Plasmodium reichenowi strain SY57 chromosome 13, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (10-FEB-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003854.\nAssembly created using Velvet Columbus followed by PAGIT and\nGapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; PAGIT v. 1; GapFiller v.\n 1.11\nGenome Coverage :: 200x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
exported protein (PHISTa-like); ortholog of PRCDC_1300200
gap found within coding sequence; ortholog of PRCDC_1300600
part of same gene as PRSY57_1300600B; gap found within coding sequence
part of same gene as PRSY57_1300600A; gap found within coding sequence
surface-associated interspersed protein 13.1 (SURFIN 13.1)
Plasmodium exported protein, unknown function
conserved Plasmodium membrane protein, unknown function
conserved Plasmodium protein, unknown function
DEAD/DEAH box ATP-dependent RNA helicase, putative
methyltransferase-like protein, putative
encoded by transcript variant 2; alternatively spliced
encoded by transcript variant 1; alternatively spliced
transcript variant 2; alternatively spliced
transcript variant 1; alternatively spliced
sodium/hydrogen exchanger, Na+, H+ antiporter
chromosome condensation protein, putative
CorA-like Mg2+ transporter protein, putative
mitogen-activated protein kinase phosphatase 1, putative
membrane integral peptidase, M50 family, putative
SAM dependent methyltransferase, putative
26S protease regulatory subunit 10B, putative
vacuolar ATP synthase subunit h, putative
U1 small nuclear ribonucleoprotein A, putative
exosome complex component RRP40, putative
U3 small nucleolar RNA-associated protein 6, putative
DNA-directed RNA polymerase alpha chain, putative
CCAAT-binding transcription factor, putative
ortholog of PRCDC_1307300; Putative cytosolic small ribosomal subunit, based on 1) co-expression analyses between Plasmodium falciparum erythrocytic stage and Saccharomyces cervisiae cell cycle and 2) similarity with YHR021C (PMID:20078859).
protein phosphatase 2c-like protein, putative
U4/U6 small nuclear ribonucleoprotein PRP3, putative
H/ACA ribonucleoprotein complex subunit 1, putative
ribosomal RNA methyltransferase, putative
vacuolar protein sorting-associated protein 18, putative
mitochondrial ATP synthase delta subunit, putative
mitochondrial ribosomal protein S15 precursor, putative
alternative splicing regulator, putative
ATP synthase subunit gamma, mitochondrial, putative
26S protease regulatory subunit 7, putative
malonyl CoA-acyl carrier protein transacylase precursor
mitochondrial ribosomal protein S35 precursor, putative
translation initiation factor IF-2, putative
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial, putative
eukaryotic translation initiation factor 4 gamma, putative
ubiquitin-like protein nedd8-like protein
methionyl-tRNA formyltransferase, putative
peptidyl-prolyl cis-trans isomerase, putative
septum formation protein MAF-like protein
telomerase reverse transcriptase, putative
cop-coated vesicle membrane protein p24 precursor, putative
TFIIH basal transcription factor subunit, putative
gap found within coding sequence; ortholog of PRCDC_1314400
zinc finger (CCCH type) protein, putative
part of same gene as PRSY57_1314400A; gap found within coding sequence
part of same gene as PRSY57_1314400B; gap found within coding sequence
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61, putative
choline-phosphate cytidylyltransferase, putative
protein transport protein SEC20, putative
U4/U6.U5 tri-snRNP-associated protein 2, putative
DNA replication licensing factor MCM4, putative
small ribosomal subunit nuclear export protein, putative
glycerol-3-phosphate 1-O-acyltransferase, putative
chromosome segregation protein, putative
N2,N2-dimethylguanosine tRNA methyltransferase, putative
protein phosphatase PP2A regulatory subunit A, putative
ATP-dependent Clp protease adaptor protein ClpS, putative
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, putative
3',5'-cyclic nucleotide phosphodiesterase, putative
protein transport protein SFT2, putative
gap found within coding sequence; ortholog of PRCDC_1321200
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1321200B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1321200A; gap found within coding sequence
translation initiation factor EIF-2B subunit- like protein
Short protein (PRSY57_1321400, KYN94667.1) was converted to a misc_feature.
gap found within coding sequence; ortholog of PRCDC_1321900
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1321900B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1321900A; gap found within coding sequence
vacuolar ATP synthase subunit g, putative
acetyltransferase, GNAT family, putative
glideosome associated protein with multiple membrane spans 1
vacuolar protein sorting-associated protein 52, putative
similar to DNA sequence:PlasmoDB:PRCDC_1323000
micro-fibrillar-associated protein, putative
dihydrofolate synthase/folylpolyglutamate synthase
U6 snRNA-associated Sm-like protein LSm6, putative
mitochondrial fission 1 protein, putative
degenerate pseudogene, possibly homolog of PBANKA_134130, PCHAS_134590. Pseudogene likely also present in PrCDC, Pf3D7 and PgSY75.
translation initiation factor EIF-2B gamma subunit, putative
gap found within coding sequence; ortholog of PRCDC_1326000
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1326000A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1326000B; gap found within coding sequence
ribonuclease P protein subunit RPR2, putative
nicotinate-nucleotide adenylyltransferase, putative
regulator of nonsense transcripts 3B, putative
ribose-phosphate pyrophosphokinase, putative
proteasome subunit beta type-7, putative
transcriptional regulatory protein sir2a
DNA-directed RNA polymerase 3 largest subunit
chromatin assembly factor 1 subunit, putative
gap found within coding sequence; ortholog of PRCDC_1328500
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1328500B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1328500A; gap found within coding sequence
apicoplast calcium binding protein 1, putative
ER lumen protein retaining receptor 1, putative
GPI transamidase subunit PIG-U, putative
gap found within coding sequence; ortholog of PRCDC_1329800
Short protein (PRSY57_1329800, KYN94751.1) was converted to a misc_feature.
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1329800A; gap found within coding sequence
signal peptidase 21 kDa subunit, putative
SAM-dependent RNA methyltransferase, putative
apurinic/apyrimidinic endonuclease Apn1, putative
translation initiation factor 6, putative
transmembrane protein Tmp21-like protein
U3 snoRNA-associated small subunit rRNA processing associated protein, putative
histone H3-like centromeric protein CSE4, putative
MSP7-like protein; ortholog of PRCDC_1333600
MSP7-like protein; ortholog of PRCDC_1333900; fragment
26S proteasome regulatory subunit RPN3, putative
gap found within coding sequence; ortholog of PRCDC_1337400
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1337400A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1337400B; gap found within coding sequence
serine/threonine protein kinase, putative
mitochondrial ribosomal protein L49 precursor, putative
mitotic-spindle organizing protein 1, putative
ortholog of PRCDC_1339000; may be nonfunctional due to frameshift
exosome complex component RRP42, putative
mitochondrial pyruvate carrier protein 1, putative
vacuolar ATP synthase subunit d, putative
tetratricopeptide repeat family protein, putative
sporozoite protein essential for cell traversal
tRNA guanosine-2'-O-methyltransferase, putative
UDP-N-acetylglucosamine pyrophosphorylase, putative
U4/U6 small nuclear ribonucleoprotein PRP4, putative
ortholog of PRCDC_1344200; possible contamination with P. gaboni reads
Possible contamination with P. gaboni reads
ubiquitin-conjugating enzyme E2, putative
inner membrane complex protein, putative
isocitrate dehydrogenase (NADP), mitochondrial precursor
protein transport protein SEC61 subunit alpha, putative
DNA/RNA-binding protein Alba 2, putative
DNA/RNA-binding protein Alba 4, putative
ethanolamine-phosphate cytidylyltransferase, putative
gap found within coding sequence; ortholog of PRCDC_1348000
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1348000A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1348000B; gap found within coding sequence
nucleoside diphosphate hydrolase, putative
cytidine and deoxycytidylate deaminase, putative
nucleolar preribosomal associated cytoplasmic ATPase, putative
small nuclear ribonucleoprotein E, putative
ubiquitin-activating enzyme E1, putative
phosphatidylinositol transfer protein, putative
inner membrane complex protein 1f, putative
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
ABC transporter, (heavy metal transporter family), putative
P-loop containing nucleoside triphosphate hydrolase, putative
membrane associated histidine-rich protein
ortholog of PRCDC_1352400; possible contamination with P. gaboni reads
RNA polymerase II transcription factor B subunit 4, putative
ER lumen protein retaining receptor, putative
proteasome subunit alpha type-4, putative
proteasome subunit alpha type-7, putative
inositol-polyphosphate 5-phosphatase, putative
large subunit rRNA methyltransferase, putative
V-type proton ATPase 21 kDa proteolipid subunit, putative
DNA replication licensing factor MCM6, putative
histone-lysine N-methyltransferase, putative
serine/threonine protein phosphatase 5, putative
NLI interacting factor-like phosphatase, putative
mitochondrial import inner membrane translocase subunit TIM23, putative
phosphatase 2A regulatory subunit-related protein, putative
regulator of chromosome condensation, putative
gap found within coding sequence; ortholog of PRCDC_1356300
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1356300B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1356300A; gap found within coding sequence
U3 snoRNA-associated small subunit rRNA processing protein, putative
pyrroline-5-carboxylate reductase, putative
small subunit rRNA processing factor, putative
riboflavin kinase / FAD synthase family protein, putative
high mobility group protein B4, putative
exosome complex exonuclease RRP44, putative
rRNA associated RNA binding protein, putative
protein arginine N-methyltransferase 5, putative
protein transport protein Sec24A, putative
bifunctional polynucleotide phosphatase/kinase
mitochondrial ribosomal protein L9 precursor, putative
ortholog of PRCDC_1362800; annotated by similarity to unknown transcript annotated in PrCDC
unknown; annotated by similarity to unknown transcript annotated in PrCDC
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative
exosome complex component RRP45, putative
hypothetical protein; ortholog of PRCDC_1363600
DNA-directed RNA polymerase II, putative
mitochondrial ribosomal protein S17 precursor, putative
DNA topoisomerase VI, b subunit, putative
SNARE associated Golgi protein, putative
ubiquitin-60S ribosomal protein L40, putative
signal recognition particle receptor alpha subunit
gap found within coding sequence; ortholog of PRCDC_1365700
part of same gene as PRSY57_1365700A; gap found within coding sequence
part of same gene as PRSY57_1365700B; gap found within coding sequence
suppressor of kinetochore protein 1, putative
U1 small nuclear ribonucleoprotein, putative
ribosome biogenesis protein MRT4, putative
26S proteasome regulatory subunit RPN11, putative
mitochondrial import inner membrane translocase subunit TIM9, putative
glycosylphosphatidylinositol anchor attachment 1 protein, putative
U2 small nuclear ribonucleoprotein A', putative