Natronorubrum daqingense strain JX313 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.
Complete genome sequence of Haloterrigena daqingensis type strain (JX313T)
Submitted (17-JAN-2017) Institute of Soil Fertilizer and Environment Resources, Heilongjiang Academy of Agriculture Sciences, Xuefu Road, Harbin, Heilongjiang 150086, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019329.1.\nBacteria and source DNA available from Heilongjiang Academy of\nAgriculture Sciences.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2016\nAssembly Method :: SOAPdenovo v. 2.04\nAssembly Name :: JX313T\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 251.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/02/2023 10:43:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,788\nCDSs (total) :: 3,734\nGenes (coding) :: 3,708\nCDSs (with protein) :: 3,708\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 11 of 26\nPseudo Genes (incomplete) :: 16 of 26\nPseudo Genes (internal stop) :: 7 of 26\nPseudo Genes (multiple problems) :: 7 of 26\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Haloterrigena daqingensis
COORDINATES: similar to AA sequence:RefSeq:WP_011222252.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF027245.2
bacterio-opsin activator domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013199655.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006088820.1
COORDINATES: similar to AA sequence:RefSeq:WP_007107429.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF016831.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890432.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006430279.1
COORDINATES: similar to AA sequence:RefSeq:WP_008419452.1
COORDINATES: protein motif:HMM:NF039733.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041381.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF013777.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014053361.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_014053359.1
orc1/cdc6 family replication initiation protein
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_015788966.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007258890.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007258889.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007142148.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258887.1
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007995319.1
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: similar to AA sequence:RefSeq:WP_007108550.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007142658.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004043159.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006429117.1
COORDINATES: similar to AA sequence:RefSeq:WP_004050464.1
COORDINATES: similar to AA sequence:RefSeq:WP_008422125.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008422123.1
COORDINATES: protein motif:HMM:NF024211.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945391.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004213779.1
COORDINATES: similar to AA sequence:RefSeq:WP_005579984.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013879999.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067144.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006430293.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876063.1
COORDINATES: protein motif:HMM:NF028516.2
COORDINATES: similar to AA sequence:RefSeq:WP_007139932.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430297.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139930.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430300.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430189.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139926.1
COORDINATES: similar to AA sequence:RefSeq:WP_010546856.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139924.1
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: protein motif:HMM:NF012376.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
FN3 domain-containing metallophosphoesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013876080.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946145.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037417.2
COORDINATES: similar to AA sequence:RefSeq:WP_007107592.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008015233.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652891.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863969.1
COORDINATES: similar to AA sequence:RefSeq:WP_015323362.1
COORDINATES: similar to AA sequence:RefSeq:WP_007703632.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
GO:0003677 - DNA binding [Evidence IEA]; GO:0097351 - toxin sequestering activity [Evidence IEA]
GO:0045927 - positive regulation of growth [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008319848.1
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: similar to AA sequence:RefSeq:WP_007107559.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762213.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011324411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216254.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004051350.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111267.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009376733.1
COORDINATES: similar to AA sequence:RefSeq:WP_013176301.1
COORDINATES: similar to AA sequence:RefSeq:WP_006524015.1
3-isopropylmalate dehydratase large subunit
COORDINATES: protein motif:HMM:NF024772.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018154474.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008320870.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181500.1
COORDINATES: similar to AA sequence:RefSeq:WP_005577877.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532732.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010901974.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009374642.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665461.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006827268.1
COORDINATES: protein motif:HMM:NF015898.2
COORDINATES: protein motif:HMM:NF002222.0
COORDINATES: similar to AA sequence:RefSeq:WP_006665524.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187075.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665501.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093051.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981361.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876008.1
COORDINATES: similar to AA sequence:RefSeq:WP_004053521.1
COORDINATES: similar to AA sequence:RefSeq:WP_005558189.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524486.1
COORDINATES: similar to AA sequence:RefSeq:WP_049929720.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111230.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006182303.1
COORDINATES: protein motif:HMM:NF012600.2
COORDINATES: similar to AA sequence:RefSeq:WP_015298971.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048232.1
COORDINATES: protein motif:HMM:NF012372.2
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013876055.1
COORDINATES: similar to AA sequence:RefSeq:WP_006187087.1
COORDINATES: protein motif:HMM:NF019407.2
type IV pilin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006665511.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274040.1
COORDINATES: similar to AA sequence:RefSeq:WP_006628456.1
COORDINATES: protein motif:HMM:NF019884.2
COORDINATES: similar to AA sequence:RefSeq:WP_019501777.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261228.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014218.2
COORDINATES: protein motif:HMM:NF039183.1
COORDINATES: protein motif:HMM:NF013209.2
COORDINATES: similar to AA sequence:RefSeq:WP_008011890.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946210.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216445.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276028.1
COORDINATES: similar to AA sequence:RefSeq:WP_008583763.1
COORDINATES: similar to AA sequence:RefSeq:WP_006166239.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041293.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]