Plodia interpunctella isolate USDA-ARS_2022_Savannah chromosome Z, ilPloInte3.1, whole genome shotgun sequence.
type: Entry
definition: Plodia interpunctella isolate USDA-ARS_2022_Savannah chromosome Z, ilPloInte3.1, whole genome shotgun sequence.
sequence version: NC_071324.1
sequence date: 2023-02-22
sequence: sequence
division: CON
label: NC_071324.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA934418
dblink: SAMN23384295
keyword: WGS
keyword: RefSeq
source: Plodia interpunctella (Indianmeal moth)
organism: Plodia interpunctella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Pyralidae; Phycitinae; Plodia.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM050493.1.\nAssembly name: ilPloInte3.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the United States Department of\nAgriculture on 2023/01/09. The original whole-genome shotgun\nproject has the accession JAOPHU000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: United States Department of Agriculture\nAssembly Date :: AUG-2022\nAssembly Method :: HiFiAdapterFilt v. 2.0.0; HiFiASM v.\n 0.16.1; YaHS v. 1.1; Juicebox v. 1.11.08\nAssembly Name :: ilPloInte3.1\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 77x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_027563975.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/14/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 180911
topology: linear
so has quality: SO_0000987
location: 1..180911
location: region:1-180911:1
RO_0002162: 58824

NC_071324
type: RefSeq
SIO_000068: refseq

PRJNA934418
type: BioProject
SIO_000068: bioproject

SAMN23384295
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:180911:1
position: 180911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-180911:1:source
so part of: sequence
organism: Plodia interpunctella
mol type: genomic DNA
isolate: USDA-ARS_2022_Savannah
isolation source: Savannah Lab Colony
chromosome: Z
sex: male
tissue type: Whole Body
dev stage: 4th instar larva
country: USA: KS, Manhattan
collection date: 2019-10-25
collected by: USDA-ARS Stored Product Insect and Engineering Research Unit

58824
type: Taxonomy
SIO_000068: taxonomy

LOC128682695
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682695
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: <1..2411
location: region:1-2411:1
so has part: feature:1-2411:1:exon

128682695
type: Gene
SIO_000068: ncbigene

position:2411:1
position: 2411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-2411:1:exon

LOC128682695
type: Exon
subclass of: SO_0000147
RO_0002162: 58824
gene: LOC128682695
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC128682695
subclass of: SO_0000673
so part of: LOC128682695
location: <1..2411
location: region:1-2411:1
so has part: feature:1-2411:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-2411:1:exon

LOC128682675
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682675
note: small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 4477..6384
location: region:4477-6384:1
so has part: feature:4477-6384:1:exon
subclass of: SO_0000573

128682675
type: Gene
SIO_000068: ncbigene

position:4477:1
position: 4477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6384:1
position: 6384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4477-6384:1:exon

LOC128682675
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682675
product: small subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406156.1
SIO_010081: LOC128682675
subclass of: SO_0000673
so part of: LOC128682675
location: 4477..6384
location: region:4477-6384:1
so has part: feature:4477-6384:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4477-6384:1:exon

LOC128682669
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682669
note: 5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 6731..6887
location: region:6731-6887:1
so has part: feature:6731-6887:1:exon
subclass of: SO_0000573

128682669
type: Gene
SIO_000068: ncbigene

position:6731:1
position: 6731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6887:1
position: 6887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6731-6887:1:exon

LOC128682669
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682669
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406150.1
SIO_010081: LOC128682669
subclass of: SO_0000673
so part of: LOC128682669
location: 6731..6887
location: region:6731-6887:1
so has part: feature:6731-6887:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6731-6887:1:exon

LOC128682687
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682687
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 7366..11282
location: region:7366-11282:1
so has part: feature:7366-11282:1:exon
subclass of: SO_0000573

128682687
type: Gene
SIO_000068: ncbigene

position:7366:1
position: 7366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11282:1
position: 11282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7366-11282:1:exon

LOC128682687
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682687
product: large subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406167.1
SIO_010081: LOC128682687
subclass of: SO_0000673
so part of: LOC128682687
location: 7366..11282
location: region:7366-11282:1
so has part: feature:7366-11282:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7366-11282:1:exon

LOC128682676
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682676
note: small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 13631..15538
location: region:13631-15538:1
so has part: feature:13631-15538:1:exon
subclass of: SO_0000573

128682676
type: Gene
SIO_000068: ncbigene

position:13631:1
position: 13631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15538:1
position: 15538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13631-15538:1:exon

LOC128682676
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682676
product: small subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406157.1
SIO_010081: LOC128682676
subclass of: SO_0000673
so part of: LOC128682676
location: 13631..15538
location: region:13631-15538:1
so has part: feature:13631-15538:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13631-15538:1:exon

LOC128682680
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682680
note: 5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 15876..16032
location: region:15876-16032:1
so has part: feature:15876-16032:1:exon
subclass of: SO_0000573

128682680
type: Gene
SIO_000068: ncbigene

position:15876:1
position: 15876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16032:1
position: 16032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15876-16032:1:exon

LOC128682680
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682680
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406161.1
SIO_010081: LOC128682680
subclass of: SO_0000673
so part of: LOC128682680
location: 15876..16032
location: region:15876-16032:1
so has part: feature:15876-16032:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15876-16032:1:exon

LOC128682693
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682693
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 16511..20431
location: region:16511-20431:1
so has part: feature:16511-20431:1:exon
subclass of: SO_0000573

128682693
type: Gene
SIO_000068: ncbigene

position:16511:1
position: 16511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20431:1
position: 20431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16511-20431:1:exon

LOC128682693
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682693
product: large subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406173.1
SIO_010081: LOC128682693
subclass of: SO_0000673
so part of: LOC128682693
location: 16511..20431
location: region:16511-20431:1
so has part: feature:16511-20431:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16511-20431:1:exon

LOC128682677
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682677
note: small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 22878..24785
location: region:22878-24785:1
so has part: feature:22878-24785:1:exon
subclass of: SO_0000573

128682677
type: Gene
SIO_000068: ncbigene

position:22878:1
position: 22878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24785:1
position: 24785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22878-24785:1:exon

LOC128682677
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682677
product: small subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406158.1
SIO_010081: LOC128682677
subclass of: SO_0000673
so part of: LOC128682677
location: 22878..24785
location: region:22878-24785:1
so has part: feature:22878-24785:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22878-24785:1:exon

LOC128682692
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682692
note: 5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 25162..25318
location: region:25162-25318:1
so has part: feature:25162-25318:1:exon
subclass of: SO_0000573

128682692
type: Gene
SIO_000068: ncbigene

position:25162:1
position: 25162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25318:1
position: 25318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25162-25318:1:exon

LOC128682692
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682692
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406172.1
SIO_010081: LOC128682692
subclass of: SO_0000673
so part of: LOC128682692
location: 25162..25318
location: region:25162-25318:1
so has part: feature:25162-25318:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25162-25318:1:exon

LOC128682690
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682690
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 25797..29718
location: region:25797-29718:1
so has part: feature:25797-29718:1:exon
subclass of: SO_0000573

128682690
type: Gene
SIO_000068: ncbigene

position:25797:1
position: 25797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29718:1
position: 29718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25797-29718:1:exon

LOC128682690
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682690
product: large subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406170.1
SIO_010081: LOC128682690
subclass of: SO_0000673
so part of: LOC128682690
location: 25797..29718
location: region:25797-29718:1
so has part: feature:25797-29718:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25797-29718:1:exon

LOC128682678
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682678
note: small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 32168..34075
location: region:32168-34075:1
so has part: feature:32168-34075:1:exon
subclass of: SO_0000573

128682678
type: Gene
SIO_000068: ncbigene

position:32168:1
position: 32168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34075:1
position: 34075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32168-34075:1:exon

LOC128682678
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682678
product: small subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406159.1
SIO_010081: LOC128682678
subclass of: SO_0000673
so part of: LOC128682678
location: 32168..34075
location: region:32168-34075:1
so has part: feature:32168-34075:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32168-34075:1:exon

LOC128682696
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682696
note: 5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 34421..34577
location: region:34421-34577:1
so has part: feature:34421-34577:1:exon
subclass of: SO_0000573

128682696
type: Gene
SIO_000068: ncbigene

position:34421:1
position: 34421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34577:1
position: 34577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34421-34577:1:exon

LOC128682696
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682696
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406175.1
SIO_010081: LOC128682696
subclass of: SO_0000673
so part of: LOC128682696
location: 34421..34577
location: region:34421-34577:1
so has part: feature:34421-34577:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34421-34577:1:exon

LOC128682684
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682684
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 35056..38972
location: region:35056-38972:1
so has part: feature:35056-38972:1:exon
subclass of: SO_0000573

128682684
type: Gene
SIO_000068: ncbigene

position:35056:1
position: 35056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38972:1
position: 38972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35056-38972:1:exon

LOC128682684
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682684
product: large subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406165.1
SIO_010081: LOC128682684
subclass of: SO_0000673
so part of: LOC128682684
location: 35056..38972
location: region:35056-38972:1
so has part: feature:35056-38972:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35056-38972:1:exon

LOC128682674
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682674
note: small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 41012..42919
location: region:41012-42919:1
so has part: feature:41012-42919:1:exon
subclass of: SO_0000573

128682674
type: Gene
SIO_000068: ncbigene

position:41012:1
position: 41012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42919:1
position: 42919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41012-42919:1:exon

LOC128682674
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682674
product: small subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406155.1
SIO_010081: LOC128682674
subclass of: SO_0000673
so part of: LOC128682674
location: 41012..42919
location: region:41012-42919:1
so has part: feature:41012-42919:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41012-42919:1:exon

LOC128682697
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682697
note: 5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 43273..43429
location: region:43273-43429:1
so has part: feature:43273-43429:1:exon
subclass of: SO_0000573

128682697
type: Gene
SIO_000068: ncbigene

position:43273:1
position: 43273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43429:1
position: 43429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43273-43429:1:exon

LOC128682697
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682697
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406176.1
SIO_010081: LOC128682697
subclass of: SO_0000673
so part of: LOC128682697
location: 43273..43429
location: region:43273-43429:1
so has part: feature:43273-43429:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43273-43429:1:exon

LOC128682686
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682686
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 43908..47824
location: region:43908-47824:1
so has part: feature:43908-47824:1:exon
subclass of: SO_0000573

128682686
type: Gene
SIO_000068: ncbigene

position:43908:1
position: 43908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47824:1
position: 47824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43908-47824:1:exon

LOC128682686
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682686
product: large subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406166.1
SIO_010081: LOC128682686
subclass of: SO_0000673
so part of: LOC128682686
location: 43908..47824
location: region:43908-47824:1
so has part: feature:43908-47824:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43908-47824:1:exon

LOC128682679
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682679
note: small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 49909..51816
location: region:49909-51816:1
so has part: feature:49909-51816:1:exon
subclass of: SO_0000573

128682679
type: Gene
SIO_000068: ncbigene

position:49909:1
position: 49909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51816:1
position: 51816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49909-51816:1:exon

LOC128682679
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682679
product: small subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406160.1
SIO_010081: LOC128682679
subclass of: SO_0000673
so part of: LOC128682679
location: 49909..51816
location: region:49909-51816:1
so has part: feature:49909-51816:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49909-51816:1:exon

LOC128682670
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682670
note: 5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 52170..52326
location: region:52170-52326:1
so has part: feature:52170-52326:1:exon
subclass of: SO_0000573

128682670
type: Gene
SIO_000068: ncbigene

position:52170:1
position: 52170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52326:1
position: 52326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52170-52326:1:exon

LOC128682670
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682670
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406151.1
SIO_010081: LOC128682670
subclass of: SO_0000673
so part of: LOC128682670
location: 52170..52326
location: region:52170-52326:1
so has part: feature:52170-52326:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:52170-52326:1:exon

LOC128682694
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682694
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 52805..56718
location: region:52805-56718:1
so has part: feature:52805-56718:1:exon
subclass of: SO_0000573

128682694
type: Gene
SIO_000068: ncbigene

position:52805:1
position: 52805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56718:1
position: 56718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52805-56718:1:exon

LOC128682694
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682694
product: large subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406174.1
SIO_010081: LOC128682694
subclass of: SO_0000673
so part of: LOC128682694
location: 52805..56718
location: region:52805-56718:1
so has part: feature:52805-56718:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:52805-56718:1:exon

LOC128682681
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682681
note: small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 59197..61104
location: region:59197-61104:1
so has part: feature:59197-61104:1:exon
subclass of: SO_0000573

128682681
type: Gene
SIO_000068: ncbigene

position:59197:1
position: 59197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61104:1
position: 61104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59197-61104:1:exon

LOC128682681
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682681
product: small subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406162.1
SIO_010081: LOC128682681
subclass of: SO_0000673
so part of: LOC128682681
location: 59197..61104
location: region:59197-61104:1
so has part: feature:59197-61104:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59197-61104:1:exon

LOC128682671
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682671
note: 5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 61453..61609
location: region:61453-61609:1
so has part: feature:61453-61609:1:exon
subclass of: SO_0000573

128682671
type: Gene
SIO_000068: ncbigene

position:61453:1
position: 61453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61609:1
position: 61609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61453-61609:1:exon

LOC128682671
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682671
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406152.1
SIO_010081: LOC128682671
subclass of: SO_0000673
so part of: LOC128682671
location: 61453..61609
location: region:61453-61609:1
so has part: feature:61453-61609:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:61453-61609:1:exon

LOC128682691
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682691
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 62088..66002
location: region:62088-66002:1
so has part: feature:62088-66002:1:exon
subclass of: SO_0000573

128682691
type: Gene
SIO_000068: ncbigene

position:62088:1
position: 62088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66002:1
position: 66002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62088-66002:1:exon

LOC128682691
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682691
product: large subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406171.1
SIO_010081: LOC128682691
subclass of: SO_0000673
so part of: LOC128682691
location: 62088..66002
location: region:62088-66002:1
so has part: feature:62088-66002:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:62088-66002:1:exon

LOC128682682
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682682
note: small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 68452..70359
location: region:68452-70359:1
so has part: feature:68452-70359:1:exon
subclass of: SO_0000573

128682682
type: Gene
SIO_000068: ncbigene

position:68452:1
position: 68452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70359:1
position: 70359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68452-70359:1:exon

LOC128682682
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682682
product: small subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406163.1
SIO_010081: LOC128682682
subclass of: SO_0000673
so part of: LOC128682682
location: 68452..70359
location: region:68452-70359:1
so has part: feature:68452-70359:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68452-70359:1:exon

LOC128682672
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682672
note: 5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 70713..70869
location: region:70713-70869:1
so has part: feature:70713-70869:1:exon
subclass of: SO_0000573

128682672
type: Gene
SIO_000068: ncbigene

position:70713:1
position: 70713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70869:1
position: 70869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70713-70869:1:exon

LOC128682672
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682672
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406153.1
SIO_010081: LOC128682672
subclass of: SO_0000673
so part of: LOC128682672
location: 70713..70869
location: region:70713-70869:1
so has part: feature:70713-70869:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:70713-70869:1:exon

LOC128682689
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682689
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 71342..75250
location: region:71342-75250:1
so has part: feature:71342-75250:1:exon
subclass of: SO_0000573

128682689
type: Gene
SIO_000068: ncbigene

position:71342:1
position: 71342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75250:1
position: 75250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71342-75250:1:exon

LOC128682689
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682689
product: large subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406169.1
SIO_010081: LOC128682689
subclass of: SO_0000673
so part of: LOC128682689
location: 71342..75250
location: region:71342-75250:1
so has part: feature:71342-75250:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:71342-75250:1:exon

LOC128682683
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682683
note: small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 77707..79614
location: region:77707-79614:1
so has part: feature:77707-79614:1:exon
subclass of: SO_0000573

128682683
type: Gene
SIO_000068: ncbigene

position:77707:1
position: 77707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79614:1
position: 79614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77707-79614:1:exon

LOC128682683
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682683
product: small subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406164.1
SIO_010081: LOC128682683
subclass of: SO_0000673
so part of: LOC128682683
location: 77707..79614
location: region:77707-79614:1
so has part: feature:77707-79614:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77707-79614:1:exon

LOC128682673
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682673
note: 5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 79968..80124
location: region:79968-80124:1
so has part: feature:79968-80124:1:exon
subclass of: SO_0000573

128682673
type: Gene
SIO_000068: ncbigene

position:79968:1
position: 79968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80124:1
position: 80124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79968-80124:1:exon

LOC128682673
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682673
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406154.1
SIO_010081: LOC128682673
subclass of: SO_0000673
so part of: LOC128682673
location: 79968..80124
location: region:79968-80124:1
so has part: feature:79968-80124:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:79968-80124:1:exon

LOC128682688
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682688
note: large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 80597..84513
location: region:80597-84513:1
so has part: feature:80597-84513:1:exon
subclass of: SO_0000573

128682688
type: Gene
SIO_000068: ncbigene

position:80597:1
position: 80597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84513:1
position: 84513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80597-84513:1:exon

LOC128682688
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 58824
gene: LOC128682688
product: large subunit ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF02543
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_008406168.1
SIO_010081: LOC128682688
subclass of: SO_0000673
so part of: LOC128682688
location: 80597..84513
location: region:80597-84513:1
so has part: feature:80597-84513:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:80597-84513:1:exon

LOC128682668
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682668
note: uncharacterized LOC128682668; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 88913..>89428
location: region:88913-89428:1
so has part: feature:88913-89428:1:exon
subclass of: SO_0000010

128682668
type: Gene
SIO_000068: ncbigene

position:88913:1
position: 88913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89428:1
position: 89428
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88913-89428:1:exon

LOC128682668
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 58824
gene: LOC128682668
product: uncharacterized LOC128682668
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_053767542.1
SIO_010081: LOC128682668
subclass of: SO_0000673
so part of: LOC128682668
location: 88913..>89428
location: region:88913-89428:1
so has part: feature:88913-89428:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:88913-89428:1:exon

LOC128682668
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 58824
gene: LOC128682668
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128682668
translation: MGVTFLQANLNHSAKAQDLLLQSMAEWDLDVAVVAEPYAVPSLPHWAGDLDGLVAIVARPGAAPPLAIKKRGNGFVVAVRGEYAIIGVYFSPNRDLPALERFLDALGPEIRRLAPLKVFVAGDFNAKSTAWGNPATEPKGRKVEEWALAAGLSLLNRGTAHTCVRRTGGSVV
SIO_010081: LOC128682668
subclass of: SO_0000673
so part of: LOC128682668
location: 88913..>89428
location: region:88913-89428:1
so has part: feature:88913-89428:1:exon

XP_053623517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:88913-89428:1:exon

LOC128682661
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682661
note: uncharacterized LOC128682661; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <90940..97661
location: region:90940-97661:1
so has part: feature:90940-97661:1:exon
subclass of: SO_0000010

128682661
type: Gene
SIO_000068: ncbigene

position:90940:1
position: 90940
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:97661:1
position: 97661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90940-97661:1:exon

LOC128682661
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 58824
gene: LOC128682661
product: uncharacterized LOC128682661
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_053767532.1
SIO_010081: LOC128682661
subclass of: SO_0000673
so part of: LOC128682661
location: join(<90940..91387,97443..97661)
location: region:90940-97661:1
so has part: feature:90940-91387:1:exon
so has part: feature:97443-97661:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90940-91387:1:exon

position:91387:1
position: 91387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:97443-97661:1:exon

position:97443:1
position: 97443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128682661
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 58824
gene: LOC128682661
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:90955..90957,aa:OTHER)
product: LOW QUALITY PROTEIN: uncharacterized protein LOC128682661
translation: GCEFRXGARLAETGLALLVGRIERLGLRVRLDKTEVLLFRGARTRGPPPGARLQVGHEELRVSAQMKYLGLILDGRWSFVPHFRELGQRIIRTAASLGRLLPNLGGPSDAVRKLYSGVCRSMAMYGAPVWVDALAAENKRLLRQAQKVITVSSRCGLRGVQVLDVDLRRATRYPKYWGRGCCAIKSQRREEENLIKNNPNPKVWRADGMNGGGGTPSRALT
SIO_010081: LOC128682661
subclass of: SO_0000673
so part of: LOC128682661
location: join(<90940..91387,97443..97661)
location: region:90940-97661:1
so has part: feature:90940-91387:1:exon
so has part: feature:97443-97661:1:exon

XP_053623507.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:90940-91387:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:97443-97661:1:exon

LOC128682662
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682662
note: uncharacterized LOC128682662; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 97658..99649
location: region:97658-99649:1
so has part: feature:97658-99649:1:exon
subclass of: SO_0000010

128682662
type: Gene
SIO_000068: ncbigene

position:97658:1
position: 97658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99649:1
position: 99649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97658-99649:1:exon

LOC128682662
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 58824
gene: LOC128682662
product: uncharacterized LOC128682662
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_053767534.1
SIO_010081: LOC128682662
subclass of: SO_0000673
so part of: LOC128682662
location: 97658..99649
location: region:97658-99649:1
so has part: feature:97658-99649:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:97658-99649:1:exon

LOC128682662
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 58824
gene: LOC128682662
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128682662
translation: MSVGGVRDLTLIKKGKYEMASDKNYLPQEGTSFAGESLSASSDVDSLTVSGGGINRQRDASPSQQSVQTDSDNDSDSSLPEALLNEENRGGRGSAPLKRKAPEVSGAMERGPKINTAIRGRPRTPGMRRTQGATEGRKRATVVDEHLGVVRAAANRVLEEADKSGNLKGTVWRAMKESCQQILEAAEKIEAQQVESEAVRILTADNKRMREQLELLQKETKALRTAYSEKAAAPLTSGTGITRTEIQEVLADFKESLERDLFLRLGGMVTDRLKEAEKRGILAPEPIMRPPLTTDKRPNEVERQNHEEERPTTLMSSARPGPAARNTTRRRPQPQEEEPQPGPSQTTEAPLTNQEKEGWATVVKKKKGKRGKGKGHGKNSPPDKLKPTQAQVRTPGVSAKPPPKKMFTPPKSSAVVVTLRPESKMDYKSVMARVTTLKLPSIGVDHVAVRRTATGARIIEIPGAHSAVSADTLAEKLREMVGDEAQISRPYKTAQIKIYGFDESVTQESLKEAAAEAGNCPPGQIRVGAIRTAPDQTGASILTCPVAAANNLIKAGRLLVGWSAAKIKGLEALPMRCFRCMGLGHTRALCPSPVDRSNVCHRCGQTGHMTVECSAKEPWCAVCHAAKLPAGHVMGGKACNPPRTRGKTALATREVSEGRLMEH
SIO_010081: LOC128682662
subclass of: SO_0000673
so part of: LOC128682662
location: 97658..99649
location: region:97658-99649:1
so has part: feature:97658-99649:1:exon

XP_053623509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:97658-99649:1:exon

LOC128682663
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682663
note: uncharacterized LOC128682663; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 103626..105809
location: region:103626-105809:1
so has part: feature:103626-105809:1:exon
subclass of: SO_0000010

128682663
type: Gene
SIO_000068: ncbigene

position:103626:1
position: 103626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105809:1
position: 105809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103626-105809:1:exon

LOC128682663
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 58824
gene: LOC128682663
product: uncharacterized LOC128682663
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_053767535.1
SIO_010081: LOC128682663
subclass of: SO_0000673
so part of: LOC128682663
location: 103626..105809
location: region:103626-105809:1
so has part: feature:103626-105809:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:103626-105809:1:exon

LOC128682663
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 58824
gene: LOC128682663
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128682663
translation: MQVVNKENLPQGGTGRTAVGESTPVSNDTGCPSYSGGGNLRLAPSDAIVDAVVGDDVVGDEVVGDEVVGKNAGDVVAQVSDSEMSVKSASSGCGQSRFFRKRRNTESPELSSATDEDNPPQARAQRGKRGRGRPPTTGECIGLGKAREALQATRRAEFLKVRIGEEDRQLAEAAKKVAVRSERAASRASTRSEAEFEPEDLTTGSIEERLNNSVAAIRAVGKMSKGLKGTAQKTLKDAAASIEDLAHELMERCTSSETRRLQAENARLKQEMADLRQELDEIRTEVYKSKRSAQPETEAPRDTPALEKQLTSLLKEELGRFREEVLTKVNFLEGKVLRPTLASDRGSKGRAPTMATFAEKTAARPTLAETPVEQVSQAVDIPPSQPSTSTAPAKTKKAKRKKAKSSKTAPDAAAAAAPQQAEEGAWQTVGQKKSQKKATRKEAQKKKRQEARLRPPRSTAVVLTLQPHASQNGVTYEEVLGRAKSQVDTVSLGIEGMRCKVTATGARLLQVPGSSSGPLADALADKLRQALNPEEVKVSRPVKRVDLRISGLDDSVTREELTAALAKAGACSELDLKVGEIRRAPRGMGTSIVACPVTVAKKLEDGRRLLVGWVSASVKLLKQRPMRCYRCITGEHVATQCNSAVDCSGLCFRCGKRGHEARTCSAAPHCPVCAEANKPADHAIGSKLCKAANKKTGKTPKKAPASRPKIPPTESSQGVEPFEMECP
SIO_010081: LOC128682663
subclass of: SO_0000673
so part of: LOC128682663
location: 103626..105809
location: region:103626-105809:1
so has part: feature:103626-105809:1:exon

XP_053623510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:103626-105809:1:exon

LOC128682664
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682664
note: uncharacterized LOC128682664; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 122679..124694
location: region:122679-124694:1
so has part: feature:122679-124694:1:exon
subclass of: SO_0000010

128682664
type: Gene
SIO_000068: ncbigene

position:122679:1
position: 122679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124694:1
position: 124694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122679-124694:1:exon

LOC128682664
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 58824
gene: LOC128682664
product: uncharacterized LOC128682664
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_053767536.1
SIO_010081: LOC128682664
subclass of: SO_0000673
so part of: LOC128682664
location: 122679..124694
location: region:122679-124694:1
so has part: feature:122679-124694:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:122679-124694:1:exon

LOC128682664
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 58824
gene: LOC128682664
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128682664
translation: MECSGSEHSAGEETDGSGLAVGQKRMGSLMGSAGSITSLSESVLGNKRLYSEVATGSGTDTEVGVPRAQSVAKRGKARGASHLTRARAEARRSQEEDAEASFSASLGARAFRRGGPPSGGDDDVVVAPIDARDFGAMGADGLMATAVERLGIITSLVGKTAALKGGFNSKIMRASSDIRDIVDTLVARSESDEVRRLKADNGRLQREVAIMKAEVAALRRGFEEARREAAQAARTVQRQAAPVEDELEQRMARLIDGRLAALGLAGCPRSATRPPLAGDNSEVARAARTAIDRASGLGPAPRLEQPVVELEVRAPARPASERRGCKGVGAGGVTEWGPFGPSTSTAVVDECPELPWVEVRGRRGKGKGVGKKSQPKPAERPAAAPTKATATAPKAPPRAAPARAAKLSAPSSSAVILKLQPEAAQKGATYSSALLKAEQAVSLEGLGIGSLRIRPSATGARLIEVSGPSNSDKADALASALKAALSGVADVSRPVKTADFRVTGLNDAATAQRIKAAVAQAGSCTEDQVWVGEIRSDWRGSGSALMRCPVTTAKKLIEAGSLTVGWSRVQLRHLEARPMHCYKCMGKGHTASLCPSQTDRSRLCYRCGEAGHLSASCTAEPRCAVCRDAGKPAGHVMGGRACNPPPIRGKGPSPPPREGRQGEAPVGQMEE
SIO_010081: LOC128682664
subclass of: SO_0000673
so part of: LOC128682664
location: 122679..124694
location: region:122679-124694:1
so has part: feature:122679-124694:1:exon

XP_053623511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:122679-124694:1:exon

LOC128682665
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682665
note: uncharacterized LOC128682665; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 124694..>127156
location: region:124694-127156:1
so has part: feature:124694-127156:1:exon
subclass of: SO_0000010

128682665
type: Gene
SIO_000068: ncbigene

position:127156:1
position: 127156
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124694-127156:1:exon

LOC128682665
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 58824
gene: LOC128682665
product: uncharacterized LOC128682665
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_053767537.1
SIO_010081: LOC128682665
subclass of: SO_0000673
so part of: LOC128682665
location: join(124694..124927,126721..>127156)
location: region:124694-127156:1
so has part: feature:124694-124927:1:exon
so has part: feature:126721-127156:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:124694-124927:1:exon

position:124927:1
position: 124927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:126721-127156:1:exon

position:126721:1
position: 126721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128682665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 58824
gene: LOC128682665
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:126736..126738,aa:OTHER)
product: LOW QUALITY PROTEIN: uncharacterized protein LOC128682665
translation: MGVTFLQANLNHSARAQDLLLQSMAEWDLDVAVVAEPYAVPSLPHWAGDLDDLVAIVARPGAAPPLAIKKRGNGFVVAGCEFRXGARLAETGLALLVGRIERLGLRVRLDKTEVLLFRGARARGPPPGARLQVGHEELRVSAQMKYLGLILDGRWSFVPHFRELGQRIIRTAASLGRLLPNLGGPSDAVRKLYSGVCRSMAMYGAPVWVDALAAENKRLLRQA
SIO_010081: LOC128682665
subclass of: SO_0000673
so part of: LOC128682665
location: join(124694..124927,126721..>127156)
location: region:124694-127156:1
so has part: feature:124694-124927:1:exon
so has part: feature:126721-127156:1:exon

XP_053623512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:124694-124927:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126721-127156:1:exon

LOC128682666
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682666
note: uncharacterized LOC128682666; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 153355..155370
location: region:153355-155370:1
so has part: feature:153355-155370:1:exon
subclass of: SO_0000010

128682666
type: Gene
SIO_000068: ncbigene

position:153355:1
position: 153355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:155370:1
position: 155370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153355-155370:1:exon

LOC128682666
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 58824
gene: LOC128682666
product: uncharacterized LOC128682666
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_053767539.1
SIO_010081: LOC128682666
subclass of: SO_0000673
so part of: LOC128682666
location: 153355..155370
location: region:153355-155370:1
so has part: feature:153355-155370:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:153355-155370:1:exon

LOC128682666
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 58824
gene: LOC128682666
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128682666
translation: MECSGSEHSAGEETDGSGLAVGQKRMGSLMGSAGSITSLSESVLGNKRLYSEVATGSGTDTEVGVPRAQSVAKRGKARGASHLTRARAEARRSQEEDAEASFSASLGARAFRRGGPPSGGDDDVVVAPIDARDFGAMGADGLMATAVERLGIITSLVGKTAALKGGFNSKIMRASSDIRDIVDTLVARSESDEVRRLKADNGRLQREVAIMKAEVAALRRGFEEARREAAQAARTVQRQAAPVEDELEQRMARLIDGRLAALGLAGCPRSATRPPLAGDNSEVARAARTAIDRASGLGPAPRLEQPVVELEVRAPARPASERRGCKGVGAGGVTEWGPFGPSTSTAVVDECPELPWVEVRGRRGKGKGVGKKSQPKPAERPAAAPTKATATAPKAPPRAAPARAAKLSAPSSSAVILKLQPEAAQKGATYSSALLKAEQAVSLEGLGIGSLRIRPSATGARLIEVSGPSNSDKADALASALKAALSGVADVSRPVKTADFRVTGLNDAATAQRIKAAVAQAGSCTEDQVWVGEIRSDWRGSGSALMRCPVTTAKKLIEAGSLTVGWSRVQLRHLEARPMHCYKCMGKGHTASLCPSQTDRSRLCYRCGEAGHLSASCTAEPRCAVCRDAGKPAGHVMGGRACNPPPIRGKGPSPPPREGRQGEAPVGQMEE
SIO_010081: LOC128682666
subclass of: SO_0000673
so part of: LOC128682666
location: 153355..155370
location: region:153355-155370:1
so has part: feature:153355-155370:1:exon

XP_053623514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:153355-155370:1:exon

LOC128682667
type: Gene
subclass of: SO_0000704
RO_0002162: 58824
gene: LOC128682667
note: uncharacterized LOC128682667; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(165908..167554)
location: region:165908-167554:-1
so has part: feature:165908-167554:-1:exon
subclass of: SO_0000010

128682667
type: Gene
SIO_000068: ncbigene

position:165908:-1
position: 165908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167554:-1
position: 167554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165908-167554:-1:exon

LOC128682667
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 58824
gene: LOC128682667
product: uncharacterized LOC128682667
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_053767540.1
SIO_010081: LOC128682667
subclass of: SO_0000673
so part of: LOC128682667
location: complement(165908..167554)
location: region:165908-167554:-1
so has part: feature:165908-167554:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:165908-167554:-1:exon

LOC128682667
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 58824
gene: LOC128682667
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC128682667
translation: MLLPDNAHIQAFADDVLLIVEGKSREEVERTTNTCLREIYSWGDRVKLRFAPEKTQCISFTTQTLTAEIEMNNVRIPLTTQIKLLGVIIDNKLNFIQHSKYIIGKATKIFKNLCKFVRPTWGIHPENVECIYRQVITPIITYAAGIWGTATRFCSVRRALRSFQRAFAIRAIRGFHTISAVAADALARFPPLHLVVEEARETHLIKQSGTLGSLPEDIGLYRRVGIRDLLHPAKRVTIDYDTATTQEETDYLMNPEAPNVFTDGSKHENGDTGSAFVVIMEGLPGGSVTRKFKLCRTSTVFMAELYAIAQALEWLRARNHSLAKIFTDSLSALKAIQDRSNTDHLVNRIHRDLFLLRSRNQMVDFVWTKAHVGIVGNEIADAAAKAAASKKTASEVNFFPLSHAKRLLKAKTLQAWQAEYQSTTQGATTKTFFPLICHIPSALSAFKISFSLTQILTGHGFHKAYLSKFKIIDDDKCPCDGTTAQDIPHLLRECPIFGKTRHDYVTACLRNKIDEFDLIQTSSKEETTTTFLKLVDNIVYSLKTINGT
SIO_010081: LOC128682667
subclass of: SO_0000673
so part of: LOC128682667
location: complement(165908..167554)
location: region:165908-167554:-1
so has part: feature:165908-167554:-1:exon

XP_053623515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:165908-167554:-1:exon