Plodia interpunctella isolate USDA-ARS_2022_Savannah chromosome Z, ilPloInte3.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Pyralidae; Phycitinae; Plodia.
REFSEQ INFORMATION: The reference sequence is identical to\nCM050493.1.\nAssembly name: ilPloInte3.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the United States Department of\nAgriculture on 2023/01/09. The original whole-genome shotgun\nproject has the accession JAOPHU000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: United States Department of Agriculture\nAssembly Date :: AUG-2022\nAssembly Method :: HiFiAdapterFilt v. 2.0.0; HiFiASM v.\n 0.16.1; YaHS v. 1.1; Juicebox v. 1.11.08\nAssembly Name :: ilPloInte3.1\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 77x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_027563975.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/14/2023\n##Genome-Annotation-Data-END##
USDA-ARS Stored Product Insect and Engineering Research Unit
large subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF02543
Derived by automated computational analysis using gene prediction method: cmsearch.
small subunit ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF01960
5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00002
uncharacterized LOC128682668; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128682661; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128682661
uncharacterized LOC128682662; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128682663; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128682664; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128682665; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128682665
uncharacterized LOC128682666; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128682667; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins