104885-2105082:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2104327-2104501:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2103249-2103338:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2099754-2099762:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2097990-2098146:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2097004-2097184:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2096598-2096708:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2095715-2095840:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2095017-2095070:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2094799-2094867:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2094467-2094591:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2093890-2093938:-1:exon

KIF3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: KIF3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kinesin-like protein KIF3A isoform X1
translation: MPINKPEKPDKPESCDNVKVVVRCRPLNDREKATGYKMAVNVDEMRGTITVHKTDSSNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSERQTKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDAMLRQFQKEIEELKKKLEEGEEISGSETSDSEEEDEDGEIGEEKRKKRRGSSSSSSSDSTCSVIEKPLDKSFTNQAGKKKVSPDKMVEMQAKIEEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQLRKELEEKEQERLDIEEKYTNLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQILIIDNFIPQDYQEMIENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVLDKKEKDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGRSRPKTGRRKRSAKPGAVIDSLLQ
SIO_010081: KIF3A
subclass of: SO_0000673
so part of: KIF3A
location: complement(join(2093890..2093938,2094467..2094591,2094799..2094867,2095017..2095070,2095715..2095840,2096598..2096708,2097004..2097184,2097990..2098146,2099754..2099762,2101591..2101662,2103249..2103338,2104327..2104501,2104885..2105082,2105750..2105889,2106650..2106755,2107223..2107307,2107570..2107714,2108359..2108641,2109925..2109930))
location: region:2093890-2109930:-1
so has part: feature:2109925-2109930:-1:exon
so has part: feature:2108359-2108641:-1:exon
so has part: feature:2107570-2107714:-1:exon
so has part: feature:2107223-2107307:-1:exon
so has part: feature:2106650-2106755:-1:exon
so has part: feature:2105750-2105889:-1:exon
so has part: feature:2104885-2105082:-1:exon
so has part: feature:2104327-2104501:-1:exon
so has part: feature:2103249-2103338:-1:exon
so has part: feature:2101591-2101662:-1:exon
so has part: feature:2099754-2099762:-1:exon
so has part: feature:2097990-2098146:-1:exon
so has part: feature:2097004-2097184:-1:exon
so has part: feature:2096598-2096708:-1:exon
so has part: feature:2095715-2095840:-1:exon
so has part: feature:2095017-2095070:-1:exon
so has part: feature:2094799-2094867:-1:exon
so has part: feature:2094467-2094591:-1:exon
so has part: feature:2093890-2093938:-1:exon

XP_012431402.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2109925-2109930:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2108359-2108641:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2107570-2107714:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2107223-2107307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2106650-2106755:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2105750-2105889:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2104885-2105082:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2104327-2104501:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2103249-2103338:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2101591-2101662:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2099754-2099762:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2097990-2098146:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2097004-2097184:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2096598-2096708:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2095715-2095840:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2095017-2095070:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2094799-2094867:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2094467-2094591:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2093890-2093938:-1:exon

LOC105759573
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC105759573
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2109929..2119175
location: region:2109929-2119175:1
so has part: feature:2109929-2119175:1:exon
subclass of: SO_0000010

105759573
type: Gene
SIO_000068: ncbigene

position:2109929:1
position: 2109929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2119175:1
position: 2119175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2109929-2119175:1:exon

LOC105759573
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC105759573
product: cyclin-I-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041718988.1
SIO_010081: LOC105759573
subclass of: SO_0000673
so part of: LOC105759573
location: join(2109929..2110224,2112684..2112889,2114131..2114315,2115241..2115312,2116421..2116561,2117592..2117822,2118648..2119175)
location: region:2109929-2119175:1
so has part: feature:2109929-2110224:1:exon
so has part: feature:2112684-2112889:1:exon
so has part: feature:2114131-2114315:1:exon
so has part: feature:2115241-2115312:1:exon
so has part: feature:2116421-2116561:1:exon
so has part: feature:2117592-2117822:1:exon
so has part: feature:2118648-2119175:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2109929-2110224:1:exon

position:2110224:1
position: 2110224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2112684-2112889:1:exon

position:2112684:1
position: 2112684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2112889:1
position: 2112889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2114131-2114315:1:exon

position:2114131:1
position: 2114131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2114315:1
position: 2114315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2115241-2115312:1:exon

position:2115241:1
position: 2115241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2115312:1
position: 2115312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2116421-2116561:1:exon

position:2116421:1
position: 2116421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2116561:1
position: 2116561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2117592-2117822:1:exon

position:2117592:1
position: 2117592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2117822:1
position: 2117822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2118648-2119175:1:exon

position:2118648:1
position: 2118648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105759573
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC105759573
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:2114262..2114264,aa:OTHER)
transl except: (pos:2118672..2118674,aa:OTHER)
product: LOW QUALITY PROTEIN: cyclin-I-like
translation: MATAMAAAAARARRRHRGTMTAPRLRRPAPRPARGQRRAGGGAWGAQPMAAERPRRRGPHRHGNGGGAGRAGHGPGTAGTARGGGSEGLTGLRAGPDGLQDRPTRAETALSWAVPERPRVSQPSRAPDIGHRSSCRGPRRYRPRSPPSGPVEPAPSPVPRARYRGEADHQSTNCIFLLTFPSPQGTDISLPGYKKAVLWIAEISSQFQLYPXTFALATSIFNRLLASVKAQLKYLQCIPISCLVLAAKTNEDEVIPSVQTLAVQSRCKHSPAEILRMERIILDKLQWDLYTETPMDFLNIFHAKVMSSWPHLPPRLPQRNPSLHVALLTKQLQHCMACHQLVQFKGSTLVLVIITLELERQTPGWFVVITDLLKKAQVNSTEFIHXKELVDLKLMCLQPPNPVHIFYPISQAVLGHPKARLPCHLPSEQKSSQQGRLRVAESQPVSLTTPFTPATAQIPDQTAETEECWDGFRHLHSEEGEGSAGRMNTGGSCPQLSCPCPPLQPPEQD
SIO_010081: LOC105759573
subclass of: SO_0000673
so part of: LOC105759573
location: join(2109929..2110224,2112684..2112889,2114131..2114315,2115241..2115312,2116421..2116561,2117592..2117822,2118648..2119046)
location: region:2109929-2119046:1
so has part: feature:2109929-2110224:1:exon
so has part: feature:2112684-2112889:1:exon
so has part: feature:2114131-2114315:1:exon
so has part: feature:2115241-2115312:1:exon
so has part: feature:2116421-2116561:1:exon
so has part: feature:2117592-2117822:1:exon
so has part: feature:2118648-2119046:1:exon

XP_041574922.1
type: Protein
SIO_000068: ncbiprotein

position:2119046:1
position: 2119046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2109929-2110224:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2112684-2112889:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2114131-2114315:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2115241-2115312:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2116421-2116561:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2117592-2117822:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2118648-2119046:1:exon

SEPTIN8
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SEPTIN8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2123682..2158497)
location: region:2123682-2158497:-1
so has part: feature:2123682-2158497:-1:exon
subclass of: SO_0000010

100222930
type: Gene
SIO_000068: ncbigene

position:2123682:-1
position: 2123682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2158497:-1
position: 2158497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2123682-2158497:-1:exon

SEPTIN8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SEPTIN8
product: septin 8, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 6 ESTs, 69 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 113 samples with support for all annotated introns
transcript id: XM_012575826.4
SIO_010081: SEPTIN8
subclass of: SO_0000673
so part of: SEPTIN8
location: complement(join(2123682..2124739,2130952..2131142,2131831..2131963,2132215..2132383,2132703..2132799,2134212..2134373,2139578..2139764,2140426..2140621,2141896..2142010,2158329..2158497))
location: region:2123682-2158497:-1
so has part: feature:2158329-2158497:-1:exon
so has part: feature:2141896-2142010:-1:exon
so has part: feature:2140426-2140621:-1:exon
so has part: feature:2139578-2139764:-1:exon
so has part: feature:2134212-2134373:-1:exon
so has part: feature:2132703-2132799:-1:exon
so has part: feature:2132215-2132383:-1:exon
so has part: feature:2131831-2131963:-1:exon
so has part: feature:2130952-2131142:-1:exon
so has part: feature:2123682-2124739:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2158329-2158497:-1:exon

position:2158329:-1
position: 2158329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2141896-2142010:-1:exon

position:2141896:-1
position: 2141896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2142010:-1
position: 2142010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2140426-2140621:-1:exon

position:2140426:-1
position: 2140426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2140621:-1
position: 2140621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2139578-2139764:-1:exon

position:2139578:-1
position: 2139578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2139764:-1
position: 2139764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2134212-2134373:-1:exon

position:2134212:-1
position: 2134212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2134373:-1
position: 2134373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2132703-2132799:-1:exon

position:2132703:-1
position: 2132703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2132799:-1
position: 2132799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2132215-2132383:-1:exon

position:2132215:-1
position: 2132215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2132383:-1
position: 2132383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2131831-2131963:-1:exon

position:2131831:-1
position: 2131831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2131963:-1
position: 2131963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2130952-2131142:-1:exon

position:2130952:-1
position: 2130952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2131142:-1
position: 2131142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2123682-2124739:-1:exon

position:2124739:-1
position: 2124739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SEPTIN8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SEPTIN8
product: septin 8, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs, 1 long SRA read, 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 115 samples with support for all annotated introns
transcript id: XM_030284122.3
SIO_010081: SEPTIN8
subclass of: SO_0000673
so part of: SEPTIN8
location: complement(join(2123682..2124739,2130952..2131142,2131831..2131963,2132215..2132383,2132703..2132799,2134212..2134373,2139578..2139758,2140426..2140621,2141896..2142010,2158329..2158480))
location: region:2123682-2158480:-1
so has part: feature:2158329-2158480:-1:exon
so has part: feature:2141896-2142010:-1:exon
so has part: feature:2140426-2140621:-1:exon
so has part: feature:2139578-2139758:-1:exon
so has part: feature:2134212-2134373:-1:exon
so has part: feature:2132703-2132799:-1:exon
so has part: feature:2132215-2132383:-1:exon
so has part: feature:2131831-2131963:-1:exon
so has part: feature:2130952-2131142:-1:exon
so has part: feature:2123682-2124739:-1:exon

position:2158480:-1
position: 2158480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2158329-2158480:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2141896-2142010:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2140426-2140621:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2139578-2139758:-1:exon

position:2139758:-1
position: 2139758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2134212-2134373:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2132703-2132799:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2132215-2132383:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2131831-2131963:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2130952-2131142:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2123682-2124739:-1:exon

SEPTIN8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SEPTIN8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: septin-8 isoform X2
translation: MAATDLERFSNEEKRNLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASHYESAVRLRPRTYDLQESNVHLKLTIVDAVGFGDQINKDERPIVEYIDTQFENYLQEELKIRRSLFNYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSELHKFKIKIMSELVSNGVQIYQFPTDDEAVAEINSVMNAHLPFAVVGSTEEVKVGNKLVRARQYPWGVVQVENESHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDNQPFSLQETYETKRKEFLGELQRKEEEMRQMFVNKVKETEAELKEKERELHEKFEHLKRIHQEEKRKVEEKRKELEEEMNAFNRRKVAVETLQSQSLQATSQQPLKKDKDKKNFFSLPSAYSITTGRYVN
SIO_010081: SEPTIN8
subclass of: SO_0000673
so part of: SEPTIN8
location: complement(join(2124685..2124739,2130952..2131142,2131831..2131963,2132215..2132383,2132703..2132799,2134212..2134373,2139578..2139758,2140426..2140621,2141896..2142010,2158329..2158358))
location: region:2124685-2158358:-1
so has part: feature:2158329-2158358:-1:exon
so has part: feature:2141896-2142010:-1:exon
so has part: feature:2140426-2140621:-1:exon
so has part: feature:2139578-2139758:-1:exon
so has part: feature:2134212-2134373:-1:exon
so has part: feature:2132703-2132799:-1:exon
so has part: feature:2132215-2132383:-1:exon
so has part: feature:2131831-2131963:-1:exon
so has part: feature:2130952-2131142:-1:exon
so has part: feature:2124685-2124739:-1:exon

XP_030139982.1
type: Protein
SIO_000068: ncbiprotein

position:2124685:-1
position: 2124685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2158358:-1
position: 2158358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2158329-2158358:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2141896-2142010:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2140426-2140621:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2139578-2139758:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2134212-2134373:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2132703-2132799:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2132215-2132383:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2131831-2131963:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2130952-2131142:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2124685-2124739:-1:exon

SEPTIN8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SEPTIN8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: septin-8 isoform X1
translation: MAATDLERFSNEEKRNLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASHYESAVRLRPRTYDLQESNVHLKLTIVDAVGFGDQINKDESYRPIVEYIDTQFENYLQEELKIRRSLFNYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSELHKFKIKIMSELVSNGVQIYQFPTDDEAVAEINSVMNAHLPFAVVGSTEEVKVGNKLVRARQYPWGVVQVENESHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDNQPFSLQETYETKRKEFLGELQRKEEEMRQMFVNKVKETEAELKEKERELHEKFEHLKRIHQEEKRKVEEKRKELEEEMNAFNRRKVAVETLQSQSLQATSQQPLKKDKDKKNFFSLPSAYSITTGRYVN
SIO_010081: SEPTIN8
subclass of: SO_0000673
so part of: SEPTIN8
location: complement(join(2124685..2124739,2130952..2131142,2131831..2131963,2132215..2132383,2132703..2132799,2134212..2134373,2139578..2139764,2140426..2140621,2141896..2142010,2158329..2158358))
location: region:2124685-2158358:-1
so has part: feature:2158329-2158358:-1:exon
so has part: feature:2141896-2142010:-1:exon
so has part: feature:2140426-2140621:-1:exon
so has part: feature:2139578-2139764:-1:exon
so has part: feature:2134212-2134373:-1:exon
so has part: feature:2132703-2132799:-1:exon
so has part: feature:2132215-2132383:-1:exon
so has part: feature:2131831-2131963:-1:exon
so has part: feature:2130952-2131142:-1:exon
so has part: feature:2124685-2124739:-1:exon

XP_012431280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2158329-2158358:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2141896-2142010:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2140426-2140621:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2139578-2139764:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2134212-2134373:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2132703-2132799:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2132215-2132383:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2131831-2131963:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2130952-2131142:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2124685-2124739:-1:exon

SEPTIN8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SEPTIN8
product: septin 8, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 2 long SRA reads, 67 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 111 samples with support for all annotated introns
transcript id: XM_012575830.4
SIO_010081: SEPTIN8
subclass of: SO_0000673
so part of: SEPTIN8
location: complement(join(2126289..2129116,2130952..2131142,2131831..2131963,2132215..2132383,2132703..2132799,2134212..2134373,2139578..2139764,2140426..2140621,2141896..2142010,2158329..2158497))
location: region:2126289-2158497:-1
so has part: feature:2158329-2158497:-1:exon
so has part: feature:2141896-2142010:-1:exon
so has part: feature:2140426-2140621:-1:exon
so has part: feature:2139578-2139764:-1:exon
so has part: feature:2134212-2134373:-1:exon
so has part: feature:2132703-2132799:-1:exon
so has part: feature:2132215-2132383:-1:exon
so has part: feature:2131831-2131963:-1:exon
so has part: feature:2130952-2131142:-1:exon
so has part: feature:2126289-2129116:-1:exon

position:2126289:-1
position: 2126289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2158329-2158497:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2141896-2142010:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2140426-2140621:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2139578-2139764:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2134212-2134373:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2132703-2132799:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2132215-2132383:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2131831-2131963:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2130952-2131142:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2126289-2129116:-1:exon

position:2129116:-1
position: 2129116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SEPTIN8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SEPTIN8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: septin-8 isoform X3
translation: MAATDLERFSNEEKRNLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFETEEASHYESAVRLRPRTYDLQESNVHLKLTIVDAVGFGDQINKDESYRPIVEYIDTQFENYLQEELKIRRSLFNYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSELHKFKIKIMSELVSNGVQIYQFPTDDEAVAEINSVMNAHLPFAVVGSTEEVKVGNKLVRARQYPWGVVQVENESHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDNQPFSLQETYETKRKEFLGELQRKEEEMRQMFVNKVKETEAELKEKERELHEKFEHLKRIHQEEKRKVEEKRKELEEEMNAFNRRKVAVETLQSQSLQATSQQPLKKDKDKKN
SIO_010081: SEPTIN8
subclass of: SO_0000673
so part of: SEPTIN8
location: complement(join(2129113..2129116,2130952..2131142,2131831..2131963,2132215..2132383,2132703..2132799,2134212..2134373,2139578..2139764,2140426..2140621,2141896..2142010,2158329..2158358))
location: region:2129113-2158358:-1
so has part: feature:2158329-2158358:-1:exon
so has part: feature:2141896-2142010:-1:exon
so has part: feature:2140426-2140621:-1:exon
so has part: feature:2139578-2139764:-1:exon
so has part: feature:2134212-2134373:-1:exon
so has part: feature:2132703-2132799:-1:exon
so has part: feature:2132215-2132383:-1:exon
so has part: feature:2131831-2131963:-1:exon
so has part: feature:2130952-2131142:-1:exon
so has part: feature:2129113-2129116:-1:exon

XP_012431284.1
type: Protein
SIO_000068: ncbiprotein

position:2129113:-1
position: 2129113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2158329-2158358:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2141896-2142010:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2140426-2140621:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2139578-2139764:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2134212-2134373:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2132703-2132799:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2132215-2132383:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2131831-2131963:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2130952-2131142:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2129113-2129116:-1:exon

LOC115497128
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497128
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2167612..2168995)
location: region:2167612-2168995:-1
so has part: feature:2167612-2168995:-1:exon
subclass of: SO_0000011

115497128
type: Gene
SIO_000068: ncbigene

position:2167612:-1
position: 2167612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2168995:-1
position: 2168995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2167612-2168995:-1:exon

LOC115497128
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497128
product: uncharacterized LOC115497128
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XR_005981796.1
SIO_010081: LOC115497128
subclass of: SO_0000673
so part of: LOC115497128
location: complement(join(2167612..2167987,2168562..2168995))
location: region:2167612-2168995:-1
so has part: feature:2168562-2168995:-1:exon
so has part: feature:2167612-2167987:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2168562-2168995:-1:exon

position:2168562:-1
position: 2168562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2167612-2167987:-1:exon

position:2167987:-1
position: 2167987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SOWAHA
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SOWAHA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2169232..2174920
location: region:2169232-2174920:1
so has part: feature:2169232-2174920:1:exon
subclass of: SO_0000010

115497154
type: Gene
SIO_000068: ncbigene

position:2169232:1
position: 2169232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2174920:1
position: 2174920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2169232-2174920:1:exon

SOWAHA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SOWAHA
product: sosondowah ankyrin repeat domain family member A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030284289.3
SIO_010081: SOWAHA
subclass of: SO_0000673
so part of: SOWAHA
location: 2169232..2174920
location: region:2169232-2174920:1
so has part: feature:2169232-2174920:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2169232-2174920:1:exon

SOWAHA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SOWAHA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat domain-containing protein SOWAHA
translation: MAELDISAEAVLGFLRERGGRVRNAELVSAFRPLLEAAGAGADAGQAEGRAARRERFKAAVNAVATVKEIDGVKFVVLKRQLRAAPPAGGDAGGPVPAPVPDPAPVPAPDPAGTPPEEPPGPRAVAELRGLFQGGGGGVPLPGAAAGARREPPPKPCMLPVRCVPAPAAPAPPEQAAGPLSPPPPDEEPGSRSPGLRRGPKNHRASEETVVPLEQAEHQWLVLAADGQWTQQLHGLLLGDASLAARRDFISGFTALHWAAKSGNCDMVTNIIRAAEKGGSRVNVDARSHGGYTALHLAAIHGQEKIITMLVYSYHAKTDLRDYSGKKPHQYLKEGTSLTIRRLLGDPSLSQNMEHSVPIKKSTKLAASILSSTSTFLGVISDDMAFYDLTKGLRKPSTLNKLLTASTGPRRKPKIRGGFPSYSSLSEVAEEEEEVVVKRRPVSELFFGH
SIO_010081: SOWAHA
subclass of: SO_0000673
so part of: SOWAHA
location: 2169408..2170757
location: region:2169408-2170757:1
so has part: feature:2169408-2170757:1:exon

XP_030140149.3
type: Protein
SIO_000068: ncbiprotein

position:2169408:1
position: 2169408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2170757:1
position: 2170757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2169408-2170757:1:exon

LOC100226810
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC100226810
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2176334..2197569)
location: region:2176334-2197569:-1
so has part: feature:2176334-2197569:-1:exon
subclass of: SO_0000010

100226810
type: Gene
SIO_000068: ncbigene

position:2176334:-1
position: 2176334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2197569:-1
position: 2197569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2176334-2197569:-1:exon

LOC100226810
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100226810
product: protein Shroom1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_012575390.4
SIO_010081: LOC100226810
subclass of: SO_0000673
so part of: LOC100226810
location: complement(join(2176334..2179940,2182098..2182370,2183503..2183653,2184041..2184619,2185315..2185385,2186088..2188853,2197300..2197567))
location: region:2176334-2197567:-1
so has part: feature:2197300-2197567:-1:exon
so has part: feature:2186088-2188853:-1:exon
so has part: feature:2185315-2185385:-1:exon
so has part: feature:2184041-2184619:-1:exon
so has part: feature:2183503-2183653:-1:exon
so has part: feature:2182098-2182370:-1:exon
so has part: feature:2176334-2179940:-1:exon

position:2197567:-1
position: 2197567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2197300-2197567:-1:exon

position:2197300:-1
position: 2197300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2186088-2188853:-1:exon

position:2186088:-1
position: 2186088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2188853:-1
position: 2188853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2185315-2185385:-1:exon

position:2185315:-1
position: 2185315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2185385:-1
position: 2185385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2184041-2184619:-1:exon

position:2184041:-1
position: 2184041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2184619:-1
position: 2184619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2183503-2183653:-1:exon

position:2183503:-1
position: 2183503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2183653:-1
position: 2183653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2182098-2182370:-1:exon

position:2182098:-1
position: 2182098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2182370:-1
position: 2182370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2176334-2179940:-1:exon

position:2179940:-1
position: 2179940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100226810
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100226810
product: protein Shroom1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
transcript id: XM_041718898.1
SIO_010081: LOC100226810
subclass of: SO_0000673
so part of: LOC100226810
location: complement(join(2176334..2179940,2182098..2182370,2183503..2184021))
location: region:2176334-2184021:-1
so has part: feature:2183503-2184021:-1:exon
so has part: feature:2182098-2182370:-1:exon
so has part: feature:2176334-2179940:-1:exon

position:2184021:-1
position: 2184021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2183503-2184021:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2182098-2182370:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2176334-2179940:-1:exon

LOC100226810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100226810
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Shroom1 isoform X1
translation: MTSAGNEIERWTHRQGGRTGKLLEPVASPENDHLLSVKSISSTDLPGRADSAYSSFSGGSNVPEYPTPSCHGESSCVPPEQGPYMDSEYVTGIYHLSAAHSALRPPQPNTAPGLSTHNSSQSCCGGSAPSQRTPNQGPPALAAPAVSRSCAISPGHRDRRRDSRGSAGHAGGTVPPAPGLQHGQPAGRQAARSQHWDAATQKDVGPHREKPLQNKGLSSDLTNEVSKAQVLKTEENGECSLSQQPTKRSNPHIFRRPSSFIFQEYLKTDSVMNGPKILSAYNSGHVNKIPKEMNFKCYQQAHSNPNAVNDTQEVKQCPRGVRKPSAREAALPSTVPGPSQRKESLPCAQGPLHAEWHSDMDQDVFEDSLELKYMENALLNKNAPRKLNSYADKNQCYDSEGKIMSNIRELVPNQQSKVQRSPLSSSCKAMEVEHPQYEESDQGRRQCCDGTSQMAFFRPKEDSTSQSLREVQKENQGNNSSPDLSTCLEQEEPPAQKHQPVFQTQLSRQLWEEQAGEQITRQATPMLYYLSAGKTTSVLHPNKDSRSSPKEIPSSSYAASVQCLDKQGEGHQLQRSSHHHQRSADDLQLQNKDLIWRSPASFTEETFQNDYIEKLKVAQKKVLKETSFKRKDLQMSLPVRLRQKSSKRPSVEHLRSFSLSSASEDAKPVPCSPSHLESLESFNRNEDIRRPQKGQAGGRKRATQEQKKLCYSEPEKLNHLMDKEVTWSQDRDETTEQGTVASRGRDLENRGKAFSRTELKQIQHSALIKYMERKISQRPGGSQHLPLHKPPLQKRLSNPKGPPGQISNPNGSRKMQNDEVFCQLLSEQKSPDVFPPLPLAPPLNGTSRCDPSQGDGSCTSKCPSAESLPQAGGSASGRAPERPKSTQDPCRCARCAAAPCGRCGSCPGASSFHDPEKDGPKNHEHSDISGHVCGQDKKEQTPETSIPVPGSGSKGSDGVEEECRTHSVSGNAALKHPEQQQPAASPGQGMLLHTAPAQPHQGHKHPAKGLLAQETSMHSSHDDVPLERETHLPQRRLQSPQEQRCQELAMEIIAMDSSLVDILMPHPLRKTALDLMEGLFPVHISMLDKSRRKRGKAQHVQENDTKSHGDGPEEYPKSEHETKQRSKDPASMRNQVLKRNRDSTNELDDITSKKLELMASLQSRLQALWEEQELVLLEVRECAKWGKELEVLVRELCKPNEFERYLMFIGDLEKVLSLLLCLSSRLARVQNAMSRMDGNTEPEEKQSLNERHKLLSRQREDAKDLKENLDRRERVVSGILAKYLTEQQLQDYQHFVQVKTSLLIEQKDLEEQIRFFEEQLENLEQSIPI
SIO_010081: LOC100226810
subclass of: SO_0000673
so part of: LOC100226810
location: complement(join(2179686..2179940,2182098..2182370,2183503..2183653,2184041..2184619,2185315..2185385,2186088..2188748))
location: region:2179686-2188748:-1
so has part: feature:2186088-2188748:-1:exon
so has part: feature:2185315-2185385:-1:exon
so has part: feature:2184041-2184619:-1:exon
so has part: feature:2183503-2183653:-1:exon
so has part: feature:2182098-2182370:-1:exon
so has part: feature:2179686-2179940:-1:exon

XP_012430844.4
type: Protein
SIO_000068: ncbiprotein

position:2179686:-1
position: 2179686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2188748:-1
position: 2188748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2186088-2188748:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2185315-2185385:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2184041-2184619:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2183503-2183653:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2182098-2182370:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2179686-2179940:-1:exon

LOC100226810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100226810
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Shroom1 isoform X3
translation: MDKTMNSVLVKKTVECLLWVFIFFFNSTKSHGDGPEEYPKSEHETKQRSKDPASMRNQVLKRNRDSTNELDDITSKKLELMASLQSRLQALWEEQELVLLEVRECAKWGKELEVLVRELCKPNEFERYLMFIGDLEKVLSLLLCLSSRLARVQNAMSRMDGNTEPEEKQSLNERHKLLSRQREDAKDLKENLDRRERVVSGILAKYLTEQQLQDYQHFVQVKTSLLIEQKDLEEQIRFFEEQLENLEQSIPI
SIO_010081: LOC100226810
subclass of: SO_0000673
so part of: LOC100226810
location: complement(join(2179686..2179940,2182098..2182370,2183503..2183733))
location: region:2179686-2183733:-1
so has part: feature:2183503-2183733:-1:exon
so has part: feature:2182098-2182370:-1:exon
so has part: feature:2179686-2179940:-1:exon

XP_041574832.1
type: Protein
SIO_000068: ncbiprotein

position:2183733:-1
position: 2183733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2183503-2183733:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2182098-2182370:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2179686-2179940:-1:exon

LOC100226810
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: LOC100226810
product: protein Shroom1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_032750813.2
SIO_010081: LOC100226810
subclass of: SO_0000673
so part of: LOC100226810
location: complement(join(2180074..2180148,2182098..2182370,2183503..2183653,2184041..2184619,2185315..2185385,2186088..2188853,2197300..2197569))
location: region:2180074-2197569:-1
so has part: feature:2197300-2197569:-1:exon
so has part: feature:2186088-2188853:-1:exon
so has part: feature:2185315-2185385:-1:exon
so has part: feature:2184041-2184619:-1:exon
so has part: feature:2183503-2183653:-1:exon
so has part: feature:2182098-2182370:-1:exon
so has part: feature:2180074-2180148:-1:exon

position:2180074:-1
position: 2180074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2197300-2197569:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2186088-2188853:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2185315-2185385:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2184041-2184619:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2183503-2183653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2182098-2182370:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2180074-2180148:-1:exon

position:2180148:-1
position: 2180148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100226810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: LOC100226810
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Shroom1 isoform X2
translation: MTSAGNEIERWTHRQGGRTGKLLEPVASPENDHLLSVKSISSTDLPGRADSAYSSFSGGSNVPEYPTPSCHGESSCVPPEQGPYMDSEYVTGIYHLSAAHSALRPPQPNTAPGLSTHNSSQSCCGGSAPSQRTPNQGPPALAAPAVSRSCAISPGHRDRRRDSRGSAGHAGGTVPPAPGLQHGQPAGRQAARSQHWDAATQKDVGPHREKPLQNKGLSSDLTNEVSKAQVLKTEENGECSLSQQPTKRSNPHIFRRPSSFIFQEYLKTDSVMNGPKILSAYNSGHVNKIPKEMNFKCYQQAHSNPNAVNDTQEVKQCPRGVRKPSAREAALPSTVPGPSQRKESLPCAQGPLHAEWHSDMDQDVFEDSLELKYMENALLNKNAPRKLNSYADKNQCYDSEGKIMSNIRELVPNQQSKVQRSPLSSSCKAMEVEHPQYEESDQGRRQCCDGTSQMAFFRPKEDSTSQSLREVQKENQGNNSSPDLSTCLEQEEPPAQKHQPVFQTQLSRQLWEEQAGEQITRQATPMLYYLSAGKTTSVLHPNKDSRSSPKEIPSSSYAASVQCLDKQGEGHQLQRSSHHHQRSADDLQLQNKDLIWRSPASFTEETFQNDYIEKLKVAQKKVLKETSFKRKDLQMSLPVRLRQKSSKRPSVEHLRSFSLSSASEDAKPVPCSPSHLESLESFNRNEDIRRPQKGQAGGRKRATQEQKKLCYSEPEKLNHLMDKEVTWSQDRDETTEQGTVASRGRDLENRGKAFSRTELKQIQHSALIKYMERKISQRPGGSQHLPLHKPPLQKRLSNPKGPPGQISNPNGSRKMQNDEVFCQLLSEQKSPDVFPPLPLAPPLNGTSRCDPSQGDGSCTSKCPSAESLPQAGGSASGRAPERPKSTQDPCRCARCAAAPCGRCGSCPGASSFHDPEKDGPKNHEHSDISGHVCGQDKKEQTPETSIPVPGSGSKGSDGVEEECRTHSVSGNAALKHPEQQQPAASPGQGMLLHTAPAQPHQGHKHPAKGLLAQETSMHSSHDDVPLERETHLPQRRLQSPQEQRCQELAMEIIAMDSSLVDILMPHPLRKTALDLMEGLFPVHISMLDKSRRKRGKAQHVQENDTKSHGDGPEEYPKSEHETKQRSKDPASMRNQVLKRNRDSTNELDDITSKKLELMASLQSRLQALWEEQELVLLEVRECAKWGKELEVLVRELCKPNEFERYLMFIGDLEKVLSLLLCLSSRLARVQNAMSRMDGNTEPEEKHRKSGP
SIO_010081: LOC100226810
subclass of: SO_0000673
so part of: LOC100226810
location: complement(join(2180128..2180148,2182098..2182370,2183503..2183653,2184041..2184619,2185315..2185385,2186088..2188748))
location: region:2180128-2188748:-1
so has part: feature:2186088-2188748:-1:exon
so has part: feature:2185315-2185385:-1:exon
so has part: feature:2184041-2184619:-1:exon
so has part: feature:2183503-2183653:-1:exon
so has part: feature:2182098-2182370:-1:exon
so has part: feature:2180128-2180148:-1:exon

XP_032606704.2
type: Protein
SIO_000068: ncbiprotein

position:2180128:-1
position: 2180128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2186088-2188748:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2185315-2185385:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2184041-2184619:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2183503-2183653:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2182098-2182370:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2180128-2180148:-1:exon

SLU7
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: SLU7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2207866..2218924)
location: region:2207866-2218924:-1
so has part: feature:2207866-2218924:-1:exon
subclass of: SO_0000010

100230538
type: Gene
SIO_000068: ncbigene

position:2207866:-1
position: 2207866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2218924:-1
position: 2218924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2207866-2218924:-1:exon

SLU7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLU7
product: SLU7 homolog, splicing factor, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs, 3 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns
transcript id: XM_030283792.3
SIO_010081: SLU7
subclass of: SO_0000673
so part of: SLU7
location: complement(join(2207866..2209024,2209528..2209632,2209858..2209932,2210116..2210220,2210645..2210806,2211575..2211714,2211915..2211982,2213281..2213378,2213659..2213790,2215693..2215758,2215904..2216068,2216618..2216698,2217293..2217446,2218053..2218229,2218829..2218924))
location: region:2207866-2218924:-1
so has part: feature:2218829-2218924:-1:exon
so has part: feature:2218053-2218229:-1:exon
so has part: feature:2217293-2217446:-1:exon
so has part: feature:2216618-2216698:-1:exon
so has part: feature:2215904-2216068:-1:exon
so has part: feature:2215693-2215758:-1:exon
so has part: feature:2213659-2213790:-1:exon
so has part: feature:2213281-2213378:-1:exon
so has part: feature:2211915-2211982:-1:exon
so has part: feature:2211575-2211714:-1:exon
so has part: feature:2210645-2210806:-1:exon
so has part: feature:2210116-2210220:-1:exon
so has part: feature:2209858-2209932:-1:exon
so has part: feature:2209528-2209632:-1:exon
so has part: feature:2207866-2209024:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2218829-2218924:-1:exon

position:2218829:-1
position: 2218829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2218053-2218229:-1:exon

position:2218053:-1
position: 2218053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2218229:-1
position: 2218229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2217293-2217446:-1:exon

position:2217293:-1
position: 2217293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2217446:-1
position: 2217446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2216618-2216698:-1:exon

position:2216618:-1
position: 2216618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2216698:-1
position: 2216698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2215904-2216068:-1:exon

position:2215904:-1
position: 2215904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2216068:-1
position: 2216068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2215693-2215758:-1:exon

position:2215693:-1
position: 2215693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2215758:-1
position: 2215758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2213659-2213790:-1:exon

position:2213659:-1
position: 2213659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2213790:-1
position: 2213790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2213281-2213378:-1:exon

position:2213281:-1
position: 2213281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2213378:-1
position: 2213378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2211915-2211982:-1:exon

position:2211915:-1
position: 2211915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2211982:-1
position: 2211982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2211575-2211714:-1:exon

position:2211575:-1
position: 2211575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2211714:-1
position: 2211714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2210645-2210806:-1:exon

position:2210645:-1
position: 2210645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2210806:-1
position: 2210806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2210116-2210220:-1:exon

position:2210116:-1
position: 2210116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2210220:-1
position: 2210220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2209858-2209932:-1:exon

position:2209858:-1
position: 2209858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2209932:-1
position: 2209932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2209528-2209632:-1:exon

position:2209528:-1
position: 2209528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2209632:-1
position: 2209632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2207866-2209024:-1:exon

position:2209024:-1
position: 2209024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SLU7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLU7
product: SLU7 homolog, splicing factor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 ESTs, 14 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
transcript id: XM_030283789.3
SIO_010081: SLU7
subclass of: SO_0000673
so part of: SLU7
location: complement(join(2207866..2209024,2209528..2209632,2209858..2209932,2210116..2210220,2210645..2210806,2211575..2211714,2211915..2211982,2213281..2213378,2213659..2213790,2214285..2214332,2215693..2215758,2215904..2216068,2216618..2216698,2217293..2217446,2218053..2218229,2218829..2218924))
location: region:2207866-2218924:-1
so has part: feature:2218829-2218924:-1:exon
so has part: feature:2218053-2218229:-1:exon
so has part: feature:2217293-2217446:-1:exon
so has part: feature:2216618-2216698:-1:exon
so has part: feature:2215904-2216068:-1:exon
so has part: feature:2215693-2215758:-1:exon
so has part: feature:2214285-2214332:-1:exon
so has part: feature:2213659-2213790:-1:exon
so has part: feature:2213281-2213378:-1:exon
so has part: feature:2211915-2211982:-1:exon
so has part: feature:2211575-2211714:-1:exon
so has part: feature:2210645-2210806:-1:exon
so has part: feature:2210116-2210220:-1:exon
so has part: feature:2209858-2209932:-1:exon
so has part: feature:2209528-2209632:-1:exon
so has part: feature:2207866-2209024:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2218829-2218924:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2218053-2218229:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2217293-2217446:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2216618-2216698:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2215904-2216068:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2215693-2215758:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2214285-2214332:-1:exon

position:2214285:-1
position: 2214285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2214332:-1
position: 2214332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2213659-2213790:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2213281-2213378:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2211915-2211982:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2211575-2211714:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2210645-2210806:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2210116-2210220:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2209858-2209932:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2209528-2209632:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2207866-2209024:-1:exon

SLU7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLU7
product: SLU7 homolog, splicing factor, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, 2 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
transcript id: XM_030283790.3
SIO_010081: SLU7
subclass of: SO_0000673
so part of: SLU7
location: complement(join(2207866..2209024,2209528..2209632,2209858..2209932,2210116..2210220,2210645..2210806,2211575..2211714,2211915..2211982,2213281..2213378,2213659..2213790,2214285..2214332,2215693..2215758,2215904..2216068,2216618..2216698,2217293..2217446,2218053..2218229,2218670..2218739))
location: region:2207866-2218739:-1
so has part: feature:2218670-2218739:-1:exon
so has part: feature:2218053-2218229:-1:exon
so has part: feature:2217293-2217446:-1:exon
so has part: feature:2216618-2216698:-1:exon
so has part: feature:2215904-2216068:-1:exon
so has part: feature:2215693-2215758:-1:exon
so has part: feature:2214285-2214332:-1:exon
so has part: feature:2213659-2213790:-1:exon
so has part: feature:2213281-2213378:-1:exon
so has part: feature:2211915-2211982:-1:exon
so has part: feature:2211575-2211714:-1:exon
so has part: feature:2210645-2210806:-1:exon
so has part: feature:2210116-2210220:-1:exon
so has part: feature:2209858-2209932:-1:exon
so has part: feature:2209528-2209632:-1:exon
so has part: feature:2207866-2209024:-1:exon

position:2218739:-1
position: 2218739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2218670-2218739:-1:exon

position:2218670:-1
position: 2218670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2218053-2218229:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2217293-2217446:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2216618-2216698:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2215904-2216068:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2215693-2215758:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2214285-2214332:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2213659-2213790:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2213281-2213378:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2211915-2211982:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2211575-2211714:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2210645-2210806:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2210116-2210220:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2209858-2209932:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2209528-2209632:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2207866-2209024:-1:exon

SLU7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: SLU7
product: SLU7 homolog, splicing factor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, 2 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 57 samples with support for all annotated introns
transcript id: XM_030283791.3
SIO_010081: SLU7
subclass of: SO_0000673
so part of: SLU7
location: complement(join(2207866..2209024,2209528..2209632,2209858..2209932,2210116..2210220,2210645..2210806,2211575..2211714,2211915..2211982,2213281..2213378,2213659..2213790,2214285..2214332,2215693..2215758,2215904..2216068,2216618..2216698,2217293..2217446,2218053..2218229,2218355..2218517))
location: region:2207866-2218517:-1
so has part: feature:2218355-2218517:-1:exon
so has part: feature:2218053-2218229:-1:exon
so has part: feature:2217293-2217446:-1:exon
so has part: feature:2216618-2216698:-1:exon
so has part: feature:2215904-2216068:-1:exon
so has part: feature:2215693-2215758:-1:exon
so has part: feature:2214285-2214332:-1:exon
so has part: feature:2213659-2213790:-1:exon
so has part: feature:2213281-2213378:-1:exon
so has part: feature:2211915-2211982:-1:exon
so has part: feature:2211575-2211714:-1:exon
so has part: feature:2210645-2210806:-1:exon
so has part: feature:2210116-2210220:-1:exon
so has part: feature:2209858-2209932:-1:exon
so has part: feature:2209528-2209632:-1:exon
so has part: feature:2207866-2209024:-1:exon

position:2218517:-1
position: 2218517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2218355-2218517:-1:exon

position:2218355:-1
position: 2218355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2218053-2218229:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2217293-2217446:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2216618-2216698:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2215904-2216068:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2215693-2215758:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2214285-2214332:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2213659-2213790:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2213281-2213378:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2211915-2211982:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2211575-2211714:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2210645-2210806:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2210116-2210220:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2209858-2209932:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2209528-2209632:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2207866-2209024:-1:exon

SLU7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLU7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor SLU7 isoform X2
translation: MASGAVTNAPPAGGATDVSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYNSSGDWYKRGVQEHAVATRYRKGACENCGALTHKKKDCMERPRKVGAKYTGMNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYSKVDLAKRTLKAQKLQEELASGKLEQVERDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANTGKNPDEVGYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKAQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQEKAIACSKYEEDVKINNHTCIWGSYWKEGKWGYKCCHSFVKYSYCTGEAGKEIANTEASLMEEQPEDEEHMTKPKTLMEIHQEKQKEKKKKKHKKSSNSDSEGEEKKKQEKLKKALNAEEARLLHIKEIMQLDERKRPYNSQYEAREPTEEEMEAYRMKRQRPDDPMASFLGQ
SIO_010081: SLU7
subclass of: SO_0000673
so part of: SLU7
location: complement(join(2208845..2209024,2209528..2209632,2209858..2209932,2210116..2210220,2210645..2210806,2211575..2211714,2211915..2211982,2213281..2213378,2213659..2213790,2215693..2215758,2215904..2216068,2216618..2216698,2217293..2217446,2218053..2218216))
location: region:2208845-2218216:-1
so has part: feature:2218053-2218216:-1:exon
so has part: feature:2217293-2217446:-1:exon
so has part: feature:2216618-2216698:-1:exon
so has part: feature:2215904-2216068:-1:exon
so has part: feature:2215693-2215758:-1:exon
so has part: feature:2213659-2213790:-1:exon
so has part: feature:2213281-2213378:-1:exon
so has part: feature:2211915-2211982:-1:exon
so has part: feature:2211575-2211714:-1:exon
so has part: feature:2210645-2210806:-1:exon
so has part: feature:2210116-2210220:-1:exon
so has part: feature:2209858-2209932:-1:exon
so has part: feature:2209528-2209632:-1:exon
so has part: feature:2208845-2209024:-1:exon

XP_030139652.1
type: Protein
SIO_000068: ncbiprotein

position:2208845:-1
position: 2208845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2218216:-1
position: 2218216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2218053-2218216:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2217293-2217446:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2216618-2216698:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2215904-2216068:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2215693-2215758:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2213659-2213790:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2213281-2213378:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2211915-2211982:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2211575-2211714:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2210645-2210806:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2210116-2210220:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2209858-2209932:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2209528-2209632:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2208845-2209024:-1:exon

SLU7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLU7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor SLU7 isoform X1
translation: MASGAVTNAPPAGGATDVSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYNSSGDWYKRGVQEHAVATRYRKGACENCGALTHKKKDCMERPRKVGAKYTGMNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYSKVDLAKRTLKAQKLQEELASGKLEQVNSPRHQWGEEESNSQTERDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANTGKNPDEVGYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKAQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQEKAIACSKYEEDVKINNHTCIWGSYWKEGKWGYKCCHSFVKYSYCTGEAGKEIANTEASLMEEQPEDEEHMTKPKTLMEIHQEKQKEKKKKKHKKSSNSDSEGEEKKKQEKLKKALNAEEARLLHIKEIMQLDERKRPYNSQYEAREPTEEEMEAYRMKRQRPDDPMASFLGQ
SIO_010081: SLU7
subclass of: SO_0000673
so part of: SLU7
location: complement(join(2208845..2209024,2209528..2209632,2209858..2209932,2210116..2210220,2210645..2210806,2211575..2211714,2211915..2211982,2213281..2213378,2213659..2213790,2214285..2214332,2215693..2215758,2215904..2216068,2216618..2216698,2217293..2217446,2218053..2218216))
location: region:2208845-2218216:-1
so has part: feature:2218053-2218216:-1:exon
so has part: feature:2217293-2217446:-1:exon
so has part: feature:2216618-2216698:-1:exon
so has part: feature:2215904-2216068:-1:exon
so has part: feature:2215693-2215758:-1:exon
so has part: feature:2214285-2214332:-1:exon
so has part: feature:2213659-2213790:-1:exon
so has part: feature:2213281-2213378:-1:exon
so has part: feature:2211915-2211982:-1:exon
so has part: feature:2211575-2211714:-1:exon
so has part: feature:2210645-2210806:-1:exon
so has part: feature:2210116-2210220:-1:exon
so has part: feature:2209858-2209932:-1:exon
so has part: feature:2209528-2209632:-1:exon
so has part: feature:2208845-2209024:-1:exon

XP_030139649.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2218053-2218216:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2217293-2217446:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2216618-2216698:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2215904-2216068:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2215693-2215758:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2214285-2214332:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2213659-2213790:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2213281-2213378:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2211915-2211982:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2211575-2211714:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2210645-2210806:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2210116-2210220:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2209858-2209932:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2209528-2209632:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2208845-2209024:-1:exon

SLU7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLU7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor SLU7 isoform X1
translation: MASGAVTNAPPAGGATDVSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYNSSGDWYKRGVQEHAVATRYRKGACENCGALTHKKKDCMERPRKVGAKYTGMNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYSKVDLAKRTLKAQKLQEELASGKLEQVNSPRHQWGEEESNSQTERDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANTGKNPDEVGYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKAQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQEKAIACSKYEEDVKINNHTCIWGSYWKEGKWGYKCCHSFVKYSYCTGEAGKEIANTEASLMEEQPEDEEHMTKPKTLMEIHQEKQKEKKKKKHKKSSNSDSEGEEKKKQEKLKKALNAEEARLLHIKEIMQLDERKRPYNSQYEAREPTEEEMEAYRMKRQRPDDPMASFLGQ
SIO_010081: SLU7
subclass of: SO_0000673
so part of: SLU7
location: complement(join(2208845..2209024,2209528..2209632,2209858..2209932,2210116..2210220,2210645..2210806,2211575..2211714,2211915..2211982,2213281..2213378,2213659..2213790,2214285..2214332,2215693..2215758,2215904..2216068,2216618..2216698,2217293..2217446,2218053..2218216))
location: region:2208845-2218216:-1
so has part: feature:2218053-2218216:-1:exon
so has part: feature:2217293-2217446:-1:exon
so has part: feature:2216618-2216698:-1:exon
so has part: feature:2215904-2216068:-1:exon
so has part: feature:2215693-2215758:-1:exon
so has part: feature:2214285-2214332:-1:exon
so has part: feature:2213659-2213790:-1:exon
so has part: feature:2213281-2213378:-1:exon
so has part: feature:2211915-2211982:-1:exon
so has part: feature:2211575-2211714:-1:exon
so has part: feature:2210645-2210806:-1:exon
so has part: feature:2210116-2210220:-1:exon
so has part: feature:2209858-2209932:-1:exon
so has part: feature:2209528-2209632:-1:exon
so has part: feature:2208845-2209024:-1:exon

XP_030139650.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2218053-2218216:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2217293-2217446:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2216618-2216698:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2215904-2216068:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2215693-2215758:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2214285-2214332:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2213659-2213790:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2213281-2213378:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2211915-2211982:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2211575-2211714:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2210645-2210806:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2210116-2210220:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2209858-2209932:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2209528-2209632:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2208845-2209024:-1:exon

SLU7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: SLU7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor SLU7 isoform X1
translation: MASGAVTNAPPAGGATDVSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYNSSGDWYKRGVQEHAVATRYRKGACENCGALTHKKKDCMERPRKVGAKYTGMNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYSKVDLAKRTLKAQKLQEELASGKLEQVNSPRHQWGEEESNSQTERDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANTGKNPDEVGYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKAQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQEKAIACSKYEEDVKINNHTCIWGSYWKEGKWGYKCCHSFVKYSYCTGEAGKEIANTEASLMEEQPEDEEHMTKPKTLMEIHQEKQKEKKKKKHKKSSNSDSEGEEKKKQEKLKKALNAEEARLLHIKEIMQLDERKRPYNSQYEAREPTEEEMEAYRMKRQRPDDPMASFLGQ
SIO_010081: SLU7
subclass of: SO_0000673
so part of: SLU7
location: complement(join(2208845..2209024,2209528..2209632,2209858..2209932,2210116..2210220,2210645..2210806,2211575..2211714,2211915..2211982,2213281..2213378,2213659..2213790,2214285..2214332,2215693..2215758,2215904..2216068,2216618..2216698,2217293..2217446,2218053..2218216))
location: region:2208845-2218216:-1
so has part: feature:2218053-2218216:-1:exon
so has part: feature:2217293-2217446:-1:exon
so has part: feature:2216618-2216698:-1:exon
so has part: feature:2215904-2216068:-1:exon
so has part: feature:2215693-2215758:-1:exon
so has part: feature:2214285-2214332:-1:exon
so has part: feature:2213659-2213790:-1:exon
so has part: feature:2213281-2213378:-1:exon
so has part: feature:2211915-2211982:-1:exon
so has part: feature:2211575-2211714:-1:exon
so has part: feature:2210645-2210806:-1:exon
so has part: feature:2210116-2210220:-1:exon
so has part: feature:2209858-2209932:-1:exon
so has part: feature:2209528-2209632:-1:exon
so has part: feature:2208845-2209024:-1:exon

XP_030139651.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2218053-2218216:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2217293-2217446:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2216618-2216698:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2215904-2216068:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2215693-2215758:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2214285-2214332:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2213659-2213790:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2213281-2213378:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2211915-2211982:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2211575-2211714:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2210645-2210806:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2210116-2210220:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2209858-2209932:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2209528-2209632:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2208845-2209024:-1:exon

PTTG1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: PTTG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2218959..2223236
location: region:2218959-2223236:1
so has part: feature:2218959-2223236:1:exon
subclass of: SO_0000010

101232938
type: Gene
SIO_000068: ncbigene

position:2218959:1
position: 2218959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2223236:1
position: 2223236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2218959-2223236:1:exon

PTTG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: PTTG1
product: PTTG1 regulator of sister chromatid separation, securin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 111 samples with support for all annotated introns
transcript id: XM_030283793.3
SIO_010081: PTTG1
subclass of: SO_0000673
so part of: PTTG1
location: join(2218959..2219064,2219791..2219893,2220175..2220353,2221156..2221234,2221973..2222122,2223083..2223236)
location: region:2218959-2223236:1
so has part: feature:2218959-2219064:1:exon
so has part: feature:2219791-2219893:1:exon
so has part: feature:2220175-2220353:1:exon
so has part: feature:2221156-2221234:1:exon
so has part: feature:2221973-2222122:1:exon
so has part: feature:2223083-2223236:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2218959-2219064:1:exon

position:2219064:1
position: 2219064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2219791-2219893:1:exon

position:2219791:1
position: 2219791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2219893:1
position: 2219893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2220175-2220353:1:exon

position:2220175:1
position: 2220175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2220353:1
position: 2220353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2221156-2221234:1:exon

position:2221156:1
position: 2221156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2221234:1
position: 2221234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2221973-2222122:1:exon

position:2221973:1
position: 2221973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2222122:1
position: 2222122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2223083-2223236:1:exon

position:2223083:1
position: 2223083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PTTG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: PTTG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: securin
translation: MSTLIFVDQENSELHAPKSQLKLPSGSSKALAERTQVNTPLPKKAISTSPVTSRSVRKALGNVNKTEVVTSKTDKLKQKNQPCTVKKTGLESCHAVVEEDWPEIENMFPLDPQDFESFDLPEEHKLSNINLCGVPLMVFERTYDRCVNMASSPAKIEEISWESNLLQSTADFLATLDEIIDMPPPNYDV
SIO_010081: PTTG1
subclass of: SO_0000673
so part of: PTTG1
location: join(2219812..2219893,2220175..2220353,2221156..2221234,2221973..2222122,2223083..2223162)
location: region:2219812-2223162:1
so has part: feature:2219812-2219893:1:exon
so has part: feature:2220175-2220353:1:exon
so has part: feature:2221156-2221234:1:exon
so has part: feature:2221973-2222122:1:exon
so has part: feature:2223083-2223162:1:exon

XP_030139653.3
type: Protein
SIO_000068: ncbiprotein

position:2219812:1
position: 2219812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2223162:1
position: 2223162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2219812-2219893:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2220175-2220353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2221156-2221234:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2221973-2222122:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2223083-2223162:1:exon

LOC115497107
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC115497107
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2229431..2250144
location: region:2229431-2250144:1
so has part: feature:2229431-2250144:1:exon
subclass of: SO_0000011

115497107
type: Gene
SIO_000068: ncbigene

position:2229431:1
position: 2229431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2250144:1
position: 2250144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2229431-2250144:1:exon

LOC115497107
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497107
product: uncharacterized LOC115497107, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005981828.1
SIO_010081: LOC115497107
subclass of: SO_0000673
so part of: LOC115497107
location: join(2229431..2233871,2242551..2246770,2247558..2247663)
location: region:2229431-2247663:1
so has part: feature:2229431-2233871:1:exon
so has part: feature:2242551-2246770:1:exon
so has part: feature:2247558-2247663:1:exon

position:2247663:1
position: 2247663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2229431-2233871:1:exon

position:2233871:1
position: 2233871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2242551-2246770:1:exon

position:2242551:1
position: 2242551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2246770:1
position: 2246770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2247558-2247663:1:exon

position:2247558:1
position: 2247558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115497107
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497107
product: uncharacterized LOC115497107, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005981830.1
SIO_010081: LOC115497107
subclass of: SO_0000673
so part of: LOC115497107
location: join(2229431..2233445,2242551..2246770,2247558..2247663)
location: region:2229431-2247663:1
so has part: feature:2229431-2233445:1:exon
so has part: feature:2242551-2246770:1:exon
so has part: feature:2247558-2247663:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2229431-2233445:1:exon

position:2233445:1
position: 2233445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2242551-2246770:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2247558-2247663:1:exon

LOC115497107
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497107
product: uncharacterized LOC115497107, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_003962680.3
SIO_010081: LOC115497107
subclass of: SO_0000673
so part of: LOC115497107
location: join(2229431..2230389,2232487..2233871,2242551..2246770,2247558..2247663)
location: region:2229431-2247663:1
so has part: feature:2229431-2230389:1:exon
so has part: feature:2232487-2233871:1:exon
so has part: feature:2242551-2246770:1:exon
so has part: feature:2247558-2247663:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2229431-2230389:1:exon

position:2230389:1
position: 2230389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2232487-2233871:1:exon

position:2232487:1
position: 2232487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2242551-2246770:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2247558-2247663:1:exon

LOC115497107
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497107
product: uncharacterized LOC115497107, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_005981829.1
SIO_010081: LOC115497107
subclass of: SO_0000673
so part of: LOC115497107
location: join(2242346..2246770,2249929..2250144)
location: region:2242346-2250144:1
so has part: feature:2242346-2246770:1:exon
so has part: feature:2249929-2250144:1:exon

position:2242346:1
position: 2242346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2242346-2246770:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2249929-2250144:1:exon

position:2249929:1
position: 2249929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115497107
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497107
product: uncharacterized LOC115497107, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_005981832.1
SIO_010081: LOC115497107
subclass of: SO_0000673
so part of: LOC115497107
location: join(2242346..2246312,2246600..2246770,2249929..2250144)
location: region:2242346-2250144:1
so has part: feature:2242346-2246312:1:exon
so has part: feature:2246600-2246770:1:exon
so has part: feature:2249929-2250144:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2242346-2246312:1:exon

position:2246312:1
position: 2246312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2246600-2246770:1:exon

position:2246600:1
position: 2246600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2249929-2250144:1:exon

LOC115497107
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497107
product: uncharacterized LOC115497107, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XR_005981827.1
SIO_010081: LOC115497107
subclass of: SO_0000673
so part of: LOC115497107
location: join(2242346..2246770,2247558..2247663)
location: region:2242346-2247663:1
so has part: feature:2242346-2246770:1:exon
so has part: feature:2247558-2247663:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2242346-2246770:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2247558-2247663:1:exon

LOC115497107
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC115497107
product: uncharacterized LOC115497107, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_005981831.1
SIO_010081: LOC115497107
subclass of: SO_0000673
so part of: LOC115497107
location: join(2242346..2246312,2246600..2246770,2247558..2247663)
location: region:2242346-2247663:1
so has part: feature:2242346-2246312:1:exon
so has part: feature:2246600-2246770:1:exon
so has part: feature:2247558-2247663:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2242346-2246312:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2246600-2246770:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2247558-2247663:1:exon

MIR146C
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
alternative label: tgu-mir-146c
gene: MIR146C
gene synonym: tgu-mir-146c
note: microRNA mir-146c; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 2242641..2242712
location: region:2242641-2242712:1
so has part: feature:2242641-2242712:1:exon
subclass of: SO_0000571

100886659
type: Gene
SIO_000068: ncbigene

MI0013839
type: miRBase
SIO_000068: mirbase

position:2242641:1
position: 2242641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2242712:1
position: 2242712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2242641-2242712:1:exon

MIR146C
type: Precursor RNA
subclass of: SO_0000185
RO_0002162: 59729
alternative label: tgu-mir-146c
gene: MIR146C
gene synonym: tgu-mir-146c
product: microRNA mir-146c
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NR_049147.1
SIO_010081: MIR146C
subclass of: SO_0000673
so part of: MIR146C
location: 2242641..2242712
location: region:2242641-2242712:1
so has part: feature:2242641-2242712:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2242641-2242712:1:exon

MIR146C
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
alternative label: tgu-mir-146c
nc RNA class: miRNA
gene: MIR146C
gene synonym: tgu-mir-146c
product: tgu-miR-146c
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
SIO_010081: MIR146C
subclass of: SO_0000673
so part of: MIR146C
location: 2242651..2242672
location: region:2242651-2242672:1
so has part: feature:2242651-2242672:1:exon

MIMAT0014609
type: miRBase
SIO_000068: mirbase

position:2242651:1
position: 2242651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2242672:1
position: 2242672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2242651-2242672:1:exon

ATP10B
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: ATP10B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2276267..2323741)
location: region:2276267-2323741:-1
so has part: feature:2276267-2323741:-1:exon
subclass of: SO_0000010

100227780
type: Gene
SIO_000068: ncbigene

position:2276267:-1
position: 2276267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2323741:-1
position: 2323741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2276267-2323741:-1:exon

ATP10B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: ATP10B
product: ATPase phospholipid transporting 10B (putative)
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030284291.3
SIO_010081: ATP10B
subclass of: SO_0000673
so part of: ATP10B
location: complement(join(2276267..2279840,2282438..2282625,2283062..2283166,2283273..2283353,2283936..2284136,2285230..2285355,2285899..2285975,2287114..2287426,2289510..2289694,2291190..2291316,2291971..2292077,2292566..2292796,2292997..2293351,2293895..2294074,2297883..2298118,2299037..2299289,2300420..2300547,2302917..2303048,2306568..2306674,2309261..2309346,2310010..2310214,2322647..2322841,2323680..2323741))
location: region:2276267-2323741:-1
so has part: feature:2323680-2323741:-1:exon
so has part: feature:2322647-2322841:-1:exon
so has part: feature:2310010-2310214:-1:exon
so has part: feature:2309261-2309346:-1:exon
so has part: feature:2306568-2306674:-1:exon
so has part: feature:2302917-2303048:-1:exon
so has part: feature:2300420-2300547:-1:exon
so has part: feature:2299037-2299289:-1:exon
so has part: feature:2297883-2298118:-1:exon
so has part: feature:2293895-2294074:-1:exon
so has part: feature:2292997-2293351:-1:exon
so has part: feature:2292566-2292796:-1:exon
so has part: feature:2291971-2292077:-1:exon
so has part: feature:2291190-2291316:-1:exon
so has part: feature:2289510-2289694:-1:exon
so has part: feature:2287114-2287426:-1:exon
so has part: feature:2285899-2285975:-1:exon
so has part: feature:2285230-2285355:-1:exon
so has part: feature:2283936-2284136:-1:exon
so has part: feature:2283273-2283353:-1:exon
so has part: feature:2283062-2283166:-1:exon
so has part: feature:2282438-2282625:-1:exon
so has part: feature:2276267-2279840:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2323680-2323741:-1:exon

position:2323680:-1
position: 2323680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2322647-2322841:-1:exon

position:2322647:-1
position: 2322647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2322841:-1
position: 2322841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2310010-2310214:-1:exon

position:2310010:-1
position: 2310010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2310214:-1
position: 2310214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2309261-2309346:-1:exon

position:2309261:-1
position: 2309261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2309346:-1
position: 2309346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2306568-2306674:-1:exon

position:2306568:-1
position: 2306568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2306674:-1
position: 2306674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2302917-2303048:-1:exon

position:2302917:-1
position: 2302917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2303048:-1
position: 2303048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2300420-2300547:-1:exon

position:2300420:-1
position: 2300420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2300547:-1
position: 2300547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2299037-2299289:-1:exon

position:2299037:-1
position: 2299037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2299289:-1
position: 2299289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2297883-2298118:-1:exon

position:2297883:-1
position: 2297883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2298118:-1
position: 2298118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2293895-2294074:-1:exon

position:2293895:-1
position: 2293895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2294074:-1
position: 2294074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2292997-2293351:-1:exon

position:2292997:-1
position: 2292997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2293351:-1
position: 2293351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2292566-2292796:-1:exon

position:2292566:-1
position: 2292566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2292796:-1
position: 2292796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2291971-2292077:-1:exon

position:2291971:-1
position: 2291971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2292077:-1
position: 2292077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2291190-2291316:-1:exon

position:2291190:-1
position: 2291190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2291316:-1
position: 2291316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2289510-2289694:-1:exon

position:2289510:-1
position: 2289510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2289694:-1
position: 2289694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2287114-2287426:-1:exon

position:2287114:-1
position: 2287114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2287426:-1
position: 2287426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2285899-2285975:-1:exon

position:2285899:-1
position: 2285899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2285975:-1
position: 2285975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2285230-2285355:-1:exon

position:2285230:-1
position: 2285230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2285355:-1
position: 2285355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2283936-2284136:-1:exon

position:2283936:-1
position: 2283936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2284136:-1
position: 2284136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2283273-2283353:-1:exon

position:2283273:-1
position: 2283273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2283353:-1
position: 2283353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2283062-2283166:-1:exon

position:2283062:-1
position: 2283062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2283166:-1
position: 2283166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:2282438-2282625:-1:exon

position:2282438:-1
position: 2282438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2282625:-1
position: 2282625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:2276267-2279840:-1:exon

position:2279840:-1
position: 2279840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ATP10B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: ATP10B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phospholipid-transporting ATPase VB
translation: MHLSFSLPFLLRMALSVDSARLGNLYFLFLMVLNWFPLVEVFHKEITMLPLVIVLLASMIKDAIEDYRKYQYDKTINFTKTRVYDKEEHAYVEKCWKDVRVGDFVQLQCNEIVPADILLLYSSDQNGICHLETANLDGETNLKQRRVVTGFSSQDTVFEPEFFQNTIICEMPNNDLNKFKGYMEQPDHEQVGLNIENLLLRGCTIRNTEAAAGIVIYAGHETKAMLNNSGPRYKRSRIEQRMNRDIFLCVGLLFVMCLVGAVGHGIWTGKFWEHPPYDVPDWNGNFVAPVLAGFYMFLTMIILLQILIPISLYVSIELVKLGQVFLIHNDIDLYDEEADLPIQCRALTITEDLGQIQYIFSDKTGTLTENKMVFRRCTVDGLEFSHQENDRRLKTQKALDLDREDFTKLQHFTLPPMNLGRAATVKPSTMRPLRRCQSDRARTQGHARSRSVGRRDSSQSQVAFSSPIEKDVTPDSRLLRQVREAALQTESFSPFIHMKTSTSFTDFFLALAICNSVLVSTATAPRQRVTIPPPIKPSGITLEKIHQIFQRLKLASLSQSFSSSQSSSQLGASFSAKNTEEPLAVLESCDNENDSSASSGGQELQDKGSTEIGTASLDEVFRSATNTSLPTDFCYEAESPDEAALVYAAQAYGFILVSRTPEQVTVQLPQGTLLTFDILYTLGFDSVRRRMSVVVRHPLTKEIVVYTKGADSVIMDLLDNSTKGNISSDKRLKRIKERTQKHLDYYAHDGLRTLCIAKKVLNEDDFQKWANFRREAEAAIENRDELLIETAQHLETKLTLLGATGIEDRLQDGVPDTIVSLREAGIKVWVLTGDKQETAVNIAYSCKLLNQRDTVFTINTENKETCESLLNLTLEEVKKNYEYDKPQRKLFGIIPTSFSAPEAPSPEFGLVIDGRTLDIIFQGGLEEKFLALARRCRSVLCCRSTPLQKSMVVKLVRRQLKAMTLSIGDGANDVSMIQAANVGIGISGQEGMQAVMASDFAISRFKHLKKLLLVHGHWCYARLAKMVIYFFYKNVCYVNLLFWYQFFCGFSGSTMIDYWQMIFFNLFFTSVPPLLFGALDRDVSAETLLRLPELYKNGQNSEIYNLSTFIITMLDAFYQSLICFFVPYLMYKDSDIDVFSFGNPINTISLLTILLHQALEMKTWTVLQLVVMICSVAFYLIFSIIYNAACLLCSPPTNPYWIMERQLKDPIFYLLCLITPVIALLPRFFIFALRGTLGASLVLKAQQIEKLPKEQQDLEIQKLRSRKEATSDAPVASPTSNDDLDQSSSHLCVSPFLPSAAALPPRDTENQGVSASNPLGRRTHDEGCYFFNRWAEEESSATDSSAGPSSGHQPLVASRETAPGQDGGKLTKDYLKNFNYGSHRRSVSSVTL
SIO_010081: ATP10B
subclass of: SO_0000673
so part of: ATP10B
location: complement(join(2279342..2279840,2282438..2282625,2283062..2283166,2283273..2283353,2283936..2284136,2285230..2285355,2285899..2285975,2287114..2287426,2289510..2289694,2291190..2291316,2291971..2292077,2292566..2292796,2292997..2293351,2293895..2294074,2297883..2298118,2299037..2299289,2300420..2300547,2302917..2303048,2306568..2306674,2309261..2309346,2310010..2310214,2322647..2322841,2323680..2323741))
location: region:2279342-2323741:-1
so has part: feature:2323680-2323741:-1:exon
so has part: feature:2322647-2322841:-1:exon
so has part: feature:2310010-2310214:-1:exon
so has part: feature:2309261-2309346:-1:exon
so has part: feature:2306568-2306674:-1:exon
so has part: feature:2302917-2303048:-1:exon
so has part: feature:2300420-2300547:-1:exon
so has part: feature:2299037-2299289:-1:exon
so has part: feature:2297883-2298118:-1:exon
so has part: feature:2293895-2294074:-1:exon
so has part: feature:2292997-2293351:-1:exon
so has part: feature:2292566-2292796:-1:exon
so has part: feature:2291971-2292077:-1:exon
so has part: feature:2291190-2291316:-1:exon
so has part: feature:2289510-2289694:-1:exon
so has part: feature:2287114-2287426:-1:exon
so has part: feature:2285899-2285975:-1:exon
so has part: feature:2285230-2285355:-1:exon
so has part: feature:2283936-2284136:-1:exon
so has part: feature:2283273-2283353:-1:exon
so has part: feature:2283062-2283166:-1:exon
so has part: feature:2282438-2282625:-1:exon
so has part: feature:2279342-2279840:-1:exon

XP_030140151.3
type: Protein
SIO_000068: ncbiprotein

position:2279342:-1
position: 2279342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2323680-2323741:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2322647-2322841:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2310010-2310214:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2309261-2309346:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2306568-2306674:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2302917-2303048:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2300420-2300547:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2299037-2299289:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2297883-2298118:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2293895-2294074:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2292997-2293351:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2292566-2292796:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2291971-2292077:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2291190-2291316:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2289510-2289694:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2287114-2287426:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2285899-2285975:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2285230-2285355:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2283936-2284136:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2283273-2283353:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2283062-2283166:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2282438-2282625:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2279342-2279840:-1:exon

GABRB2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: GABRB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2501272..2635718)
location: region:2501272-2635718:-1
so has part: feature:2501272-2635718:-1:exon
subclass of: SO_0000010

100227722
type: Gene
SIO_000068: ncbigene

position:2501272:-1
position: 2501272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2635718:-1
position: 2635718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2501272-2635718:-1:exon

GABRB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRB2
product: gamma-aminobutyric acid type A receptor subunit beta2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 25 ESTs, 33 long SRA reads, 20 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns
transcript id: XM_030284134.3
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2501272..2507346,2510927..2510977,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633789,2634567..2634684,2635456..2635718))
location: region:2501272-2635718:-1
so has part: feature:2635456-2635718:-1:exon
so has part: feature:2634567-2634684:-1:exon
so has part: feature:2633557-2633789:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2510927-2510977:-1:exon
so has part: feature:2501272-2507346:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2635456-2635718:-1:exon

position:2635456:-1
position: 2635456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2634567-2634684:-1:exon

position:2634567:-1
position: 2634567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2634684:-1
position: 2634684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2633557-2633789:-1:exon

position:2633557:-1
position: 2633557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2633789:-1
position: 2633789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2633340-2633431:-1:exon

position:2633340:-1
position: 2633340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2633431:-1
position: 2633431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2632496-2632563:-1:exon

position:2632496:-1
position: 2632496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2632563:-1
position: 2632563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2591031-2591251:-1:exon

position:2591031:-1
position: 2591031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2591251:-1
position: 2591251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2561505-2561587:-1:exon

position:2561505:-1
position: 2561505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2561587:-1
position: 2561587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2526043-2526180:-1:exon

position:2526043:-1
position: 2526043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2526180:-1
position: 2526180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2524725-2524877:-1:exon

position:2524725:-1
position: 2524725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2524877:-1
position: 2524877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2521263-2521507:-1:exon

position:2521263:-1
position: 2521263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2521507:-1
position: 2521507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2510927-2510977:-1:exon

position:2510927:-1
position: 2510927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2510977:-1
position: 2510977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2501272-2507346:-1:exon

position:2507346:-1
position: 2507346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GABRB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRB2
product: gamma-aminobutyric acid type A receptor subunit beta2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 25 ESTs, 32 long SRA reads, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
transcript id: XM_030284135.3
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2501272..2507346,2510927..2510977,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633789,2634567..2634684,2635607..2635708))
location: region:2501272-2635708:-1
so has part: feature:2635607-2635708:-1:exon
so has part: feature:2634567-2634684:-1:exon
so has part: feature:2633557-2633789:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2510927-2510977:-1:exon
so has part: feature:2501272-2507346:-1:exon

position:2635708:-1
position: 2635708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2635607-2635708:-1:exon

position:2635607:-1
position: 2635607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2634567-2634684:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2633557-2633789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2510927-2510977:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2501272-2507346:-1:exon

GABRB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRB2
product: gamma-aminobutyric acid type A receptor subunit beta2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 25 ESTs, 31 long SRA reads, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
transcript id: XM_032750871.2
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2501272..2507346,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633789,2634567..2634684,2635607..2635706))
location: region:2501272-2635706:-1
so has part: feature:2635607-2635706:-1:exon
so has part: feature:2634567-2634684:-1:exon
so has part: feature:2633557-2633789:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2501272-2507346:-1:exon

position:2635706:-1
position: 2635706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2635607-2635706:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2634567-2634684:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2633557-2633789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2501272-2507346:-1:exon

GABRB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRB2
product: gamma-aminobutyric acid type A receptor subunit beta2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 25 ESTs, 31 long SRA reads, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns
transcript id: XM_032750870.2
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2501272..2507346,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633789,2634567..2634684,2635456..2635560))
location: region:2501272-2635560:-1
so has part: feature:2635456-2635560:-1:exon
so has part: feature:2634567-2634684:-1:exon
so has part: feature:2633557-2633789:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2501272-2507346:-1:exon

position:2635560:-1
position: 2635560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2635456-2635560:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2634567-2634684:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2633557-2633789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2501272-2507346:-1:exon

GABRB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRB2
product: gamma-aminobutyric acid type A receptor subunit beta2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 25 ESTs, 49 long SRA reads, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
transcript id: XM_030284133.3
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2501272..2507346,2510927..2510977,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633789,2634567..2634684,2634839..2635061))
location: region:2501272-2635061:-1
so has part: feature:2634839-2635061:-1:exon
so has part: feature:2634567-2634684:-1:exon
so has part: feature:2633557-2633789:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2510927-2510977:-1:exon
so has part: feature:2501272-2507346:-1:exon

position:2635061:-1
position: 2635061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2634839-2635061:-1:exon

position:2634839:-1
position: 2634839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2634567-2634684:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2633557-2633789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2510927-2510977:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2501272-2507346:-1:exon

GABRB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRB2
product: gamma-aminobutyric acid type A receptor subunit beta2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 25 ESTs, 57 long SRA reads, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 81 samples with support for all annotated introns
transcript id: XM_030284136.3
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2501272..2507346,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633789,2634567..2634684,2634839..2635028))
location: region:2501272-2635028:-1
so has part: feature:2634839-2635028:-1:exon
so has part: feature:2634567-2634684:-1:exon
so has part: feature:2633557-2633789:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2501272-2507346:-1:exon

position:2635028:-1
position: 2635028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2634839-2635028:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2634567-2634684:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2633557-2633789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2501272-2507346:-1:exon

GABRB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit beta-2 isoform X2
translation: MLRVRKKGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDNAVTGVTKIELPQFSIVDYKLITKNVVFSTGAYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKLRMDVNKMDPHENILLSTLEIKNEMAASEAVMGLGDPRSTMLAYDTSSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2506999..2507346,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633633))
location: region:2506999-2633633:-1
so has part: feature:2633557-2633633:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2506999-2507346:-1:exon

XP_030139996.1
type: Protein
SIO_000068: ncbiprotein

position:2506999:-1
position: 2506999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2633633:-1
position: 2633633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2633557-2633633:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2506999-2507346:-1:exon

GABRB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit beta-2 isoform X2
translation: MLRVRKKGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDNAVTGVTKIELPQFSIVDYKLITKNVVFSTGAYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKLRMDVNKMDPHENILLSTLEIKNEMAASEAVMGLGDPRSTMLAYDTSSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2506999..2507346,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633633))
location: region:2506999-2633633:-1
so has part: feature:2633557-2633633:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2506999-2507346:-1:exon

XP_032606761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2633557-2633633:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2506999-2507346:-1:exon

GABRB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit beta-2 isoform X2
translation: MLRVRKKGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDNAVTGVTKIELPQFSIVDYKLITKNVVFSTGAYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKLRMDVNKMDPHENILLSTLEIKNEMAASEAVMGLGDPRSTMLAYDTSSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2506999..2507346,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633633))
location: region:2506999-2633633:-1
so has part: feature:2633557-2633633:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2506999-2507346:-1:exon

XP_032606762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2633557-2633633:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2506999-2507346:-1:exon

GABRB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit beta-2 isoform X1
translation: MLRVRKKGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDNAVTGVTKIELPQFSIVDYKLITKNVVFSTGAYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKLRMDVNKDRRIIGTYHCPEMYSTKMDPHENILLSTLEIKNEMAASEAVMGLGDPRSTMLAYDTSSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2506999..2507346,2510927..2510977,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633633))
location: region:2506999-2633633:-1
so has part: feature:2633557-2633633:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2510927-2510977:-1:exon
so has part: feature:2506999-2507346:-1:exon

XP_030139993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2633557-2633633:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2510927-2510977:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2506999-2507346:-1:exon

GABRB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit beta-2 isoform X1
translation: MLRVRKKGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDNAVTGVTKIELPQFSIVDYKLITKNVVFSTGAYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKLRMDVNKDRRIIGTYHCPEMYSTKMDPHENILLSTLEIKNEMAASEAVMGLGDPRSTMLAYDTSSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2506999..2507346,2510927..2510977,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633633))
location: region:2506999-2633633:-1
so has part: feature:2633557-2633633:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2510927-2510977:-1:exon
so has part: feature:2506999-2507346:-1:exon

XP_030139994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2633557-2633633:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2510927-2510977:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2506999-2507346:-1:exon

GABRB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit beta-2 isoform X1
translation: MLRVRKKGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDNAVTGVTKIELPQFSIVDYKLITKNVVFSTGAYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKLRMDVNKDRRIIGTYHCPEMYSTKMDPHENILLSTLEIKNEMAASEAVMGLGDPRSTMLAYDTSSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
SIO_010081: GABRB2
subclass of: SO_0000673
so part of: GABRB2
location: complement(join(2506999..2507346,2510927..2510977,2521263..2521507,2524725..2524877,2526043..2526180,2561505..2561587,2591031..2591251,2632496..2632563,2633340..2633431,2633557..2633633))
location: region:2506999-2633633:-1
so has part: feature:2633557-2633633:-1:exon
so has part: feature:2633340-2633431:-1:exon
so has part: feature:2632496-2632563:-1:exon
so has part: feature:2591031-2591251:-1:exon
so has part: feature:2561505-2561587:-1:exon
so has part: feature:2526043-2526180:-1:exon
so has part: feature:2524725-2524877:-1:exon
so has part: feature:2521263-2521507:-1:exon
so has part: feature:2510927-2510977:-1:exon
so has part: feature:2506999-2507346:-1:exon

XP_030139995.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2633557-2633633:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2633340-2633431:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2632496-2632563:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2591031-2591251:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2561505-2561587:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2526043-2526180:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2524725-2524877:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2521263-2521507:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2510927-2510977:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2506999-2507346:-1:exon

LOC121470669
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: LOC121470669
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2529989..2554244)
location: region:2529989-2554244:-1
so has part: feature:2529989-2554244:-1:exon
subclass of: SO_0000011

121470669
type: Gene
SIO_000068: ncbigene

position:2529989:-1
position: 2529989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2554244:-1
position: 2554244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2529989-2554244:-1:exon

LOC121470669
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 59729
nc RNA class: lncRNA
gene: LOC121470669
product: uncharacterized LOC121470669
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
transcript id: XR_005981803.1
SIO_010081: LOC121470669
subclass of: SO_0000673
so part of: LOC121470669
location: complement(join(2529989..2553466,2553644..2554244))
location: region:2529989-2554244:-1
so has part: feature:2553644-2554244:-1:exon
so has part: feature:2529989-2553466:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2553644-2554244:-1:exon

position:2553644:-1
position: 2553644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2529989-2553466:-1:exon

position:2553466:-1
position: 2553466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GABRA6
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: GABRA6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2676672..2699818
location: region:2676672-2699818:1
so has part: feature:2676672-2699818:1:exon
subclass of: SO_0000010

100224835
type: Gene
SIO_000068: ncbigene

position:2676672:1
position: 2676672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2699818:1
position: 2699818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2676672-2699818:1:exon

GABRA6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRA6
product: gamma-aminobutyric acid type A receptor subunit alpha6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 58 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_002193305.4
SIO_010081: GABRA6
subclass of: SO_0000673
so part of: GABRA6
location: join(2676672..2676891,2676985..2677103,2677358..2677425,2678703..2678923,2679025..2679107,2679677..2679820,2680236..2680388,2683655..2683914,2692656..2692916,2697853..2699818)
location: region:2676672-2699818:1
so has part: feature:2676672-2676891:1:exon
so has part: feature:2676985-2677103:1:exon
so has part: feature:2677358-2677425:1:exon
so has part: feature:2678703-2678923:1:exon
so has part: feature:2679025-2679107:1:exon
so has part: feature:2679677-2679820:1:exon
so has part: feature:2680236-2680388:1:exon
so has part: feature:2683655-2683914:1:exon
so has part: feature:2692656-2692916:1:exon
so has part: feature:2697853-2699818:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2676672-2676891:1:exon

position:2676891:1
position: 2676891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2676985-2677103:1:exon

position:2676985:1
position: 2676985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2677103:1
position: 2677103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2677358-2677425:1:exon

position:2677358:1
position: 2677358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2677425:1
position: 2677425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2678703-2678923:1:exon

position:2678703:1
position: 2678703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2678923:1
position: 2678923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2679025-2679107:1:exon

position:2679025:1
position: 2679025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2679107:1
position: 2679107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2679677-2679820:1:exon

position:2679677:1
position: 2679677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2679820:1
position: 2679820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2680236-2680388:1:exon

position:2680236:1
position: 2680236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2680388:1
position: 2680388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2683655-2683914:1:exon

position:2683655:1
position: 2683655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2683914:1
position: 2683914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2692656-2692916:1:exon

position:2692656:1
position: 2692656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2692916:1
position: 2692916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2697853-2699818:1:exon

position:2697853:1
position: 2697853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABRA6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRA6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-6
translation: MALLLAWACVAVSVGTALGDQGDGADLYSENITRILDKLLDGYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFSGPTEILRLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLHSVEVPQESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQTQRAMRKAARAAALAAALSAATVPAEDEIVSHSDSNSNLKKRVNSITSQAEQSPEPSIISNTASQCQPLPVPPPAPPQPPPIGGASKIDQYSRILFPVAFAGFNLVYWVVYLSKDTMEFFEPSAMHFRNDPQSN
SIO_010081: GABRA6
subclass of: SO_0000673
so part of: GABRA6
location: join(2676854..2676891,2676985..2677103,2677358..2677425,2678703..2678923,2679025..2679107,2679677..2679820,2680236..2680388,2683655..2683914,2692656..2692916,2697853..2697903)
location: region:2676854-2697903:1
so has part: feature:2676854-2676891:1:exon
so has part: feature:2676985-2677103:1:exon
so has part: feature:2677358-2677425:1:exon
so has part: feature:2678703-2678923:1:exon
so has part: feature:2679025-2679107:1:exon
so has part: feature:2679677-2679820:1:exon
so has part: feature:2680236-2680388:1:exon
so has part: feature:2683655-2683914:1:exon
so has part: feature:2692656-2692916:1:exon
so has part: feature:2697853-2697903:1:exon

XP_002193341.1
type: Protein
SIO_000068: ncbiprotein

position:2676854:1
position: 2676854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2697903:1
position: 2697903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2676854-2676891:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2676985-2677103:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2677358-2677425:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2678703-2678923:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2679025-2679107:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2679677-2679820:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2680236-2680388:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2683655-2683914:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2692656-2692916:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2697853-2697903:1:exon

GABRA1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: GABRA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2749626..2791239
location: region:2749626-2791239:1
so has part: feature:2749626-2791239:1:exon
subclass of: SO_0000010

751992
type: Gene
SIO_000068: ncbigene

position:2749626:1
position: 2749626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2791239:1
position: 2791239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2749626-2791239:1:exon

GABRA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRA1
product: gamma-aminobutyric acid type A receptor subunit alpha1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs, 8 long SRA reads, 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 121 samples with support for all annotated introns
transcript id: XM_012575906.4
SIO_010081: GABRA1
subclass of: SO_0000673
so part of: GABRA1
location: join(2749626..2749744,2752064..2752151,2755888..2756000,2765520..2765587,2770578..2770798,2772365..2772447,2776932..2777075,2782002..2782154,2784725..2784927,2788424..2791239)
location: region:2749626-2791239:1
so has part: feature:2749626-2749744:1:exon
so has part: feature:2752064-2752151:1:exon
so has part: feature:2755888-2756000:1:exon
so has part: feature:2765520-2765587:1:exon
so has part: feature:2770578-2770798:1:exon
so has part: feature:2772365-2772447:1:exon
so has part: feature:2776932-2777075:1:exon
so has part: feature:2782002-2782154:1:exon
so has part: feature:2784725-2784927:1:exon
so has part: feature:2788424-2791239:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2749626-2749744:1:exon

position:2749744:1
position: 2749744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2752064-2752151:1:exon

position:2752064:1
position: 2752064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2752151:1
position: 2752151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2755888-2756000:1:exon

position:2755888:1
position: 2755888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2756000:1
position: 2756000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2765520-2765587:1:exon

position:2765520:1
position: 2765520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2765587:1
position: 2765587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2770578-2770798:1:exon

position:2770578:1
position: 2770578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2770798:1
position: 2770798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2772365-2772447:1:exon

position:2772365:1
position: 2772365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2772447:1
position: 2772447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2776932-2777075:1:exon

position:2776932:1
position: 2776932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2777075:1
position: 2777075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2782002-2782154:1:exon

position:2782002:1
position: 2782002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2782154:1
position: 2782154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2784725-2784927:1:exon

position:2784725:1
position: 2784725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2784927:1
position: 2784927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2788424-2791239:1:exon

position:2788424:1
position: 2788424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABRA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRA1
product: gamma-aminobutyric acid type A receptor subunit alpha1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 18 ESTs, 6 long SRA reads, 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 88 samples with support for all annotated introns
transcript id: XM_030284103.3
SIO_010081: GABRA1
subclass of: SO_0000673
so part of: GABRA1
location: join(2749816..2749947,2752064..2752151,2755888..2756000,2765520..2765587,2770578..2770798,2772365..2772447,2776932..2777075,2782002..2782154,2784725..2784927,2788424..2791239)
location: region:2749816-2791239:1
so has part: feature:2749816-2749947:1:exon
so has part: feature:2752064-2752151:1:exon
so has part: feature:2755888-2756000:1:exon
so has part: feature:2765520-2765587:1:exon
so has part: feature:2770578-2770798:1:exon
so has part: feature:2772365-2772447:1:exon
so has part: feature:2776932-2777075:1:exon
so has part: feature:2782002-2782154:1:exon
so has part: feature:2784725-2784927:1:exon
so has part: feature:2788424-2791239:1:exon

position:2749816:1
position: 2749816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2749816-2749947:1:exon

position:2749947:1
position: 2749947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2752064-2752151:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2755888-2756000:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2765520-2765587:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2770578-2770798:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2772365-2772447:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2776932-2777075:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2782002-2782154:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2784725-2784927:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2788424-2791239:1:exon

GABRA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRA1
product: gamma-aminobutyric acid type A receptor subunit alpha1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 19 ESTs, 6 long SRA reads, 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns
transcript id: XM_002193396.5
SIO_010081: GABRA1
subclass of: SO_0000673
so part of: GABRA1
location: join(2749986..2750233,2752064..2752151,2755888..2756000,2765520..2765587,2770578..2770798,2772365..2772447,2776932..2777075,2782002..2782154,2784725..2784927,2788424..2791239)
location: region:2749986-2791239:1
so has part: feature:2749986-2750233:1:exon
so has part: feature:2752064-2752151:1:exon
so has part: feature:2755888-2756000:1:exon
so has part: feature:2765520-2765587:1:exon
so has part: feature:2770578-2770798:1:exon
so has part: feature:2772365-2772447:1:exon
so has part: feature:2776932-2777075:1:exon
so has part: feature:2782002-2782154:1:exon
so has part: feature:2784725-2784927:1:exon
so has part: feature:2788424-2791239:1:exon

position:2749986:1
position: 2749986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2749986-2750233:1:exon

position:2750233:1
position: 2750233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2752064-2752151:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2755888-2756000:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2765520-2765587:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2770578-2770798:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2772365-2772447:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2776932-2777075:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2782002-2782154:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2784725-2784927:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2788424-2791239:1:exon

GABRA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-1
translation: MKRFLVLCDCLWAWSLLLNALTERSYGQTSSQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDPLIKKNNTYTAAATSYTPNIARDPGLATIAKSATIEPKEVKPETKPAEPKKTFNSVSKIDRLSRIAFPLLFGIFNLVYWATYLNREPQLKVQTPHQ
SIO_010081: GABRA1
subclass of: SO_0000673
so part of: GABRA1
location: join(2752078..2752151,2755888..2756000,2765520..2765587,2770578..2770798,2772365..2772447,2776932..2777075,2782002..2782154,2784725..2784927,2788424..2788732)
location: region:2752078-2788732:1
so has part: feature:2752078-2752151:1:exon
so has part: feature:2755888-2756000:1:exon
so has part: feature:2765520-2765587:1:exon
so has part: feature:2770578-2770798:1:exon
so has part: feature:2772365-2772447:1:exon
so has part: feature:2776932-2777075:1:exon
so has part: feature:2782002-2782154:1:exon
so has part: feature:2784725-2784927:1:exon
so has part: feature:2788424-2788732:1:exon

XP_030139963.1
type: Protein
SIO_000068: ncbiprotein

position:2752078:1
position: 2752078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2788732:1
position: 2788732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2752078-2752151:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2755888-2756000:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2765520-2765587:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2770578-2770798:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2772365-2772447:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2776932-2777075:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2782002-2782154:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2784725-2784927:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2788424-2788732:1:exon

GABRA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-1
translation: MKRFLVLCDCLWAWSLLLNALTERSYGQTSSQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDPLIKKNNTYTAAATSYTPNIARDPGLATIAKSATIEPKEVKPETKPAEPKKTFNSVSKIDRLSRIAFPLLFGIFNLVYWATYLNREPQLKVQTPHQ
SIO_010081: GABRA1
subclass of: SO_0000673
so part of: GABRA1
location: join(2752078..2752151,2755888..2756000,2765520..2765587,2770578..2770798,2772365..2772447,2776932..2777075,2782002..2782154,2784725..2784927,2788424..2788732)
location: region:2752078-2788732:1
so has part: feature:2752078-2752151:1:exon
so has part: feature:2755888-2756000:1:exon
so has part: feature:2765520-2765587:1:exon
so has part: feature:2770578-2770798:1:exon
so has part: feature:2772365-2772447:1:exon
so has part: feature:2776932-2777075:1:exon
so has part: feature:2782002-2782154:1:exon
so has part: feature:2784725-2784927:1:exon
so has part: feature:2788424-2788732:1:exon

XP_002193432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2752078-2752151:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2755888-2756000:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2765520-2765587:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2770578-2770798:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2772365-2772447:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2776932-2777075:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2782002-2782154:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2784725-2784927:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2788424-2788732:1:exon

GABRA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-1
translation: MKRFLVLCDCLWAWSLLLNALTERSYGQTSSQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDPLIKKNNTYTAAATSYTPNIARDPGLATIAKSATIEPKEVKPETKPAEPKKTFNSVSKIDRLSRIAFPLLFGIFNLVYWATYLNREPQLKVQTPHQ
SIO_010081: GABRA1
subclass of: SO_0000673
so part of: GABRA1
location: join(2752078..2752151,2755888..2756000,2765520..2765587,2770578..2770798,2772365..2772447,2776932..2777075,2782002..2782154,2784725..2784927,2788424..2788732)
location: region:2752078-2788732:1
so has part: feature:2752078-2752151:1:exon
so has part: feature:2755888-2756000:1:exon
so has part: feature:2765520-2765587:1:exon
so has part: feature:2770578-2770798:1:exon
so has part: feature:2772365-2772447:1:exon
so has part: feature:2776932-2777075:1:exon
so has part: feature:2782002-2782154:1:exon
so has part: feature:2784725-2784927:1:exon
so has part: feature:2788424-2788732:1:exon

XP_012431360.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2752078-2752151:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2755888-2756000:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2765520-2765587:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2770578-2770798:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2772365-2772447:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2776932-2777075:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2782002-2782154:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2784725-2784927:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2788424-2788732:1:exon

GABRG2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: GABRG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2852264..2911378
location: region:2852264-2911378:1
so has part: feature:2852264-2911378:1:exon
subclass of: SO_0000010

100228742
type: Gene
SIO_000068: ncbigene

position:2852264:1
position: 2852264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2911378:1
position: 2911378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2852264-2911378:1:exon

GABRG2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRG2
product: gamma-aminobutyric acid type A receptor subunit gamma2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 20 ESTs, 6 long SRA reads, 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 110 samples with support for all annotated introns
transcript id: XM_030284101.3
SIO_010081: GABRG2
subclass of: SO_0000673
so part of: GABRG2
location: join(2852264..2853028,2875925..2876073,2877674..2877741,2878489..2878709,2880231..2880313,2881004..2881141,2905198..2905350,2906887..2907092,2907910..2907933,2909374..2911378)
location: region:2852264-2911378:1
so has part: feature:2852264-2853028:1:exon
so has part: feature:2875925-2876073:1:exon
so has part: feature:2877674-2877741:1:exon
so has part: feature:2878489-2878709:1:exon
so has part: feature:2880231-2880313:1:exon
so has part: feature:2881004-2881141:1:exon
so has part: feature:2905198-2905350:1:exon
so has part: feature:2906887-2907092:1:exon
so has part: feature:2907910-2907933:1:exon
so has part: feature:2909374-2911378:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2852264-2853028:1:exon

position:2853028:1
position: 2853028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2875925-2876073:1:exon

position:2875925:1
position: 2875925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2876073:1
position: 2876073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2877674-2877741:1:exon

position:2877674:1
position: 2877674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2877741:1
position: 2877741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2878489-2878709:1:exon

position:2878489:1
position: 2878489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2878709:1
position: 2878709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2880231-2880313:1:exon

position:2880231:1
position: 2880231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2880313:1
position: 2880313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2881004-2881141:1:exon

position:2881004:1
position: 2881004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2881141:1
position: 2881141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2905198-2905350:1:exon

position:2905198:1
position: 2905198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2905350:1
position: 2905350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2906887-2907092:1:exon

position:2906887:1
position: 2906887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2907092:1
position: 2907092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2907910-2907933:1:exon

position:2907910:1
position: 2907910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2907933:1
position: 2907933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2909374-2911378:1:exon

position:2909374:1
position: 2909374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABRG2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: GABRG2
product: gamma-aminobutyric acid type A receptor subunit gamma2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 1 long SRA read, 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 92 samples with support for all annotated introns
transcript id: XM_030284102.3
SIO_010081: GABRG2
subclass of: SO_0000673
so part of: GABRG2
location: join(2852879..2853028,2875925..2876073,2877674..2877741,2878489..2878709,2880231..2880313,2881004..2881141,2905198..2905350,2906887..2907092,2909374..2911378)
location: region:2852879-2911378:1
so has part: feature:2852879-2853028:1:exon
so has part: feature:2875925-2876073:1:exon
so has part: feature:2877674-2877741:1:exon
so has part: feature:2878489-2878709:1:exon
so has part: feature:2880231-2880313:1:exon
so has part: feature:2881004-2881141:1:exon
so has part: feature:2905198-2905350:1:exon
so has part: feature:2906887-2907092:1:exon
so has part: feature:2909374-2911378:1:exon

position:2852879:1
position: 2852879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2852879-2853028:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2875925-2876073:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2877674-2877741:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2878489-2878709:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2880231-2880313:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2881004-2881141:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2905198-2905350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2906887-2907092:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2909374-2911378:1:exon

GABRG2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit gamma-2 isoform X1
translation: MIPPNPTSLGSTAFLNPAFSLKMMVWALLFLSLIQCSTQKGDDDYEDYTSNKTWVLTPKVHESDVTLILNGLLEGYDNKLRPDIGVKPTIIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNSTIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDVHSCPLEFSSYGYPREEIIYQWKRSSVEVGDTRSWRLYQFAFTGLRNTTEVVKTTSGDYVVMSVFFNLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYFVSNRKPSKDKDKKKKNPLLRMFSFKAPTIDIRPRSATIQMNNATHLQERDEEYGYECLDGKDCASFFCCFEDCRTGAWRHGRIHIRIAKMDSYARIFFPTAFCLFNLVYWVSYLYL
SIO_010081: GABRG2
subclass of: SO_0000673
so part of: GABRG2
location: join(2852922..2853028,2875925..2876073,2877674..2877741,2878489..2878709,2880231..2880313,2881004..2881141,2905198..2905350,2906887..2907092,2907910..2907933,2909374..2909649)
location: region:2852922-2909649:1
so has part: feature:2852922-2853028:1:exon
so has part: feature:2875925-2876073:1:exon
so has part: feature:2877674-2877741:1:exon
so has part: feature:2878489-2878709:1:exon
so has part: feature:2880231-2880313:1:exon
so has part: feature:2881004-2881141:1:exon
so has part: feature:2905198-2905350:1:exon
so has part: feature:2906887-2907092:1:exon
so has part: feature:2907910-2907933:1:exon
so has part: feature:2909374-2909649:1:exon

XP_030139961.1
type: Protein
SIO_000068: ncbiprotein

position:2852922:1
position: 2852922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2909649:1
position: 2909649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2852922-2853028:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2875925-2876073:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2877674-2877741:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2878489-2878709:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2880231-2880313:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2881004-2881141:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2905198-2905350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2906887-2907092:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2907910-2907933:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2909374-2909649:1:exon

GABRG2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: GABRG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit gamma-2 isoform X2
translation: MIPPNPTSLGSTAFLNPAFSLKMMVWALLFLSLIQCSTQKGDDDYEDYTSNKTWVLTPKVHESDVTLILNGLLEGYDNKLRPDIGVKPTIIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNSTIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDVHSCPLEFSSYGYPREEIIYQWKRSSVEVGDTRSWRLYQFAFTGLRNTTEVVKTTSGDYVVMSVFFNLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYFVSNRKPSKDKDKKKKNPAPTIDIRPRSATIQMNNATHLQERDEEYGYECLDGKDCASFFCCFEDCRTGAWRHGRIHIRIAKMDSYARIFFPTAFCLFNLVYWVSYLYL
SIO_010081: GABRG2
subclass of: SO_0000673
so part of: GABRG2
location: join(2852922..2853028,2875925..2876073,2877674..2877741,2878489..2878709,2880231..2880313,2881004..2881141,2905198..2905350,2906887..2907092,2909374..2909649)
location: region:2852922-2909649:1
so has part: feature:2852922-2853028:1:exon
so has part: feature:2875925-2876073:1:exon
so has part: feature:2877674-2877741:1:exon
so has part: feature:2878489-2878709:1:exon
so has part: feature:2880231-2880313:1:exon
so has part: feature:2881004-2881141:1:exon
so has part: feature:2905198-2905350:1:exon
so has part: feature:2906887-2907092:1:exon
so has part: feature:2909374-2909649:1:exon

XP_030139962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2852922-2853028:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2875925-2876073:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2877674-2877741:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2878489-2878709:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2880231-2880313:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2881004-2881141:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2905198-2905350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2906887-2907092:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2909374-2909649:1:exon

CCNG1
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: CCNG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3199049..3204707
location: region:3199049-3204707:1
so has part: feature:3199049-3204707:1:exon
subclass of: SO_0000010

100219074
type: Gene
SIO_000068: ncbigene

position:3199049:1
position: 3199049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3204707:1
position: 3204707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3199049-3204707:1:exon

CCNG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: CCNG1
product: cyclin G1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 1 long SRA read, 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 122 samples with support for all annotated introns
transcript id: XM_030283916.3
SIO_010081: CCNG1
subclass of: SO_0000673
so part of: CCNG1
location: join(3199049..3199220,3199732..3199995,3201017..3201270,3201861..3201939,3202020..3202118,3202362..3202556,3203170..3204707)
location: region:3199049-3204707:1
so has part: feature:3199049-3199220:1:exon
so has part: feature:3199732-3199995:1:exon
so has part: feature:3201017-3201270:1:exon
so has part: feature:3201861-3201939:1:exon
so has part: feature:3202020-3202118:1:exon
so has part: feature:3202362-3202556:1:exon
so has part: feature:3203170-3204707:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3199049-3199220:1:exon

position:3199220:1
position: 3199220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3199732-3199995:1:exon

position:3199732:1
position: 3199732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3199995:1
position: 3199995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3201017-3201270:1:exon

position:3201017:1
position: 3201017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3201270:1
position: 3201270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3201861-3201939:1:exon

position:3201861:1
position: 3201861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3201939:1
position: 3201939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3202020-3202118:1:exon

position:3202020:1
position: 3202020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3202118:1
position: 3202118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3202362-3202556:1:exon

position:3202362:1
position: 3202362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3202556:1
position: 3202556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3203170-3204707:1:exon

position:3203170:1
position: 3203170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CCNG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: CCNG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclin-G1
translation: MIDTPAGGGARDPALELPAMLEQELRAQPRAAGLRLLEAAHDNGLRMTARLRDFEVKDLLSLTQFFGFHTETFSLAVNFLDRFLSKMKVQPKHLGCVGLSCFYLAVKASEEERNVPLATDLIRISQYRFTVSDMMRMEKIILEKLCWKIKAVTTFQFLQLYHSFIHENLSCERRKYLNFERLETQLKACHCRIMFSKAKPSVLALSILALEIEEQKLLELTEALEFLQLHSKISNRELTFWKELVLKCLTEYSSSKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEATS
SIO_010081: CCNG1
subclass of: SO_0000673
so part of: CCNG1
location: join(3199732..3199995,3201017..3201270,3201861..3201939,3202020..3202118,3202362..3202553)
location: region:3199732-3202553:1
so has part: feature:3199732-3199995:1:exon
so has part: feature:3201017-3201270:1:exon
so has part: feature:3201861-3201939:1:exon
so has part: feature:3202020-3202118:1:exon
so has part: feature:3202362-3202553:1:exon

XP_030139776.3
type: Protein
SIO_000068: ncbiprotein

position:3202553:1
position: 3202553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3199732-3199995:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3201017-3201270:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3201861-3201939:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3202020-3202118:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3202362-3202553:1:exon

NUDCD2
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: NUDCD2
note: NudC domain containing 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: complement(3206223..3210549)
location: region:3206223-3210549:-1
so has part: feature:3206223-3210549:-1:exon
subclass of: SO_0000010

100190313
type: Gene
SIO_000068: ncbigene

position:3206223:-1
position: 3206223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3210549:-1
position: 3210549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3206223-3210549:-1:exon

NUDCD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: NUDCD2
product: NudC domain containing 2
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001245424.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 15 substitutions, 2 non-frameshifting indels compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001245424.1
SIO_010081: NUDCD2
subclass of: SO_0000673
so part of: NUDCD2
location: complement(join(3206223..3206559,3207491..3207642,3208836..3208884,3210194..3210549))
location: region:3206223-3210549:-1
so has part: feature:3210194-3210549:-1:exon
so has part: feature:3208836-3208884:-1:exon
so has part: feature:3207491-3207642:-1:exon
so has part: feature:3206223-3206559:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3210194-3210549:-1:exon

position:3210194:-1
position: 3210194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3208836-3208884:-1:exon

position:3208836:-1
position: 3208836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3208884:-1
position: 3208884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3207491-3207642:-1:exon

position:3207491:-1
position: 3207491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3207642:-1
position: 3207642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3206223-3206559:-1:exon

position:3206559:-1
position: 3206559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NUDCD2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 59729
gene: NUDCD2
inference: similar to AA sequence (same species):RefSeq:NP_001232353.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: nudC domain-containing protein 2
translation: MSAPFEERSGVVPCGTPWGRWYQTLEEVFIEVRVPPGTRAKDVRCSLRSRHISLAVGGQELLQGKLFDSTVTDEGTWTLEDRQLIRIVLMKTNRDAGNCWTSLLENEYAADPWVQDQMQRKLTLERFQRENPGFDFSGAEISGNYSKGGPDFSSLGK
SIO_010081: NUDCD2
subclass of: SO_0000673
so part of: NUDCD2
location: complement(join(3206476..3206559,3207491..3207642,3208836..3208884,3210194..3210382))
location: region:3206476-3210382:-1
so has part: feature:3210194-3210382:-1:exon
so has part: feature:3208836-3208884:-1:exon
so has part: feature:3207491-3207642:-1:exon
so has part: feature:3206476-3206559:-1:exon

NP_001232353.1
type: Protein
SIO_000068: ncbiprotein

position:3206476:-1
position: 3206476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3210382:-1
position: 3210382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3210194-3210382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3208836-3208884:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3207491-3207642:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3206476-3206559:-1:exon

HMMR
type: Gene
subclass of: SO_0000704
RO_0002162: 59729
gene: HMMR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3210646..3223445
location: region:3210646-3223445:1
so has part: feature:3210646-3223445:1:exon
subclass of: SO_0000010

100229538
type: Gene
SIO_000068: ncbigene

position:3210646:1
position: 3210646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3223445:1
position: 3223445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3210646-3223445:1:exon

HMMR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 59729
gene: HMMR
product: hyaluronan mediated motility receptor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 7 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_030283744.3
SIO_010081: HMMR
subclass of: SO_0000673
so part of: HMMR
location: join(3210646..3210781,3211239..3211337,3211910..3211986,3212792..3212872,3213559..3213747,3213976..3214062,3214344..3214444,3215503..3215577,3215711..3215889,3216683..3216831,3217116..3217330,3217922..3218038,3218853..3219011,3220168..3220320,3220430..3220529,3220784..3220960,3221479..3221641,3222251..3223445)
location: region:3210646-3223445:1
so has part: feature:3210646-3210781:1:exon
so has part: feature:3211239-3211337:1:exon
so has part: feature:3211910-3211986:1:exon
so has part: feature:3212792-3212872:1:exon
so has part: feature:3213559-3213747:1:exon
so has part: feature:3213976-3214062:1:exon
so has part: feature:3214344-3214444:1:exon
so has part: feature:3215503-3215577:1:exon
so has part: feature:3215711-3215889:1:exon
so has part: feature:3216683-3216831:1:exon
so has part: feature:3217116-3217330:1:exon
so has part: feature:3217922-3218038:1:exon
so has part: feature:3218853-3219011:1:exon
so has part: feature:3220168-3220320:1:exon
so has part: feature:3220430-3220529:1:exon
so has part: feature:3220784-3220960:1:exon
so has part: feature:3221479-3221641:1:exon
so has part: feature:3222251-3223445:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3210646-3210781:1:exon

position:3210781:1
position: 3210781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3211239-3211337:1:exon

position:3211239:1
position: 3211239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3211337:1
position: 3211337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3211910-3211986:1:exon

position:3211910:1
position: 3211910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition