Clostridium kluyveri NBRC 12016 plasmid pCKL1, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species
Submitted (07-SEP-2005) Contact:Masayuki Inui Research Institute of Innovative Technology for the Earth (RITE), Microbiology research group; 9-2 Kizugawadai Kizu-cho, Soraku-gun, Kyoto 619-0292, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP009050.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/11/2023 01:15:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,914\nCDSs (total) :: 3,829\nGenes (coding) :: 3,741\nCDSs (with protein) :: 3,741\nGenes (RNA) :: 85\nrRNAs :: 6, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 7, 7 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 5\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 44 of 88\nPseudo Genes (incomplete) :: 45 of 88\nPseudo Genes (internal stop) :: 23 of 88\nPseudo Genes (multiple problems) :: 20 of 88\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011930403.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011930402.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930401.1
siphovirus ReqiPepy6 Gp37-like family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011930400.1
choice-of-anchor R domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011930399.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930398.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930397.1
COORDINATES: similar to AA sequence:RefSeq:WP_012103581.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930395.1
COORDINATES: similar to AA sequence:RefSeq:WP_017750475.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278409.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988167.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011930390.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011930388.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930387.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011930385.1
COORDINATES: similar to AA sequence:RefSeq:WP_007064962.1
COORDINATES: similar to AA sequence:RefSeq:WP_011915699.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011930382.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011930381.1
COORDINATES: protein motif:HMM:NF005289.0
COORDINATES: similar to AA sequence:RefSeq:WP_011930379.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_011930377.1
COORDINATES: protein motif:HMM:NF022018.2
COORDINATES: similar to AA sequence:RefSeq:WP_011930372.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930368.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF020945.2
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011930364.1
COORDINATES: similar to AA sequence:RefSeq:WP_013291911.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930361.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930360.1
COORDINATES: similar to AA sequence:RefSeq:WP_010966983.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012620541.1
COORDINATES: similar to AA sequence:RefSeq:WP_020815146.1
COORDINATES: protein motif:HMM:NF014177.2
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011930349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930347.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011930346.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
CHC2 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015616467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930420.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930418.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930417.1
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010965200.1
phage terminase small subunit P27 family
COORDINATES: similar to AA sequence:RefSeq:WP_010965199.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930414.1
GO:0044423 - virion component [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011930413.1
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011930412.1
GO:0005515 - protein binding [Evidence IEA]
fibronectin type III domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011930410.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930409.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930408.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930407.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930406.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930405.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930404.1