Plasmodium reichenowi strain SY57 chromosome 12, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (10-FEB-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003853.\nAssembly created using Velvet Columbus followed by PAGIT and\nGapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; PAGIT v. 1; GapFiller v.\n 1.11\nGenome Coverage :: 200x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
serine/threonine protein kinase, FIKK family
exported protein (PHISTb); ortholog of PRCDC_1200400
PHIST domain- and DNaJ domain-containing RESA- like protein
liver stage associated protein 1, putative
Plasmodium exported protein, unknown function
conserved Plasmodium membrane protein, unknown function
cytochrome c oxidase assembly protein COX19, putative
encoded by transcript variant 1; alternatively spliced
encoded by transcript variant 2; alternatively spliced
transcript variant 1; alternatively spliced
transcript variant 2; alternatively spliced
gap found within coding sequence; ortholog of PRCDC_1202000
part of same gene as PRSY57_1202000A; gap found within coding sequence
part of same gene as PRSY57_1202000B; gap found within coding sequence
conserved Plasmodium protein, unknown function
high mobility group protein B1, putative
origin recognition complex subunit 1, putative
signal recognition particle subunit SRP14, putative
gap found within coding sequence; ortholog of PRCDC_1203200; annotated by similarity to unknown transcript annotated in PrCDC
unknown; annotated by similarity to unknown transcript annotated in PrCDC; part of same gene as PRSY57_1203200A; gap found within coding sequence
unknown; annotated by similarity to unknown transcript annotated in PrCDC; part of same gene as PRSY57_1203200B; gap found within coding sequence
ubiquitin-conjugating enzyme E2, putative
eukaryotic translation initiation factor 5A
O-phosphoseryl-tRNA(Sec) selenium transferase, putative
high mobility group protein B3, putative
shewanella-like protein phosphatase 2, putative
eukaryotic translation initiation factor 3 subunit 8, putative
gap found within coding sequence; ortholog of PRCDC_1205600
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1205600A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1205600B; gap found within coding sequence
Tat binding protein 1(TBP-1)-interacting protein, putative
DNA-directed RNA polymerase III subunit, putative
eukaryotic translation initiation factor 5, putative
small subunit rRNA processing factor, putative
tRNA delta(2)-isopentenylpyrophosphate transferase, putative
apicoplast ribosomal protein L29 precursor, putative
mitochondrial import inner membrane translocase subunit TIM10, putative
gap found within coding sequence; ortholog of PRCDC_1208500
U6 snRNA-associated Sm-like protein LSm7, putative
part of same gene as PRSY57_1208500B; gap found within coding sequence
part of same gene as PRSY57_1208500A; gap found within coding sequence
zinc finger transcription factor, putative
cytosolic iron-sulfur protein assembly protein 1, putative
ATP synthase mitochondrial F1 complex assembly factor 1, putative
50S ribosomal protein L1, apicoplast, putative
general transcription factor 3C polypeptide 5, putative
mitochondrial ribosomal protein S18 precursor, putative
gap found within coding sequence; ortholog of PRCDC_1210900
lysine-specific histone demethylase 1, putative
part of same gene as PRSY57_1210900B; gap found within coding sequence
part of same gene as PRSY57_1210900A; gap found within coding sequence
DNA replication licensing factor MCM5, putative
non-SERCA-type Ca2+ -transporting P-ATPase
glutathione peroxidase-like thioredoxin peroxidase, putative
tetratricopeptide repeat family protein, putative
glycerol-3-phosphate 1-O-acyltransferase, putative
eukaryotic translation initiation factor 3 subunit 10, putative
iron-sulfur subunit of succinate dehydrogenase
ortholog of PRCDC_1212300; annotated by similarity to unknown transcript annotated in PrCDC
unknown; annotated by similarity to unknown transcript annotated in PrCDC
integral membrane protein GPR180, putative
phosphatidylinositol-glycan biosynthesis class O protein, putative
geranylgeranyl transferase type2 beta subunit, putative
gap found within coding sequence; ortholog of PRCDC_1213800
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1213800B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1213800A; gap found within coding sequence
glycerol-3-phosphate dehydrogenase, putative
signal recognition particle subunit SRP19, putative
cell traversal protein for ookinetes and sporozoites
snoRNA-associated small subunit rRNA processing protein, putative
anaphase promoting complex subunit 10, putative
thrombospondin-related apical membrane protein
gap found within coding sequence; ortholog of PRCDC_1217700
triose or hexose phosphate/phosphate translocator, putative
part of same gene as PRSY57_1217700A; gap found within coding sequence
part of same gene as PRSY57_1217700B; gap found within coding sequence
gap found within coding sequence; ortholog of PRCDC_1217900
part of same gene as PRSY57_1217900A; gap found within coding sequence
part of same gene as PRSY57_1217900B; gap found within coding sequence
erythrocyte membrane protein 1; ortholog of PRCDC_1218800; exon 2
D-ribulose-5-phosphate 3-epimerase, putative
hypothetical protein; interrupted by gap; ortholog of PRCDC_1219500
debranching enzyme-associated ribonuclease, putative
ribosome biogenesis protein TSR3, putative
histone-lysine N-methyltransferase, H3 lysine-4 specific, putative
inner membrane complex protein 1h, putative
gap found within coding sequence; ortholog of PRCDC_1221000
part of same gene as PRSY57_1221000B; gap found within coding sequence
part of same gene as PRSY57_1221000A; gap found within coding sequence
cAMP-dependent protein kinase regulatory subunit
phospholipid-transporting ATPase, putative
ubiquitin-activating enzyme E1, putative
haloacid dehalogenase-like hydrolase, putative
histone S-adenosyl methyltransferase, putative
gap found within coding sequence; ortholog of PRCDC_1228200
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1228200B, PRSY57_1228200A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1228200C, PRSY57_1228200A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1228200C, PRSY57_1228200B; gap found within coding sequence
ortholog of PRCDC_1228500; annotated by similarity to unknown transcript annotated in PrCDC
T-complex protein 1, gamma subunit, putative
gap found within coding sequence; ortholog of PRCDC_1229200
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1229200A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1229200B; gap found within coding sequence
gap found within coding sequence; ortholog of PRCDC_1229300
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1229300B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1229300A; gap found within coding sequence
thioredoxin-like associated protein 1, putative
vacuolar transporter chaperone, putative; ortholog of PRCDC_1229500
subpellicular microtubule protein 2, putative
gap found within coding sequence; ortholog of PRCDC_1229700
ATP-dependent protease subunit ClpQ, putative
part of same gene as PRSY57_1229700A; gap found within coding sequence
part of same gene as PRSY57_1229700B; gap found within coding sequence
protein transport protein SEC13, putative
serine/threonine protein kinase RIO1, putative
pre-mRNA splicing factor RNA helicase, putative
phenylalanyl-tRNA synthetase alpha chain, putative
dihydrolipoyl dehydrogenase, mitochondrial
gap found within coding sequence; ortholog of PRCDC_1232000
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1232000B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1232000A; gap found within coding sequence
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
pentatricopeptide repeat protein, putative
homocysteine S-methyltransferase, putative
hypothetical protein; ortholog of PRCDC_1233400
DNA polymerase epsilon subunit b, putative
PIH1 domain-containing protein, putative
V-type K+-independent H+-translocating inorganic pyrophosphatase
CCR4-NOT transcription complex subunit 4, putative
serine hydroxymethyltransferase, putative
ATP synthase subunit beta, mitochondrial, putative
vesicle transport v-SNARE protein VTI1, putative
protein-S-isoprenylcysteine O-methyltransferase, putative
SUMO-activating enzyme subunit 2, putative
rRNA processing WD-repeat protein, putative
gap found within coding sequence; ortholog of PRCDC_1237500
part of same gene as PRSY57_1237500B; gap found within coding sequence
part of same gene as PRSY57_1237500A; gap found within coding sequence
sphingomyelin phosphodiesterase, putative
gap found within coding sequence; ortholog of PRCDC_1237900
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1237900B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1237900A; gap found within coding sequence
mitochondrial ribosomal protein L23 precursor, putative
ATP-dependent zinc metalloprotease FTSH 1, putative
vacuolar protein sorting-associated protein 16, putative
3-hydroxyisobutyryl-coenzyme A hydrolase, putative
gap found within coding sequence; ortholog of PRCDC_1241000
part of same gene as PRSY57_1241000B; gap found within coding sequence
part of same gene as PRSY57_1241000A; gap found within coding sequence
replication factor C subunit 4, putative
DEAD/DEAH box ATP-dependent RNA helicase, putative
tetratricopeptide repeat protein, putative
queuine tRNA-ribosyltransferase, putative
protein geranylgeranyltransferase type II, alpha subunit, putative
mitochondrial import inner membrane translocase subunit TIM13, putative
translation initiation factor SUI1, putative
microtubule associated katanin, putative
double C2-like domain-containing protein, putative
glucose inhibited division protein a-like protein
N-alpha-acetyltransferase 15, NatA auxiliary subunit, putative
ADP-ribosylation factor GTPase-activating protein, putative
cytoplasmic translation machinery associated protein, putative
gap found within coding sequence; ortholog of PRCDC_1244300
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1244300B; gap found within coding sequence
Short protein (PRSY57_1244300, KYN95546.1) was converted to a misc_feature.
NEDD8-conjugating enzyme UBC12, putative
mitochondrial ribosomal protein L3 precursor, putative
gap found within coding sequence; ortholog of PRCDC_1244900
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1244900B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1244900A; gap found within coding sequence
clathrin coat assembly protein AP180, putative
myosin A tail domain interacting protein
signal recognition particle receptor, beta subunit
RAC-beta serine/threonine protein kinase
DNA replication origin binding protein, putative
FK506-binding protein (FKBP)-type peptidyl- prolyl isomerase
gap found within coding sequence; ortholog of PRCDC_1246900
serine/threonine protein kinase, putative
part of same gene as PRSY57_1246900B; gap found within coding sequence
part of same gene as PRSY57_1246900A; gap found within coding sequence
similar to DNA sequence:PlasmoDB:PRCDC_1247200
nucleolar rRNA processing protein, putative
26S protease regulatory subunit 8, putative
gap found within coding sequence; ortholog of PRCDC_1249300
apicoplast dimethyladenosine synthase, putative
part of same gene as PRSY57_1249300A; gap found within coding sequence
part of same gene as PRSY57_1249300B; gap found within coding sequence
gap found within coding sequence; ortholog of PRCDC_1249700
vacuolar protein sorting-associated protein 26, putative
part of same gene as PRSY57_1249700B; gap found within coding sequence
part of same gene as PRSY57_1249700A; gap found within coding sequence
eukaryotic translation initiation factor 2b, subunit 2, putative