Methylovorus glucosetrophus SIP3-4 plasmid pMsip02, complete sequence.
type: Entry
definition: Methylovorus glucosetrophus SIP3-4 plasmid pMsip02, complete sequence.
sequence version: NC_012972.1
sequence date: 2023-02-22
sequence: sequence
division: CON
label: NC_012972.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598498
keyword: RefSeq
source: Methylovorus glucosetrophus SIP3-4
organism: Methylovorus glucosetrophus SIP3-4
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; Methylovorus.
reference: 1
references: 21622745
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001676.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4086190\nSource DNA and bacteria available from Ludmila Chistoserdova\n(milachis@u.washington.edu)\nContacts: Ludmila Chistoserdova (milachis@u.washington.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-PGF\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Methylovorus sp. SIP3-4\nGOLD Stamp ID :: Gi03952\nFunding Program :: DOE-CSP 2009\nOxygen Requirement :: Aerobe\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nHabitat :: Fresh water\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 13:55:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,952\nCDSs (total) :: 2,894\nGenes (coding…

sequence
subclass of: SO_0000155
sequence length: 9816
topology: circular
so has quality: SO_0000988
location: 1..9816
location: region:1-9816:1
RO_0002162: 582744

NC_012972
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598498
type: BioSample
SIO_000068: biosample

1
title: Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae
author: Lapidus, A.
author: Clum, A.
author: Labutti, K.
author: Kaluzhnaya, M.G.
author: Lim, S.
author: Beck, D.A.
author: Glavina Del Rio, T.
author: Nolan, M.
author: Mavromatis, K.
author: Huntemann, M.
author: Lucas, S.
author: Lidstrom, M.E.
author: Ivanova, N.
author: Chistoserdova, L.
journal: J Bacteriol
volume: 193
issue: 15
pages: 3757-3764
year: 2011
pubmed: 21622745

21622745
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of plasmid 2 of Methylovorus sp. SIP3-4
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Clum, A.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Mikhailova, N.
author: Kayluzhnaya, M.
author: Chistoserdova, L.
journal: Unpublished

3
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Clum, A.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Mikailova, N.
author: Kayluzhnaya, M.
author: Chistoserdova, L.
journal: Submitted (13-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9816:1
position: 9816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9816:1:source
so part of: sequence
organism: Methylovorus glucosetrophus SIP3-4
mol type: genomic DNA
strain: SIP3-4
plasmid: pMsip02

582744
type: Taxonomy
SIO_000068: taxonomy

MSIP34_RS14555
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14555
old locus tag: Msip34_2832
so part of: sequence
location: complement(376..1032)
location: region:376-1032:-1
so has part: feature:376-1032:-1:exon
subclass of: SO_0000010

position:376:-1
position: 376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1032:-1
position: 1032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376-1032:-1:exon

MSIP34_RS14555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14555
old locus tag: Msip34_2832
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLYVVVEGVVETIVYPDWISIVNEDLKKVSYLDEVVDNNYILFSAGGYPNVFNVIDSAVEDISESALFDRLVVAMDAESFSYNERYDEIYNHLLQKKVKVDFKIIIQNPCFEAWALGNSGIAPRNPSDEKLKKYKRIFDILRKDPETIPDLPEEQLNKAQFSYEYLKLAIRDKGQHLHYSKNSPKLVCHPKYFSSLKERMEKKNHIRSFNDFITAFI
SIO_010081: MSIP34_RS14555
subclass of: SO_0000673
so part of: MSIP34_RS14555
location: complement(376..1032)
location: region:376-1032:-1
so has part: feature:376-1032:-1:exon

WP_041370770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:376-1032:-1:exon

MSIP34_RS14560
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14560
old locus tag: Msip34_2833
so part of: sequence
location: complement(1034..2119)
location: region:1034-2119:-1
so has part: feature:1034-2119:-1:exon
subclass of: SO_0000010

position:1034:-1
position: 1034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2119:-1
position: 2119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1034-2119:-1:exon

MSIP34_RS14560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14560
old locus tag: Msip34_2833
inference: COORDINATES: protein motif:HMM:NF024700.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MILNNYSYKDHDGHGWNFSPVKLRRNNLLVGISGSGKSRWLNSFSNICSYVFNNDQFRAGVWNLEFSAEEKEYAWEFSSNLEQGGSILSEVLKTKSGDVWEVIFSRDENHIYYGGQQLPRLAKNVTGINLLRDEDAIAPVYRAFGKVMRRNFNASDLIEAGAIIQFPSEPESFDFPANISAINPRLYFLKKRNKKMFDYVIDEFKSIFPFIINVDFTSGAELSDNNSFSPLLIFQERNVKESIYLHDLSSGLIKVLLIMTDISTLPEESIYIIDEYENSLGMNAINFLPDFIRSYSSKIQFITTSHHPYLINNIPIDDWVVFGRNGSNVAVRLGENLVSRYGASKQDAFVKLINDPFYRGY
SIO_010081: MSIP34_RS14560
subclass of: SO_0000673
so part of: MSIP34_RS14560
location: complement(1034..2119)
location: region:1034-2119:-1
so has part: feature:1034-2119:-1:exon

WP_012777800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1034-2119:-1:exon

MSIP34_RS14565
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14565
old locus tag: Msip34_2834
so part of: sequence
location: complement(2153..3346)
location: region:2153-3346:-1
so has part: feature:2153-3346:-1:exon
subclass of: SO_0000010

position:2153:-1
position: 2153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3346:-1
position: 3346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2153-3346:-1:exon

MSIP34_RS14565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14565
old locus tag: Msip34_2834
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019882331.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MALTDLAVKNADPKPKPYKLTDGNGLYLLIKPSGKYWRFDYRFNYKRKTLALGVYPDTTLAHAREKLDKARKLLANDPPVDPGENRKAERASRTAKNESCFEVIAREWVASYMLNKSDLHRQRVFRRLEVFMFPWIGAVSIDQLTAPEILKCIRRIQAQNKIETAHRTLQATGQVFRYAVQTGRAIRDVTHDLRGALPSHNVKHMASFTEPEQVAQLLKAIEGFTGSFTVQTALRLAPLVFVRPSELRKARWADIDLEKKEWRFRVSKTNIDHLVPLSTQAVELLEGIKPVSGHGEWVFMGGHDPKKPMSAAAINAALKRMGYNTQTEITGHGFRAMARTILHERLNFDPYVIEHQLAHKVPDALGAAYNRTKFIEQRKDMMQKWADFLTYLVIRAV
SIO_010081: MSIP34_RS14565
subclass of: SO_0000673
so part of: MSIP34_RS14565
location: complement(2153..3346)
location: region:2153-3346:-1
so has part: feature:2153-3346:-1:exon

WP_012777801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2153-3346:-1:exon

MSIP34_RS14770
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14770
old locus tag: Msip34_2835
so part of: sequence
location: complement(3711..4676)
location: region:3711-4676:-1
so has part: feature:3711-4676:-1:exon
subclass of: SO_0000010

position:3711:-1
position: 3711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4676:-1
position: 4676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3711-4676:-1:exon

MSIP34_RS14770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14770
old locus tag: Msip34_2835
inference: COORDINATES: protein motif:HMM:NF014074.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SppA protein
translation: MAVKEIVNSLSEALDVDIHLYSGQISREGYEQLSVILRDEAAHPRAILMLSTVGGDPHAGYRIARALCHHYPEGFSVMIPGLCKSAGTLICLGAKALIMGDRSELGPLDVQVRKKDELFELGSGLDTIQALSYMQSQAMSAFRTYLIELKADAGLSTRMAAEISTKLATGLFSPVYSQVDPVRLGELQRSIEVAYSYGNRLSKKSSNLKSDALNRLVSRYPAHGFVIDRSEARELFENVRSPAGDELDLLNFWYDNPNNDPSGQPMVINLTKLFGDEDDEQQQANVANDGPHEGDGGVDAVEQAIGEDRGNGDPVPIQDAD
SIO_010081: MSIP34_RS14770
subclass of: SO_0000673
so part of: MSIP34_RS14770
location: complement(3711..4676)
location: region:3711-4676:-1
so has part: feature:3711-4676:-1:exon

WP_012777802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3711-4676:-1:exon

MSIP34_RS14575
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14575
old locus tag: Msip34_2836
so part of: sequence
location: complement(4861..6021)
location: region:4861-6021:-1
so has part: feature:4861-6021:-1:exon
subclass of: SO_0000010

position:4861:-1
position: 4861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6021:-1
position: 6021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4861-6021:-1:exon

MSIP34_RS14575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14575
old locus tag: Msip34_2836
inference: COORDINATES: protein motif:HMM:NF017518.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zonular occludens toxin domain-containing protein
translation: MIHLITGLPGSGKSLYTLSTVKSRADKENRPVFYHGIPELTLDWQQLESADKWVDCPKGAIIVIDECQSTFRPRATGAAVPRHVSQLETHRHDGHDLYLITQHPMLVDSNLRRLVNYHYHVERFFGFAKSKIHEFHKVRENVDKSTKNSIESHFVYPKEVYTWYKSADMHTVKKRIPMRLMLMVLLPVLFFAIVWYGYRALTGISKSPDLDQLPTVEESGSAQPNQPAPPQFQKPIYSWGEAQRPRVPDLPFTAPKYDDITKPVMAPRIAAAVLIRGKCTAYTQQGTKIAMDEAVCLQFVENGMFQDFDDGSARFNKDQRDLNQQTMTPNALDDAQRPKGEPVAPAAVAVIPYPTDEESERSPANRVRESQSQNRYPNQPQPYAGS
SIO_010081: MSIP34_RS14575
subclass of: SO_0000673
so part of: MSIP34_RS14575
location: complement(4861..6021)
location: region:4861-6021:-1
so has part: feature:4861-6021:-1:exon

WP_012777803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4861-6021:-1:exon

MSIP34_RS14580
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14580
old locus tag: Msip34_2837
so part of: sequence
location: complement(6018..6317)
location: region:6018-6317:-1
so has part: feature:6018-6317:-1:exon
subclass of: SO_0000010

position:6018:-1
position: 6018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6317:-1
position: 6317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6018-6317:-1:exon

MSIP34_RS14580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14580
old locus tag: Msip34_2837
inference: COORDINATES: protein motif:HMM:NF022194.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2523 domain-containing protein
translation: MPLFISMFWGFAALSLKTLVGRVLVALAITYVTYQGLDVLLSGARQAALGLLTNVPADVIGAVGLLRLGESINIVFSAIAARYIVQGLTGGVLTRQVIK
SIO_010081: MSIP34_RS14580
subclass of: SO_0000673
so part of: MSIP34_RS14580
location: complement(6018..6317)
location: region:6018-6317:-1
so has part: feature:6018-6317:-1:exon

WP_012777804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6018-6317:-1:exon

MSIP34_RS14585
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14585
old locus tag: Msip34_2838
so part of: sequence
location: complement(6318..7634)
location: region:6318-7634:-1
so has part: feature:6318-7634:-1:exon
subclass of: SO_0000010

position:6318:-1
position: 6318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7634:-1
position: 7634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6318-7634:-1:exon

MSIP34_RS14585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14585
old locus tag: Msip34_2838
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAHFLRLILLLSMVLSSYAHAANEEIPSIIDYWSKDGMTVTKKPTPEESCQAYTAYSGVSYGSVTKVDNWKYFCNSKNGNIGNITAHEVCPGGVTPTILHTCLVPQCAAGQVRNPTTGTCQESCKSGFVSGVTGSKYFGSDGSTDCLSNCTYSIAVDMCIKLTNGQGACVGQYGNGTGAACSAATNNTALTPEANCMSQGKSFISVGGVTSCVSAGSQGSQPVTTKNNSSSSSNSSTKDANGNPTGSSSSNSTTNSSATFNGDGTVVVVTTTEKTNEDGTKETKTETKTVSQTSYCAENPTAAQCKAATDSDISGACDAVACKGDAIQCAMAKEQARRNCEWFKENAEWKSKGEALANGTDTTANPAEENNRTIVNLPTALDASSPISATGIQDRTFAVFGRSYTLRLSELNPYLAVVGYVFMALAYVAAGRILAGAV
SIO_010081: MSIP34_RS14585
subclass of: SO_0000673
so part of: MSIP34_RS14585
location: complement(6318..7634)
location: region:6318-7634:-1
so has part: feature:6318-7634:-1:exon

WP_012777805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6318-7634:-1:exon

MSIP34_RS14590
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14590
old locus tag: Msip34_2839
so part of: sequence
location: complement(7748..7954)
location: region:7748-7954:-1
so has part: feature:7748-7954:-1:exon
subclass of: SO_0000010

position:7748:-1
position: 7748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7954:-1
position: 7954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7748-7954:-1:exon

MSIP34_RS14590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14590
old locus tag: Msip34_2839
inference: COORDINATES: protein motif:HMM:NF017194.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: major capsid protein
translation: MKKVNLYSRKVAAYLAVGMTLAAAQAQAAIDVSAVTEKLGEGETAVAAIGGAILVVWAIKKVYSMIRG
SIO_010081: MSIP34_RS14590
subclass of: SO_0000673
so part of: MSIP34_RS14590
location: complement(7748..7954)
location: region:7748-7954:-1
so has part: feature:7748-7954:-1:exon

WP_012777806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7748-7954:-1:exon

MSIP34_RS14595
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14595
old locus tag: Msip34_2840
so part of: sequence
location: complement(7941..8315)
location: region:7941-8315:-1
so has part: feature:7941-8315:-1:exon
subclass of: SO_0000010

position:7941:-1
position: 7941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8315:-1
position: 8315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7941-8315:-1:exon

MSIP34_RS14595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14595
old locus tag: Msip34_2840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAFNRIASIHLSRSQVNAMALIMGLLLGGFLTFIWGMTDAYAAECLTDIGAGQYQIASPQPTEISECVYLIAQPKELTAGAWSLTVEQGQQLAAAIALLWAIGAVFRVLISLLKQKESQHEES
SIO_010081: MSIP34_RS14595
subclass of: SO_0000673
so part of: MSIP34_RS14595
location: complement(7941..8315)
location: region:7941-8315:-1
so has part: feature:7941-8315:-1:exon

WP_012777807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7941-8315:-1:exon

MSIP34_RS14600
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14600
old locus tag: Msip34_2841
so part of: sequence
location: complement(8302..9060)
location: region:8302-9060:-1
so has part: feature:8302-9060:-1:exon
subclass of: SO_0000010

position:8302:-1
position: 8302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9060:-1
position: 9060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8302-9060:-1:exon

MSIP34_RS14600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14600
old locus tag: Msip34_2841
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015830056.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDELRKSRSHGIRGLPRQKTEEEIEASQEENLRRAERRARQKVRFLIQSIGADHLLTLVYRENMTDSDKLNEDFTRFVRLVREKYPDWLYVGVKEYQERGALHMHVACVGKQDVHHLRKCWYIAIGGNADDAGENTKGQINVRYRKKRFSGQSPIFTCLQLAAYLSKYISKTFAHSRELGERRYKASRGIPAPKVMRQYLGAFAAIHKEQTFPVATQHTLGIADLMGVFDYQIWATKDLDILILRGSISESL
SIO_010081: MSIP34_RS14600
subclass of: SO_0000673
so part of: MSIP34_RS14600
location: complement(8302..9060)
location: region:8302-9060:-1
so has part: feature:8302-9060:-1:exon

WP_049757340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8302-9060:-1:exon

MSIP34_RS14605
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14605
old locus tag: Msip34_2842
so part of: sequence
location: complement(9250..9516)
location: region:9250-9516:-1
so has part: feature:9250-9516:-1:exon
subclass of: SO_0000010

position:9250:-1
position: 9250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9516:-1
position: 9516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9250-9516:-1:exon

MSIP34_RS14605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14605
old locus tag: Msip34_2842
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELKIQVLAISSRTGKSERGEYVRHDLQCFVDQVVGVIPSYDPEFKPEAGFYMASIGWSNYQGRLQPRIEKLTPISQTREHAREQVKA
SIO_010081: MSIP34_RS14605
subclass of: SO_0000673
so part of: MSIP34_RS14605
location: complement(9250..9516)
location: region:9250-9516:-1
so has part: feature:9250-9516:-1:exon

WP_012777809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9250-9516:-1:exon

MSIP34_RS14610
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14610
old locus tag: Msip34_2843
so part of: sequence
location: complement(9604..9810)
location: region:9604-9810:-1
so has part: feature:9604-9810:-1:exon
subclass of: SO_0000010

position:9604:-1
position: 9604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9810:-1
position: 9810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9604-9810:-1:exon

MSIP34_RS14610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14610
old locus tag: Msip34_2843
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008955695.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDTHFDASQLTVVPLMSRTKFAQHVGVTEDTVTGWINKGYLPVVEIGKYRLVNLALVTKNALEQSFYE
SIO_010081: MSIP34_RS14610
subclass of: SO_0000673
so part of: MSIP34_RS14610
location: complement(9604..9810)
location: region:9604-9810:-1
so has part: feature:9604-9810:-1:exon

WP_012777810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9604-9810:-1:exon