Plasmodium reichenowi strain SY57 chromosome 11, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (10-FEB-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003852.\nAssembly created using Velvet Columbus followed by PAGIT and\nGapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; PAGIT v. 1; GapFiller v.\n 1.11\nGenome Coverage :: 200x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
Plasmodium exported protein, unknown function
exported protein (hyp11); ortholog of PRCDC_1101400; frameshift
conserved Plasmodium protein, unknown function
60S acidic ribosomal protein P1, putative
FeS cluster assembly protein SufD, putative
CCR4-NOT transcription complex subunit 1, putative
phenylalanyl-tRNA synthetase beta chain, putative
gap found within coding sequence; ortholog of PRCDC_1102900
part of same gene as PRSY57_1102900B; gap found within coding sequence
part of same gene as PRSY57_1102900A; gap found within coding sequence
encoded by transcript variant 2; alternatively spliced
encoded by transcript variant 1; alternatively spliced
transcript variant 2; alternatively spliced
transcript variant 1; alternatively spliced
calcium/calmodulin-dependent protein kinase, putative
conserved Plasmodium membrane protein, unknown function
apicoplast ribosomal protein S15 precursor, putative
dna2/nam7 helicase family member, putative
U6 snRNA-associated Sm-like protein LSm4, putative
polyadenylate-binding protein-interacting protein 1, putative
gap found within coding sequence; ortholog of PRCDC_1107000
succinyl-CoA synthetase alpha subunit, putative
part of same gene as PRSY57_1107000B; gap found within coding sequence
part of same gene as PRSY57_1107000A; gap found within coding sequence
endoplasmic reticulum-resident calcium binding protein, putative
similar to DNA sequence:PlasmoDB:PRCDC_1107500
similar to DNA sequence:PlasmoDB:PRCDC_1107800
U3/U14 snoRNA-associated small subunit rRNA processing protein, putative
similar to DNA sequence:PlasmoDB:PRCDC_1108000
similar to DNA sequence:PlasmoDB:PRCDC_1108100
similar to DNA sequence:PlasmoDB:PRCDC_1108200
similar to DNA sequence:PlasmoDB:PRCDC_1108300
vacuolar protein sorting-associated protein 35, putative
mitochondrial ribosomal protein L11 precursor, putative
replication factor C subunit 5, putative
endonuclease/exonuclease/phosphatase family protein, putative
peptidyl-prolyl cis-trans isomerase, putative
ubiquinone biosynthesis protein COQ4, putative
ubiquitin domain-containing protein DSK2, putative
gap found within coding sequence; ortholog of PRCDC_1112600
part of same gene as PRSY57_1112600A.2, PRSY57_1112600B; transcript variant 1; alternatively spliced; gap found within coding sequence
part of same gene as PRSY57_1112600A.1, PRSY57_1112600B; transcript variant 2; alternatively spliced; gap found within coding sequence
part of same gene as PRSY57_1112600A.1, PRSY57_1112600A.2; gap found within coding sequence
ortholog of PRCDC_1112800; annotated by similarity to unknown transcript annotated in PrCDC
unknown; annotated by similarity to unknown transcript annotated in PrCDC
serine/threonine protein kinase, putative
glycerol-3-phosphate dehydrogenase, putative
transcription factor with AP2 domain(s), putative
pyridoxine biosynthesis protein PDX2, putative
guanine nucleotide-exchange factor SEC12, putative
oligosaccharyl transferase STT3 subunit, putative
gap found within coding sequence; ortholog of PRCDC_1115200
part of same gene as PRSY57_1115200A; gap found within coding sequence
part of same gene as PRSY57_1115200B; gap found within coding sequence
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
GTP-binding nuclear protein RAN/TC4, putative
DNA mismatch repair protein MLH, putative
haloacid dehalogenase-like hydrolase, putative
box C/D snoRNP rRNA 2'-O-methylation factor, putative
splicing factor U2AF small subunit, putative
ATP-dependent zinc metalloprotease FTSH, putative
alternative splicing factor ASF-1, putative
gap found within coding sequence; ortholog of PRCDC_1118400
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1118400B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1118400A; gap found within coding sequence
alpha/beta hydrolase fold domain containing protein, putative
heat shock factor-binding protein 1, putative
WD domain, G-beta repeat-containing protein
gap found within coding sequence; ortholog of PRCDC_1121000
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1121000B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1121000A; gap found within coding sequence
translation elongation factor EF-1, subunit alpha, putative
mitochondrial ribosomal protein L37, putative
endoplasmic reticulum oxidoreductin, putative
U6 snRNA-associated Sm-like protein LSm1, putative
pyruvate dehydrogenase E1 component subunit alpha, putative
ortholog of PRCDC_1123300; gene is present in IT, but not in 3D7
vacuolar membrane protein-related, putative
gap found within coding sequence; ortholog of PRCDC_1123700
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1123700A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1123700B; gap found within coding sequence
mitochondrial import inner membrane translocase subunit TIM44, putative
small nuclear ribonucleoprotein Sm D1, putative
gap found within coding sequence; ortholog of PRCDC_1124200
part of same gene as PRSY57_1124200A; gap found within coding sequence
part of same gene as PRSY57_1124200B; gap found within coding sequence
large ribosomal subunit processing factor, putative
small nuclear ribonucleoprotein F, putative
gap found within coding sequence; ortholog of PRCDC_1126100
CRAL/TRIO domain-containing protein, putative
part of same gene as PRSY57_1126100B; gap found within coding sequence
part of same gene as PRSY57_1126100A; gap found within coding sequence
cochaperone prefoldin complex subunit, putative
multiprotein bridging factor type 1, putative
geranylgeranyl pyrophosphate synthase, putative
CCR4-NOT transcription complex subunit 2, putative
parasitophorous vacuolar protein 1, putative
26S proteasome regulatory subunit RPN7, putative
A/G-specific adenine glycosylase, putative
phosphatidylinositol-4-phosphate 5-kinase, putative
UNC-50 protein, putative; ortholog of PRCDC_1128250
similar to DNA sequence:PlasmoDB:PRCDC_1128250
phosphoacetylglucosamine mutase, putative
60S acidic ribosomal protein P0, putative
26S protease regulatory subunit 6a, putative
structural maintenance of chromosome protein, putative
gap found within coding sequence; ortholog of PRCDC_1129600
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1129600B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1129600A; gap found within coding sequence
oxysterol-binding protein-related protein 2
mitochondrial ribosomal protein L2 precursor
glycine cleavage system H protein, putative
conserved membrane protein, unknown function
gap found within coding sequence; ortholog of PRCDC_1131600
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1131600A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1131600B; gap found within coding sequence
RNA (uracil-5-)methyltransferase, putative
DNA-directed RNA polymerase I subunit RPA2, putative
encoded by transcript variant 3; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 3; alternatively spliced
hypothetical protein; ortholog of PRCDC_1133600
3-oxo-5-alpha-steroid 4-dehydrogenase, putative
signal recognition particle subunit SRP72, putative
mitochondrial ribosomal protein S9 precursor, putative
UVB-resistance protein UVR8-like protein
apicoplast ribosomal protein S14p/S29e precursor, putative
ortholog of PRCDC_1137300; annotated by similarity to unknown transcript annotated in PrCDC
ortholog of PRCDC_1137400; annotated by similarity to unknown transcript annotated in PrCDC
ortholog of PRCDC_1137800; annotated by similarity to unknown transcript annotated in PrCDC
vacuolar ATP synthase subunit f, putative
P-loop containing nucleoside triphosphate hydrolase, putative
phosphatidylinositol N- acetylglucosaminyltransferase subunit H, putative
inner membrane complex protein 1b, putative
coproporphyrinogen-III oxidase, putative
translation initiation factor eIF-1A, putative
mitochondrial large subunit ribosomal protein, putative
ubiquitin activating enzyme (E1) subunit Aos1, putative
apicoplast import protein Tic20, putative
cysteine-rich PDZ-binding protein, putative
bicoid-interacting protein BIN3, putative
gap found within coding sequence; ortholog of PRCDC_1144300
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1144300B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PRSY57_1144300A; gap found within coding sequence
nucleolar preribosomal assembly protein, putative
CCAAT-box DNA binding protein subunit B, putative
sporozoite and liver stage asparagine-rich protein
farnesyltransferase beta subunit, putative
ring-infected erythrocyte surface antigen 2