Plasmodium reichenowi strain SY57 chromosome 14, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (10-FEB-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003855.\nAssembly created using Velvet Columbus followed by PAGIT and\nGapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; PAGIT v. 1; GapFiller v.\n 1.11\nGenome Coverage :: 200x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
Plasmodium exported protein, unknown function
conserved Plasmodium protein, unknown function
gap found within coding sequence; ortholog of PRCDC_1401300
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1401300A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1401300B; gap found within coding sequence
26S proteasome regulatory subunit RPN6, putative
U1 small nuclear ribonucleoprotein C, putative
ubiquitin-40S ribosomal protein S27a, putative
gap found within coding sequence; ortholog of PRCDC_1402000
U2 snRNP-associated SURP motif-containing protein, putative
part of same gene as PRSY57_1402000A; gap found within coding sequence
part of same gene as PRSY57_1402000B; gap found within coding sequence
gap found within coding sequence; ortholog of PRCDC_1402300
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1402300B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1402300A; gap found within coding sequence
gap found within coding sequence; ortholog of PRCDC_1402700
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1402700B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1402700A; gap found within coding sequence
Contains in-frame UGA selenocysteine codon
translocation associated membrane protein, putative
male-inherited sporulation factor important for transmission
DNA-directed RNA polymerase II subunit RPB4, putative
secreted ookinete adhesive protein, putative
mitochondrial ribosomal protein L16 precursor, putative
encoded by transcript variant 1; alternatively spliced
transcript variant 1; alternatively spliced
encoded by transcript variant 2; alternatively spliced
transcript variant 2; alternatively spliced
encoded by transcript variant 3; alternatively spliced
transcript variant 3; alternatively spliced
trafficking protein particle complex subunit 1, putative
COBW domain-containing protein 1, putative
large subunit rRNA processing protein, putative
glycerophosphodiester phosphodiesterase, putative
vacuolar protein sorting-associated protein 29, putative
gap found within coding sequence; ortholog of PRCDC_1406100
glideosome associated protein with multiple membrane spans 3
part of same gene as PRSY57_1406100A; gap found within coding sequence
part of same gene as PRSY57_1406100B; gap found within coding sequence
tRNA m2G10 methyltransferase subunit, putative
transcription factor with AP2 domain(s), putative
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
DNA damage-inducible protein 1, putative
conserved Plasmodium membrane protein, unknown function
cytidine diphosphate-diacylglycerol synthase
tetratricopeptide repeat family protein, putative
eukaryotic translation initiation factor 2 gamma subunit, putative
ribosome maturation protein SBDS, putative
conserved Plasmodium membrane protein, unknown function; transcript variant 1; alternatively spliced
conserved Plasmodium membrane protein, unknown function; transcript variant 2; alternatively spliced
gap found within coding sequence; ortholog of PRCDC_1411700
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1411700A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1411700B; gap found within coding sequence
glycylpeptide N-tetradecanoyltransferase, putative
gap found within coding sequence; ortholog of PRCDC_1412200
part of same gene as PRSY57_1412200B.2, PRSY57_1412200B.1; gap found within coding sequence
part of same gene as PRSY57_1412200A, PRSY57_1412200B.2; transcript variant 1; alternatively spliced; gap found within coding sequence
part of same gene as PRSY57_1412200A, PRSY57_1412200B.1; transcript variant 2; alternatively spliced; gap found within coding sequence
hypothetical protein; ortholog of PRCDC_1413000; may be nonfunctional due to frameshift
26S proteasome regulatory subunit RPN13, putative
serine/threonine protein phosphatase PP1, putative
atypical protein kinase, ABC-1 family, putative
ubiquitin carboxyl-terminal hydrolase, putative
small nuclear ribonucleoprotein-associated protein B, putative
DNA-directed RNA polymerase I/III subunit, putative
small subunit rRNA dimethylase, putative
root hair defective 3 GTP-binding protein-like protein
cyclic nucleotide-binding protein, putative
H/ACA ribonucleoprotein complex subunit 4, putative
DNA replication licensing factor MCM2, putative
ubiquitin fusion degradation protein UFD1, putative
DEAD/DEAH box ATP-dependent RNA helicase, putative
gap found within coding sequence; ortholog of PRCDC_1418700
conserved Plasmodium membrane protein, unknown function; part of same gene as PRSY57_1418700A; gap found within coding sequence
conserved Plasmodium membrane protein, unknown function; part of same gene as PRSY57_1418700B; gap found within coding sequence
mannose-1-phosphate guanyltransferase, putative
similar to DNA sequence:PlasmoDB:PRCDC_1420450
gap found within coding sequence; ortholog of PRCDC_1420600
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1420600A; gap found within coding sequence
Short protein (PRSY57_1420600, KYN93873.1) was converted to a misc_feature.
DNA-directed RNA polymerase III subunit C, putative
mitochondrial import inner membrane translocase subunit TIM8, putative
mitochondrial ribosomal protein L21 precursor, putative
ERAD-associated E3 ubiquitin-protein ligase HRD1, putative
gap found within coding sequence; ortholog of PRCDC_1422500
part of same gene as PRSY57_1422500B; gap found within coding sequence
part of same gene as PRSY57_1422500A; gap found within coding sequence
gap found within coding sequence; ortholog of PRCDC_1422600
serine/threonine protein phosphatase 7, putative
part of same gene as PRSY57_1422600B; gap found within coding sequence
part of same gene as PRSY57_1422600A; gap found within coding sequence
calcium-dependent protein kinase, putative
vacuolar protein sorting-associated protein 3, putative
gap found within coding sequence; ortholog of PRCDC_1424600
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1424600A; gap found within coding sequence
Short protein (PRSY57_1424600, KYN93904.1) was converted to a misc_feature.
ATP-binding cassette sub-family G member 2, putative
phosphoenolpyruvate carboxylase, putative
ubiquinol-cytochrome c reductase hinge protein, putative
gap found within coding sequence; ortholog of PRCDC_1426700
conserved Plasmodium membrane protein, unknown function; part of same gene as PRSY57_1426700A.1, PRSY57_1426700A.2; gap found within coding sequence
conserved Plasmodium membrane protein, unknown function; part of same gene as PRSY57_1426700B, PRSY57_1426700A.1; transcript variant 2; alternatively spliced; gap found within coding sequence
conserved Plasmodium membrane protein, unknown function; part of same gene as PRSY57_1426700B, PRSY57_1426700A.2; transcript variant 1; alternatively spliced; gap found within coding sequence
DNA mismatch repair protein MSH2, putative
CorA-like Mg2+ transporter protein, putative
exosome complex exonuclease RRP41, putative
proliferation-associated protein 2g4, putative
peptide chain release factor 1, putative
transcription initiation TFIID-like, putative
apicoplast ribosomal protein L15 precursor, putative
gap found within coding sequence; ortholog of PRCDC_1428600
part of same gene as PRSY57_1428600A; gap found within coding sequence
part of same gene as PRSY57_1428600B; gap found within coding sequence
rRNA (adenosine-2'-O-)-methyltransferase, putative
mitochondrial ribosomal protein L15 precursor, putative
serine/threonine protein phosphatase 2A activator, putative
NADP-specific glutamate dehydrogenase, putative
cytochrome c oxidase subunit 2, putative
mitochondrial ribosomal protein L17-2 precursor, putative
large ribosomal subunit associated GTPase, putative
ATP-specific succinyl-CoA synthetase beta subunit, putative
apyrase, putative; ortholog of PRCDC_1431100
voltage-dependent anion-selective channel protein, putative
protein-L-isoaspartate(D-aspartate) O- methyltransferase, putative
H/ACA ribonucleoprotein complex subunit 3, putative
chromatin assembly factor 1 P55 subunit, putative
microsomal signal peptidase protein, putative
queuine tRNA-ribosyltransferase, putative
Hsp70/Hsp90 organizing protein, putative
dynein-related AAA-type ATPase, putative
mitochondrial import inner membrane translocase subunit TIM17, putative
mitochondrial acidic protein MAM33, putative
cytochrome c oxidase assembly protein, putative
NAD(P)H-dependent glutamate synthase, putative
ATP-dependent Clp protease proteolytic subunit, putative
ribonucleoside-diphosphate reductase, large subunit, putative
trafficking protein particle complex subunit 5, putative
eukaryotic translation initiation factor eIF2A, putative
gap found within coding sequence; ortholog of PRCDC_1437700
part of same gene as PRSY57_1437700B; gap found within coding sequence
part of same gene as PRSY57_1437700A; gap found within coding sequence
cleavage and polyadenylation specificity factor, putative
gap found within coding sequence; ortholog of PRCDC_1438100
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1438100B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1438100A; gap found within coding sequence
ubiquinol-cytochrome c reductase iron-sulfur subunit, putative
CCAAT-binding transcription factor, putative
leucine carboxyl methyltransferase, putative
vesicle-associated membrane protein, putative
ortholog of PRCDC_1439600; the first two exons contain an apicoplast-targeting presequence and are shared by the gene immediately upstream, PRSY57_1439500
ortholog of PRCDC_1439500; the first two exons contain an apicoplast-targeting presequence and are shared by the gene immediately downstream, PRSY57_1439600
serine/threonine protein kinase, putative
transcription factor TFIIH complex subunit Tfb5, putative
replication factor A protein 3, putative
protein prenyltransferase alpha subunit, putative
protein transport protein SEC7, putative
U6 snRNA-associated Sm-like protein LSm5, putative
poly(A)-specific ribonuclease PARN, putative
1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
eukaryotic initiation factor 2alpha kinase 1
mitochondrial ribosomal protein S29 precursor, putative
ATP-dependent RNA helicase DDX5, putative
pyruvate dehydrogenase E1 component subunit beta, putative
gap found within coding sequence; ortholog of PRCDC_1446000
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1446000A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1446000B; gap found within coding sequence
glutaminyl-peptide cyclotransferase, putative
mitochondrial ribosomal protein S14 precursor, putative
calponin homology domain-containing protein, putative
multidrug resistance protein 2 (heavy metal transport family)
U3 snoRNA-associated small subunit rRNA processing protein, putative
gamete egress and sporozoite traversal protein, putative
DNA replication related protein, putative
exosome complex exonuclease RRP6, putative
signal recognition particle subunit SRP54, putative
DNA polymerase delta interacting protein, putative
transcriptional regulatory protein sir2b
pre-mRNA-splicing factor CWF18, putative
protein phosphatase 2b regulatory subunit, putative
small subunit rRNA processing factor, putative
ortholog of PRCDC_1452200; possible contamination with P. gaboni reads
Possible contamination with P. gaboni reads; conserved Plasmodium protein, unknown function
pyridine nucleotide transhydrogenase, putative
glucose-6-phosphate dehydrogenase-6- phosphogluconolactonase
mitochondrial ribosomal protein S11 precursor, putative
6-phosphogluconate dehydrogenase, decarboxylating, putative
serine hydroxymethyltransferase, putative
mitochondrial ribosomal protein L28 precursor, putative
V-type H(+)-translocating pyrophosphatase, putative
vacuolar protein sorting-associated protein 4, putative
large ribosomal subunit nuclear export factor, putative
spindle assembly abnormal protein 4, putative
pyridoxal 5'-phosphate synthase, putative
FYVE and coiled-coil domain-containing protein, putative
ubiquitin carboxyl-terminal hydrolase isozyme L3
inner membrane complex sub-compartment protein 3, putative
snRNA-activating protein complex subunit 3, putative
apicoplast ribosomal protein S10 precursor, putative
U3 small nucleolar ribonucleoprotein IMP3, putative
meiotic nuclear division protein 1, putative
gap found within coding sequence; ortholog of PRCDC_1462100
glyceraldehyde-3-phosphate dehydrogenase, putative
part of same gene as PRSY57_1462100B; gap found within coding sequence
part of same gene as PRSY57_1462100A; gap found within coding sequence
hypothetical protein; ortholog of PRCDC_1462350
DNA-directed RNA polymerase III subunit RPC4, putative
mitochondrial ribosomal protein S6-2 precursor, putative
ATP-dependent zinc metalloprotease FTSH, putative
tRNA 3'-trailer sequence RNase, putative
gap found within coding sequence; ortholog of PRCDC_1465100
part of same gene as PRSY57_1465100B; gap found within coding sequence
part of same gene as PRSY57_1465100A; gap found within coding sequence
kelch-like domain-containing protein phosphatase, putative
26S proteasome regulatory subunit RPN2, putative
large ribosomal subunit assembling protein, putative
DNA-3-methyladenine glycosylase, putative
1-deoxy-D-xylulose 5-phosphate reductoisomerase, putative
50S ribosomal protein L22, apicoplast, putative
splicing factor U2AF large subunit, putative
translation initiation factor IF-1, putative
shewanella-like protein phosphatase 1, putative
small subunit rRNA processing KH domain protein, putative
biotin carboxylase subunit of acetyl CoA carboxylase, putative
mediator of RNA polymerase II transcription subunit 6, putative
mitochondrial pyruvate carrier protein 2, putative
proteasome subunit beta type-2, putative
RNA 3'-terminal phosphate cyclase-like protein, putative
inorganic anion exchanger, inorganic anion antiporter
gap found within coding sequence; ortholog of PRCDC_1470500
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1470500A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1470500B; gap found within coding sequence
M1-family alanyl aminopeptidase, putative
DNA-directed RNA polymerase, alpha subunit, putative
mitochondrial ribosomal protein L20 precursor, putative
DNA repair metallo-beta-lactamase protein, putative
proteasome subunit alpha type-1, putative
cytochrome c oxidase assembly protein COX11, putative
gap found within coding sequence; ortholog of PRCDC_1474500
part of same gene as PRSY57_1474500A; gap found within coding sequence
part of same gene as PRSY57_1474500B; gap found within coding sequence
gap found within coding sequence; ortholog of PRCDC_1475400
serine/threonine protein kinase, FIKK family
part of same gene as PRSY57_1475400B; gap found within coding sequence
part of same gene as PRSY57_1475400A; gap found within coding sequence
exported protein (hyp15); ortholog of PRCDC_1476200
exported protein (PHISTa); ortholog of PRCDC_1477000
putative exported protein; ortholog of PRCDC_1477200
putative exported protein; ortholog of PRCDC_1477300
exported protein (PHISTa); ortholog of PRCDC_1477500
ortholog of PRCDC_1477900; annotated by similarity to unknown transcript annotated in PrCDC
unknown; annotated by similarity to unknown transcript annotated in PrCDC