Natronorubrum daqingense strain JX313 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.
Complete genome sequence of Haloterrigena daqingensis type strain (JX313T)
Submitted (17-JAN-2017) Institute of Soil Fertilizer and Environment Resources, Heilongjiang Academy of Agriculture Sciences, Xuefu Road, Harbin, Heilongjiang 150086, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019328.1.\nBacteria and source DNA available from Heilongjiang Academy of\nAgriculture Sciences.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2016\nAssembly Method :: SOAPdenovo v. 2.04\nAssembly Name :: JX313T\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 251.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/02/2023 10:43:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,788\nCDSs (total) :: 3,734\nGenes (coding) :: 3,708\nCDSs (with protein) :: 3,708\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 11 of 26\nPseudo Genes (incomplete) :: 16 of 26\nPseudo Genes (internal stop) :: 7 of 26\nPseudo Genes (multiple problems) :: 7 of 26\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Haloterrigena daqingensis
COORDINATES: similar to AA sequence:RefSeq:WP_006650388.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013880538.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008158761.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006672734.1
COORDINATES: similar to AA sequence:RefSeq:WP_005580755.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012946043.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007142944.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109246.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008895651.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091065.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091063.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091062.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006179581.1
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006091060.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261593.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091058.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946054.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179782.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946057.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895639.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091051.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006054163.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186157.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091049.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091047.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179771.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431234.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946069.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006179666.1
2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_007260620.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091038.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_006091036.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006187313.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005556912.1
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008012593.1
COORDINATES: similar to AA sequence:RefSeq:WP_007140776.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652841.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216892.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091030.1
COORDINATES: similar to AA sequence:RefSeq:WP_006652842.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006652840.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067360.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005557548.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576249.1
COORDINATES: similar to AA sequence:RefSeq:WP_005576251.1
COORDINATES: similar to AA sequence:RefSeq:WP_004266979.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111093.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945379.1
COORDINATES: similar to AA sequence:RefSeq:WP_007695020.1
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091014.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091012.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091009.1
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008163136.1
COORDINATES: similar to AA sequence:RefSeq:WP_006673112.1
GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091005.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067349.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261529.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946082.1
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261525.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895608.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007261522.1
peptidase M10A and M12B matrixin and adamalysin
COORDINATES: similar to AA sequence:RefSeq:WP_008895605.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008158851.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006090975.1
GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006090973.1
GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184412.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006648350.1
COORDINATES: similar to AA sequence:RefSeq:WP_015301696.1
COORDINATES: similar to AA sequence:RefSeq:WP_006672764.1
COORDINATES: protein motif:HMM:NF024927.2
COORDINATES: similar to AA sequence:RefSeq:WP_006431221.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067244.1
PGF-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014864157.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005558996.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946103.1
protein sorting system archaetidylserine decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_007257943.1
COORDINATES: similar to AA sequence:RefSeq:WP_015321864.1
COORDINATES: similar to AA sequence:RefSeq:WP_008425084.1
GO:0016740 - transferase activity [Evidence IEA]
GO:0006486 - protein glycosylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005558835.1
COORDINATES: similar to AA sequence:RefSeq:WP_008161739.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005558837.1
GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IEA]
UTP--glucose-1-phosphate uridylyltransferase AglF
COORDINATES: similar to AA sequence:RefSeq:WP_008425105.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322459.1
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015322458.1
COORDINATES: similar to AA sequence:RefSeq:WP_005558841.1
COORDINATES: similar to AA sequence:RefSeq:WP_005558842.1
COORDINATES: similar to AA sequence:RefSeq:WP_015322234.1
COORDINATES: similar to AA sequence:RefSeq:WP_006167166.1
COORDINATES: protein motif:HMM:NF025873.2
helix-hairpin-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006090939.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090937.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090935.1
COORDINATES: similar to AA sequence:RefSeq:WP_006827921.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184432.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007261491.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090917.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090913.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090911.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261483.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090905.1
COORDINATES: similar to AA sequence:RefSeq:WP_006166997.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090902.1
COORDINATES: similar to AA sequence:RefSeq:WP_006673517.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559094.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008158942.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090895.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090894.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090891.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090890.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179586.1
COORDINATES: similar to AA sequence:RefSeq:WP_015323259.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142904.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158955.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261676.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214459.1
COORDINATES: similar to AA sequence:RefSeq:WP_007259451.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261675.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214693.1
COORDINATES: similar to AA sequence:RefSeq:WP_014863628.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_007142911.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158967.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650335.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214703.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158973.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158975.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158979.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214707.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008895542.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184310.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298815.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_006432963.1
COORDINATES: similar to AA sequence:RefSeq:WP_006663988.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159046.1
COORDINATES: similar to AA sequence:RefSeq:WP_006674289.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159049.1
GO:0004765 - shikimate kinase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091113.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431313.1
COORDINATES: similar to AA sequence:RefSeq:WP_013879999.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053389.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012946009.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213533.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650739.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946011.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179534.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091105.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158827.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005577053.1
COORDINATES: similar to AA sequence:RefSeq:WP_012946015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945662.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006827388.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067172.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: protein motif:HMM:NF027245.2
COORDINATES: similar to AA sequence:RefSeq:WP_006091095.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091094.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091093.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004267813.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091091.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091090.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008158802.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_006431472.1
COORDINATES: similar to AA sequence:RefSeq:WP_006654834.1
monovalent cation/H+ antiporter subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_012946030.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091084.1
COORDINATES: similar to AA sequence:RefSeq:WP_007261574.1
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006650395.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012946036.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006222 - UMP biosynthetic process [Evidence IEA]
quinone-dependent dihydroorotate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008383890.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181534.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
translation elongation factor EF-1 subunit alpha