Natronorubrum daqingense strain JX313 plasmid unnamed3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.
Complete genome sequence of Haloterrigena daqingensis type strain (JX313T)
Submitted (17-JAN-2017) Institute of Soil Fertilizer and Environment Resources, Heilongjiang Academy of Agriculture Sciences, Xuefu Road, Harbin, Heilongjiang 150086, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019330.1.\nBacteria and source DNA available from Heilongjiang Academy of\nAgriculture Sciences.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2016\nAssembly Method :: SOAPdenovo v. 2.04\nAssembly Name :: JX313T\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 251.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/02/2023 10:43:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,788\nCDSs (total) :: 3,734\nGenes (coding) :: 3,708\nCDSs (with protein) :: 3,708\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 11 of 26\nPseudo Genes (incomplete) :: 16 of 26\nPseudo Genes (internal stop) :: 7 of 26\nPseudo Genes (multiple problems) :: 7 of 26\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Haloterrigena daqingensis
COORDINATES: similar to AA sequence:RefSeq:WP_012946145.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006671473.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012618.2
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_013876074.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946172.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006168578.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091133.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142733.1
COORDINATES: similar to AA sequence:RefSeq:WP_006653624.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014177.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_007107936.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430235.1
COORDINATES: protein motif:HMM:NF024212.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008451607.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946224.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139910.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_013875991.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187031.1
COORDINATES: similar to AA sequence:RefSeq:WP_005580495.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665049.1
type IV pilin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006111369.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876083.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein