Methylovorus glucosetrophus SIP3-4 plasmid pMsip01, complete sequence.
type: Entry
definition: Methylovorus glucosetrophus SIP3-4 plasmid pMsip01, complete sequence.
sequence version: NC_012970.1
sequence date: 2023-02-22
sequence: sequence
division: CON
label: NC_012970.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598498
keyword: RefSeq
source: Methylovorus glucosetrophus SIP3-4
organism: Methylovorus glucosetrophus SIP3-4
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; Methylovorus.
reference: 1
references: 21622745
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001675.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4086190\nSource DNA and bacteria available from Ludmila Chistoserdova\n(milachis@u.washington.edu)\nContacts: Ludmila Chistoserdova (milachis@u.washington.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-PGF\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Methylovorus sp. SIP3-4\nGOLD Stamp ID :: Gi03952\nFunding Program :: DOE-CSP 2009\nOxygen Requirement :: Aerobe\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nGram Staining :: gram-\nBiotic Relationship :: Free living\nHabitat :: Fresh water\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 13:55:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,952\nCDSs (total) :: 2,894\nGenes (coding…

sequence
subclass of: SO_0000155
sequence length: 76680
topology: circular
so has quality: SO_0000988
location: 1..76680
location: region:1-76680:1
RO_0002162: 582744

NC_012970
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598498
type: BioSample
SIO_000068: biosample

1
title: Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae
author: Lapidus, A.
author: Clum, A.
author: Labutti, K.
author: Kaluzhnaya, M.G.
author: Lim, S.
author: Beck, D.A.
author: Glavina Del Rio, T.
author: Nolan, M.
author: Mavromatis, K.
author: Huntemann, M.
author: Lucas, S.
author: Lidstrom, M.E.
author: Ivanova, N.
author: Chistoserdova, L.
journal: J Bacteriol
volume: 193
issue: 15
pages: 3757-3764
year: 2011
pubmed: 21622745

21622745
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of plasmid 1 of Methylovorus sp. SIP3-4
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Clum, A.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Mikhailova, N.
author: Kayluzhnaya, M.
author: Chistoserdova, L.
journal: Unpublished

3
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Clum, A.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Mikailova, N.
author: Kayluzhnaya, M.
author: Chistoserdova, L.
journal: Submitted (13-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76680:1
position: 76680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-76680:1:source
so part of: sequence
organism: Methylovorus glucosetrophus SIP3-4
mol type: genomic DNA
strain: SIP3-4
plasmid: pMsip01

582744
type: Taxonomy
SIO_000068: taxonomy

MSIP34_RS14195
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14195
old locus tag: Msip34_2844
so part of: sequence
location: complement(330..1472)
location: region:330-1472:-1
so has part: feature:330-1472:-1:exon
subclass of: SO_0000010

position:330:-1
position: 330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1472:-1
position: 1472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330-1472:-1:exon

MSIP34_RS14195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14195
old locus tag: Msip34_2844
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006889572.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQDLLVREALVKYKSSVSILKKGYEQEKFRIEQICRSPLGSLVVRNATSVDIASFRDDRLSQVNQKTKKPIAASTVRLELSLLSSFFDICRIEWGLCESNPVTNVRKPKAPPGRDRRLTPREDRQILRYAHSHSNQEFYSIVILALETAMRQSEIIKLCWEHLDLKSRIAHLPDTKNGSKRDVPLSAKARDALIRLGVKSKGNVFTYTSSGIKSTWRFMLGKLGIEDLHFHDMRHEAISRFFELGSLDMMEIAAISGHKSLSMLKRYTHLKAHKLVRKLDGNKHKGKQVIIDHLIPYPAQILRHEDQVTLKILDFEGIVLTGTSSSVIIRAAQDVLLRHLMTLIKESKRIPPPDQYLELVDESQLVMIDPMGGGEWVTHH
SIO_010081: MSIP34_RS14195
subclass of: SO_0000673
so part of: MSIP34_RS14195
location: complement(330..1472)
location: region:330-1472:-1
so has part: feature:330-1472:-1:exon

WP_012777666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:330-1472:-1:exon

MSIP34_RS14200
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14200
old locus tag: Msip34_2845
so part of: sequence
location: complement(1475..1708)
location: region:1475-1708:-1
so has part: feature:1475-1708:-1:exon
subclass of: SO_0000010

position:1475:-1
position: 1475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1708:-1
position: 1708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1475-1708:-1:exon

MSIP34_RS14200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14200
old locus tag: Msip34_2845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019366923.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKNKRRSFGKILRQIRVQSGFTQEALGLESGIDRSYISLIERGESSPTLDTILQLCTALDISLSYLAAKYESEMQQE
SIO_010081: MSIP34_RS14200
subclass of: SO_0000673
so part of: MSIP34_RS14200
location: complement(1475..1708)
location: region:1475-1708:-1
so has part: feature:1475-1708:-1:exon

WP_012777667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1475-1708:-1:exon

MSIP34_RS14720
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14720
old locus tag: Msip34_2846
so part of: sequence
location: complement(1850..2935)
location: region:1850-2935:-1
so has part: feature:1850-2935:-1:exon
subclass of: SO_0000010

position:1850:-1
position: 1850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2935:-1
position: 2935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1850-2935:-1:exon

MSIP34_RS14720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14720
old locus tag: Msip34_2846
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRNRVLSLTRNVIPYVKELRVFTDSVLGCILMQQLDYWFERYPGGFYKFLEPSEHPKYVIGQSWSEEIGVSVAEFRTAFDRIGTRWKSKTEFENAPDKFLGKFYASYQDKRANLTFYYRNHELVDAALDELLAHLGPVSGSRGGEGAESQGVKMALITDLKPHAEQRSTGDEESQSPVDKEPSFTGANEIQPPVGVGMKSLGVQDAHLQELGNPQLNNTENTNTEIKQRLQQPQTLGQAENSGCSSFIYPLRITKAEQESLMQVIKPLDAITAQAVLDEVAGLRRSGKVRVSIIALATGLVKKSQDGVFIPAAGLPIVAERESAVKEQQVKIQRSEPTTDSKSRIPLRQRLAEAGIALKGF
SIO_010081: MSIP34_RS14720
subclass of: SO_0000673
so part of: MSIP34_RS14720
location: complement(1850..2935)
location: region:1850-2935:-1
so has part: feature:1850-2935:-1:exon

WP_148211273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1850-2935:-1:exon

MSIP34_RS14210
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14210
old locus tag: Msip34_2847
so part of: sequence
location: complement(3117..3326)
location: region:3117-3326:-1
so has part: feature:3117-3326:-1:exon
subclass of: SO_0000010

position:3117:-1
position: 3117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3326:-1
position: 3326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3117-3326:-1:exon

MSIP34_RS14210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14210
old locus tag: Msip34_2847
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAFAEITRIGRRRLRMTQREFSEDVLHVPLSTYQGWEKKDSKEPNQATQNFVLVALAHPEIVKAVLEKT
SIO_010081: MSIP34_RS14210
subclass of: SO_0000673
so part of: MSIP34_RS14210
location: complement(3117..3326)
location: region:3117-3326:-1
so has part: feature:3117-3326:-1:exon

WP_012777669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3117-3326:-1:exon

MSIP34_RS14215
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14215
old locus tag: Msip34_2849
so part of: sequence
location: 4133..5461
location: region:4133-5461:1
so has part: feature:4133-5461:1:exon
subclass of: SO_0000010

position:4133:1
position: 4133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5461:1
position: 5461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4133-5461:1:exon

MSIP34_RS14215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14215
old locus tag: Msip34_2849
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSDKNIKKQPLPALSKPDFRLKKAVEAIAIRPTRGRITMLVRKSFNVLLHQAMEQGTDKEVYKIRLAELIANVSPDSNDYETFKTYLRKMNATQVEWHSTSDGGAENWGVSSLLAEAEVINSKKDGYVLEYSFAPKIKKRLLDPEVYTHIIFRFQSVLRSNASLALYEICSRYATNPSNLTMRHPWQWWRPVLTGTPDQEAEGEYGEYKYFKRDVLKPALNEVNKLTDLDVELIEHKIGRRVDEVQFRVTAKAQTNLDLGQGPLIDSSLLQRIVGLGFRPDAAREIYTEFEESLIRACLEKTEDRIKNVSLGPLTSAVAYFRTLLKDKNNIPQLTLPKSKLKEENPDEVKKKLRDAYTNHQRATAQEMFNEANEDEQRRWLDQFELQYLPNNAQVAKAYAKNGIEGKIAQMAFFTWLATSTWGGEPSESDLLTFAIESKRVG
SIO_010081: MSIP34_RS14215
subclass of: SO_0000673
so part of: MSIP34_RS14215
location: 4133..5461
location: region:4133-5461:1
so has part: feature:4133-5461:1:exon

WP_012777671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4133-5461:1:exon

MSIP34_RS14220
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14220
old locus tag: Msip34_2850
so part of: sequence
location: complement(5699..6013)
location: region:5699-6013:-1
so has part: feature:5699-6013:-1:exon
subclass of: SO_0000010

position:5699:-1
position: 5699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6013:-1
position: 6013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5699-6013:-1:exon

MSIP34_RS14220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14220
old locus tag: Msip34_2850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKITSNLIDLFENSEGLQKLIQGFQGNLRKQLDIWGMKDKELIEEVKKLIAESERLKIQLQHILEMESGANQDFENIQNDFVKLLIRAESLASNIISKSLSPEL
SIO_010081: MSIP34_RS14220
subclass of: SO_0000673
so part of: MSIP34_RS14220
location: complement(5699..6013)
location: region:5699-6013:-1
so has part: feature:5699-6013:-1:exon

WP_012777672.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5699-6013:-1:exon

MSIP34_RS14225
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14225
old locus tag: Msip34_2851
so part of: sequence
location: complement(6054..7082)
location: region:6054-7082:-1
so has part: feature:6054-7082:-1:exon
subclass of: SO_0000010

position:6054:-1
position: 6054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7082:-1
position: 7082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6054-7082:-1:exon

MSIP34_RS14225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14225
old locus tag: Msip34_2851
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSFSLSQFAGNTSNKHRSASRTFPLRLDGFNLDKIPHTITGVDLSAPEQAPVTVFLRPRDSKEGEGARPEIINFVEDAIKKAEKGGDAAELEAVRSNPLSKLFTEPGGVILVEGGFTDEESGHISASWLRLLKRHSDVVSLYTNVWARVNKPYTREGATRLTASIDILHPEQKVRAQNLSDLNSFLMDVVGRISGGESIAVVKLSSSTATEDCSVRTVKAQRISDGYGEYVWDAPEVVVDRFWDSLDAEWISSLNEALITGSVIAEIYPGARYYFVKDSLEQIARKGEKHYSRFVLPNKEETGFLRCTVTLRSHAGSDSEKYPTGCFPIHPFTDRPLDLVNL
SIO_010081: MSIP34_RS14225
subclass of: SO_0000673
so part of: MSIP34_RS14225
location: complement(6054..7082)
location: region:6054-7082:-1
so has part: feature:6054-7082:-1:exon

WP_012777673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6054-7082:-1:exon

MSIP34_RS14230
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14230
old locus tag: Msip34_2852
so part of: sequence
location: complement(7097..7837)
location: region:7097-7837:-1
so has part: feature:7097-7837:-1:exon
subclass of: SO_0000010

position:7097:-1
position: 7097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7837:-1
position: 7837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7097-7837:-1:exon

MSIP34_RS14230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14230
old locus tag: Msip34_2852
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSESNGLTKVEILWTEIIELSRRLDEMVSKIVSAESTVGNTVTSLEETMAALLEKMVSISNSADGVLSEKQAELNKLIELAMQEAANKAAQRDLDVVEMISEGVELRLKEMQSLFSDELSKSIHLNSMHIQAEASKHLMRATNAIDIAKSIDKAVAISIAIILVIVFGACAAYGGWHLAFLHYANSSKQADAFITTPEGKAALEFSRLNDVNAMLDCKGFNTTKQAGHTYCLPLDAKRNVSGWRID
SIO_010081: MSIP34_RS14230
subclass of: SO_0000673
so part of: MSIP34_RS14230
location: complement(7097..7837)
location: region:7097-7837:-1
so has part: feature:7097-7837:-1:exon

WP_012777674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7097-7837:-1:exon

MSIP34_RS14235
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: stbB
locus tag: MSIP34_RS14235
old locus tag: Msip34_2853
so part of: sequence
location: complement(7862..8629)
location: region:7862-8629:-1
so has part: feature:7862-8629:-1:exon
subclass of: SO_0000010

position:7862:-1
position: 7862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8629:-1
position: 8629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7862-8629:-1:exon

MSIP34_RS14235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: stbB
locus tag: MSIP34_RS14235
old locus tag: Msip34_2853
inference: COORDINATES: protein motif:HMM:NF041292.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: StbB family protein
translation: MHKKVVVLNVSGNVGKTTISSQLLYPRMRDASGKFPTLVEVETYNKSAAGLPGITAIQKTGSQYRDVYELAYEDPALIVDVGASNIVPFFEQLTTYRGSAEVFDMFIVPTTPGSKEMHDTLKTIQLLRMFGVGDDRLRVVFTRVASDVVDEFKLLYNASATDTHSFNFDKNLTIFETELFKELGELGETVDSLLSDDSDYPTLIRAAETPQDKKRLVKRDMALRMARSVNDNLDFVFSHLALQVAEKPTVKPVKK
SIO_010081: MSIP34_RS14235
subclass of: SO_0000673
so part of: MSIP34_RS14235
location: complement(7862..8629)
location: region:7862-8629:-1
so has part: feature:7862-8629:-1:exon

WP_012777675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7862-8629:-1:exon

MSIP34_RS14240
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14240
old locus tag: Msip34_2854
so part of: sequence
location: complement(8738..9415)
location: region:8738-9415:-1
so has part: feature:8738-9415:-1:exon
subclass of: SO_0000010

position:8738:-1
position: 8738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9415:-1
position: 9415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8738-9415:-1:exon

MSIP34_RS14240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14240
old locus tag: Msip34_2854
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNESIEQRVMHKVGRNEIQSAREALLLKLLSPDTDVKIRQRQFIKELMAEIKALRELGIGFDEIAETLREFGCKLSGETLRTYYYEEKRDENEEALAEVVNRYRSAAETAAEAFELTVGRDLNTLVQQALEGATARRKAPSPPVLQVTETEPTAASGAESARRVPEGPEVKVERGRIQELLEKHVGEAKTQHTTAAPPTPTAKDVNSLMNSNIDLTAIPDRAKPE
SIO_010081: MSIP34_RS14240
subclass of: SO_0000673
so part of: MSIP34_RS14240
location: complement(8738..9415)
location: region:8738-9415:-1
so has part: feature:8738-9415:-1:exon

WP_012777676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8738-9415:-1:exon

MSIP34_RS14250
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14250
old locus tag: Msip34_2855
so part of: sequence
location: 10396..10620
location: region:10396-10620:1
so has part: feature:10396-10620:1:exon
subclass of: SO_0000010

position:10396:1
position: 10396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10620:1
position: 10620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10396-10620:1:exon

MSIP34_RS14250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14250
old locus tag: Msip34_2855
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTARKVITRSGKTVSGNTPSHQMRKMIHWESALERDAIQHLEFSHTVKKYWVQPMKLYFDTNKQEFSRRQEIKM
SIO_010081: MSIP34_RS14250
subclass of: SO_0000673
so part of: MSIP34_RS14250
location: 10396..10620
location: region:10396-10620:1
so has part: feature:10396-10620:1:exon

WP_012777677.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10396-10620:1:exon

MSIP34_RS14255
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14255
old locus tag: Msip34_2856
so part of: sequence
location: 10714..11106
location: region:10714-11106:1
so has part: feature:10714-11106:1:exon
subclass of: SO_0000010

position:10714:1
position: 10714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11106:1
position: 11106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10714-11106:1:exon

MSIP34_RS14255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14255
old locus tag: Msip34_2856
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRQGELAKDKNCSKLNEYIYLFLSMLFKRKDVVKSEKIEIRLTTDEKAEVKRIALAEDLPVSELFLRTLRKRKAGKSNTHRIVNKLTELIDAIRTVHEQFPENQEAQKAVLNEVAIVLRDIPRRITPNSE
SIO_010081: MSIP34_RS14255
subclass of: SO_0000673
so part of: MSIP34_RS14255
location: 10714..11106
location: region:10714-11106:1
so has part: feature:10714-11106:1:exon

WP_148211276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10714-11106:1:exon

MSIP34_RS14725
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14725
old locus tag: Msip34_2857
so part of: sequence
location: 11150..12223
location: region:11150-12223:1
so has part: feature:11150-12223:1:exon
subclass of: SO_0000010

position:11150:1
position: 11150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12223:1
position: 12223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11150-12223:1:exon

MSIP34_RS14725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14725
old locus tag: Msip34_2857
inference: COORDINATES: protein motif:HMM:NF037106.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKKNIDMLPELSYSFLETNEPGKQVIAIRRGMAGYQLTTFDDKNPEHAKLVVKKMNEKLGVNPIQAECMLAGSMFGWDSKAADYQYAVAQLGANPHLSAFDPAGRVWSPVEALSQAQAALPDNGMALIDGVSPELIRLIEDTLERAKDGEVSNDEIMGVLIKAREALPGAWENHGGSPVELLEEIDRAISGNSTNIFNAQNIVKEIASKFGISLTAWVPNDAFAGPWEFADAEFEGKSIRLGASGGGVVQVNRDPFTPTGDRVPNVTIDAIEASIMAAANIHFAKPDRTYVGTLIHQADKSIAVQNVGKGLYVAHDSQVSKGLKKGTSYTIKYDSQGKVAQIKPKTKGSEELTQGI
SIO_010081: MSIP34_RS14725
subclass of: SO_0000673
so part of: MSIP34_RS14725
location: 11150..12223
location: region:11150-12223:1
so has part: feature:11150-12223:1:exon

WP_012777679.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11150-12223:1:exon

MSIP34_RS14730
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14730
old locus tag: Msip34_2858
so part of: sequence
location: 12245..14812
location: region:12245-14812:1
so has part: feature:12245-14812:1:exon
subclass of: SO_0000010

position:12245:1
position: 12245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14812:1
position: 14812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12245-14812:1:exon

MSIP34_RS14730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14730
old locus tag: Msip34_2858
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraI/MobA(P) family conjugative relaxase
translation: MIVKIAPKRRDSQSSFDKLTTYITSEFERDNIDIHSIGFARLTQYITRESVPDILTGLTVEKTIGIEIGNLGSLESAAEQMRGIAKENPRVEDPVFHYILSWPSHERPEVKDMLDAARDSIAALGMAEHQYIIAIHANTDNLHAHIELNRIHPKTHKAKHIEWARKTLHLAARKAELKYGWSHDKGLYEVQVVNGQKVILERENPKKQKAEGRANLFETWNGEQSFETWCRESPTHGLKKFLPTFSNWQDLHSFLAAYGIEIIDSGGGGMQVRTLTEDGEKPVIVSASKAFRFLKRKDLEGRFGPFMKARTSGETDNGTGLPSIEDIASDLAKAGNYLLATGSIDPAAQDAIRTNFANTAAVTLAARPGNEQDHLGRGRSFNGREGELNESEYLAAIKHDLATAGGNLESTGHLDPDFTGAARSRRAAIAESLATFIDQDRSTGQDRASRGNSSGADRQLSYKRDPAKRLLAKAERAERRRELYARFQKDKTIHSAVRSKIMRETRDDQKKSIATSKVRYQSDKRKILSSSMSEAEKKQALALLAHQYAVQKELLSHKAQEEINTLRKTFKDLPVRSWRSWVEDLASQGDEAAISALRGMIYQEGRLRKKKERDSNAGKGAEDCEIIAPAGASLDPKMAADLRYRLFEGRLFFRFDDGRAAFTDNGETISWDRALVDDDALRLSLQHAAVKWGNRLTVEGGDAIFQSRILRMSGELGITIINLQRKVSPAAPMATDLHQVEAKAKSTPALPSRTLPEVMLQDPVRQNIVELLSKQFPGVTVRDVAGEEVRNSTFIGKVVLAKDGYVAQQTDPKTIVLHSAMNKVAGSLMQNKNFKVSYKDGMRTVSEVISKSKNR
SIO_010081: MSIP34_RS14730
subclass of: SO_0000673
so part of: MSIP34_RS14730
location: 12245..14812
location: region:12245-14812:1
so has part: feature:12245-14812:1:exon

WP_012777680.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12245-14812:1:exon

MSIP34_RS14735
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14735
old locus tag: Msip34_2859
so part of: sequence
location: 14846..15445
location: region:14846-15445:1
so has part: feature:14846-15445:1:exon
subclass of: SO_0000010

position:14846:1
position: 14846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15445:1
position: 15445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14846-15445:1:exon

MSIP34_RS14735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14735
old locus tag: Msip34_2859
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRVTVTDRLRDVVKASKQGVFLRRDFDELGNYRQVGRALEQLQSEEIIIHAGHGVYTKPSVARNPELMVERLKKRLGKRINRRIEIGSSVLHVGKKVVWENAQTRLDRFKLQVARVLLQRHPVSEIRKKSLENLSRWKANGVWNPGYQEWENLLLHASDARIKEILYSDVEEPSNRLRQSPPYAGLLDQKTLEDLRAKK
SIO_010081: MSIP34_RS14735
subclass of: SO_0000673
so part of: MSIP34_RS14735
location: 14846..15445
location: region:14846-15445:1
so has part: feature:14846-15445:1:exon

WP_012777681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14846-15445:1:exon

MSIP34_RS14740
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14740
old locus tag: Msip34_2860
so part of: sequence
location: 15432..16202
location: region:15432-16202:1
so has part: feature:15432-16202:1:exon
subclass of: SO_0000010

position:15432:1
position: 15432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16202:1
position: 16202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15432-16202:1:exon

MSIP34_RS14740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14740
old locus tag: Msip34_2860
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRSDIEHLLRAAGDVLNETAFIVVGSQSILGKYPDAPAELLQSAEADLIAKNKPEQNHKLEVLGELSPFHDMYGYFADPVDRNTAILPKGWEGRLVNLKTPATNGVTGLCLDPHDLFVSKMAAGRDKDLIYCRVMIEHNLVGKERVLALAATLKNTPDDPERNKRILMRIERMYEGVDVANTIHVDIEKGYYTGKVISVSDTVVQQEAGRGKMIFHEAARLDIMPIRGRSYDIKYREGSAKVEQKVLAKDKKLEL
SIO_010081: MSIP34_RS14740
subclass of: SO_0000673
so part of: MSIP34_RS14740
location: 15432..16202
location: region:15432-16202:1
so has part: feature:15432-16202:1:exon

WP_012777682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15432-16202:1:exon

MSIP34_RS14280
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: umuC
locus tag: MSIP34_RS14280
old locus tag: Msip34_2861
so part of: sequence
location: complement(16205..17482)
location: region:16205-17482:-1
so has part: feature:16205-17482:-1:exon
subclass of: SO_0000010

position:16205:-1
position: 16205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17482:-1
position: 17482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16205-17482:-1:exon

MSIP34_RS14280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: umuC
locus tag: MSIP34_RS14280
old locus tag: Msip34_2861
EC number: 2.7.7.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014707330.1
GO function: GO:0003684 - damaged DNA binding [Evidence IEA]
GO process: GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: translesion error-prone DNA polymerase V subunit UmuC
translation: MHRAIALVDVNAMYWSCHRVFNPSLEGKAGIVLTNNDGCAVSRNDLAKQLGIKMGEPWFQIKANPKYKDVVAFSSTYALYASMSKRFTNLLAEFSPHQEIYSIDECFLDLTGMRGRQIQRGLNIRHRIKNEVGLPVCVGIGSTKTLAKLANHIAKKFPHFEGVVDLNEWEPHQMVAMFTMLDVGQVWGVGRRYAERLAALDMKSVMDLKLADPEFIRQQFSVVLERTVRELNGEACLDLEAVREDKKQIISSRSFGRQIEDLPALVNAVSSFVSRAAEKLRLQNSYAGVISVEVETNRFNPDPYSKYGKRACIRLPAPTDDTLKLNHVAQWILKKIYKPGFRYQRAGIMLDEIVPAGGGQVDLFGYQPAIGKRDNLSAVVDEINSRMGKNAVRVGTMGFSMDWDMKQDLLSPFYTTRIEDLPVAR
SIO_010081: MSIP34_RS14280
subclass of: SO_0000673
so part of: MSIP34_RS14280
location: complement(16205..17482)
location: region:16205-17482:-1
so has part: feature:16205-17482:-1:exon

WP_012777683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16205-17482:-1:exon

MSIP34_RS14285
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: umuD
locus tag: MSIP34_RS14285
old locus tag: Msip34_2862
so part of: sequence
location: complement(17485..17970)
location: region:17485-17970:-1
so has part: feature:17485-17970:-1:exon
subclass of: SO_0000010

position:17485:-1
position: 17485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17970:-1
position: 17970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17485-17970:-1:exon

MSIP34_RS14285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: umuD
locus tag: MSIP34_RS14285
old locus tag: Msip34_2862
EC number: 2.7.7.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012667839.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: translesion error-prone DNA polymerase V autoproteolytic subunit
translation: MNERTEKVADFITAYNTKLARSTAVNVSQVYSLANGQPLSLPYFSSTVHAGFENPANDHIEEEIDPNGYLIDDPNATILIRVKGDSMIEAEIFEDDILIVNRKRRARAGDIVVAELDGGFTVKYLGKHCLIPANKKYPVIKFQDMQELRLIGVVTGKMKRF
SIO_010081: MSIP34_RS14285
subclass of: SO_0000673
so part of: MSIP34_RS14285
location: complement(17485..17970)
location: region:17485-17970:-1
so has part: feature:17485-17970:-1:exon

WP_012777684.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17485-17970:-1:exon

MSIP34_RS14290
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14290
old locus tag: Msip34_2863
so part of: sequence
location: complement(18016..18666)
location: region:18016-18666:-1
so has part: feature:18016-18666:-1:exon
subclass of: SO_0000010

position:18016:-1
position: 18016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18666:-1
position: 18666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18016-18666:-1:exon

MSIP34_RS14290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14290
old locus tag: Msip34_2863
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013294328.1
GO function: GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SOS response-associated peptidase family protein
translation: MCSRYTPLKTESLLNEFFGVSGIDQPVKDELFPMYLGPFIRRHEFADVGDEAVPSRELLIGSFGMVPQWAEPKLARQTYNARSETVHEKPSFRDAWKRSRHCIIPAAAIYEPDWRTGKAIPTKIVRSDGKPMGIAGLWTEKKLADNQILHSFTMLTINADDHPFMRNYHKPEDEKRMIVILLDDEYEAWLTAKPEESRYFLRQFPADQMTVSPPTD
SIO_010081: MSIP34_RS14290
subclass of: SO_0000673
so part of: MSIP34_RS14290
location: complement(18016..18666)
location: region:18016-18666:-1
so has part: feature:18016-18666:-1:exon

WP_012777685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18016-18666:-1:exon

MSIP34_RS14295
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14295
old locus tag: Msip34_2864
so part of: sequence
location: complement(18713..19621)
location: region:18713-19621:-1
so has part: feature:18713-19621:-1:exon
subclass of: SO_0000010

position:18713:-1
position: 18713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19621:-1
position: 19621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18713-19621:-1:exon

MSIP34_RS14295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14295
old locus tag: Msip34_2864
inference: COORDINATES: protein motif:HMM:NF012422.2
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LuxR C-terminal-related transcriptional regulator
translation: MAIKNSDMRNITPRGNKWRVRVMKHGVWRTRTFFNLTSAKRFRDNLLSLTTFDTDLPYSDFTNFGMLMHIEQSAQPEQLFPLEEIIHTSMHIDSIIICGIYFLIQDSVVVYIGQSTDVLARLKAHRMAKLIQFTSVTIIPAERKLLNELEKRYIVHLVPIHNQVHKKTAEKKLLEDQIKKLDPTFSDSALSMIEIEVLRCYLAGDSLYSIGEDLGLTVPSVSIYLKNATSKLGVSTFRQTKLKCISMGIIQNPFLKSKLERPIPLSQRIKKMEISKSKAKYLKRGRPTKAEQLRRAGLLPEL
SIO_010081: MSIP34_RS14295
subclass of: SO_0000673
so part of: MSIP34_RS14295
location: complement(18713..19621)
location: region:18713-19621:-1
so has part: feature:18713-19621:-1:exon

WP_012777686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18713-19621:-1:exon

MSIP34_RS15210
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS15210
so part of: sequence
location: complement(19957..20190)
location: region:19957-20190:-1
so has part: feature:19957-20190:-1:exon
subclass of: SO_0000010

position:19957:-1
position: 19957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20190:-1
position: 20190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19957-20190:-1:exon

MSIP34_RS15210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS15210
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNIDDFNIGATYAAQEEDFVDPLTDERTVGRVRIFTVLEPAEYGLRVKNTEGAVQLLHPNTLVRAVPVDNLTIDQAV
SIO_010081: MSIP34_RS15210
subclass of: SO_0000673
so part of: MSIP34_RS15210
location: complement(19957..20190)
location: region:19957-20190:-1
so has part: feature:19957-20190:-1:exon

WP_041370695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19957-20190:-1:exon

MSIP34_RS14310
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14310
old locus tag: Msip34_2867
so part of: sequence
location: complement(20187..20471)
location: region:20187-20471:-1
so has part: feature:20187-20471:-1:exon
subclass of: SO_0000010

position:20187:-1
position: 20187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20471:-1
position: 20471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20187-20471:-1:exon

MSIP34_RS14310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14310
old locus tag: Msip34_2867
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009522294.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHFLLIFAATFIVVFALGFQSLTVNRGHYMLAFFNSFLISAANLAILKFVPESSGVLDYIAYMTGGPLGIVTSMWVFQKLLPRLERLSLQGTGK
SIO_010081: MSIP34_RS14310
subclass of: SO_0000673
so part of: MSIP34_RS14310
location: complement(20187..20471)
location: region:20187-20471:-1
so has part: feature:20187-20471:-1:exon

WP_012777689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20187-20471:-1:exon

MSIP34_RS14315
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14315
old locus tag: Msip34_2868
so part of: sequence
location: complement(20648..21097)
location: region:20648-21097:-1
so has part: feature:20648-21097:-1:exon
subclass of: SO_0000010

position:20648:-1
position: 20648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21097:-1
position: 21097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20648-21097:-1:exon

MSIP34_RS14315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14315
old locus tag: Msip34_2868
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITKQNDSWTHRNDVVIQINPAKRKKVWLSLSFIGVLILLGILSTDQNSPLMKWAKHKEEMNERNALAPTMRALAESGKPDALIWIAKNFPGEKTQELETLIANGNTEAMMVIAKAKFEANDVAGAKQLIAKAASLGNVMAINDMTRLK
SIO_010081: MSIP34_RS14315
subclass of: SO_0000673
so part of: MSIP34_RS14315
location: complement(20648..21097)
location: region:20648-21097:-1
so has part: feature:20648-21097:-1:exon

WP_012777690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20648-21097:-1:exon

MSIP34_RS14320
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14320
old locus tag: Msip34_2869
so part of: sequence
location: complement(21186..22427)
location: region:21186-22427:-1
so has part: feature:21186-22427:-1:exon
subclass of: SO_0000010

position:21186:-1
position: 21186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22427:-1
position: 22427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21186-22427:-1:exon

MSIP34_RS14320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14320
old locus tag: Msip34_2869
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017362440.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific DNA-methyltransferase
translation: MSKKKTMKCELDLFSEILHAYPSEGDRGLSNASLYERIADRAQLSPEDLNARAPVGESKQPVNLLKRRIRWFQQTLKHAGILERVDGERGVWKLTNPAGDGLRKINPGVSVLGFSTKLGLAILGSCDTVFSRLDTPIHLCVTSPPYPLASQRAYGNPNEGDFVDWLCRSIEPVVKNLVNGGSICLNIGNDIFISGSPARSLYQERLLLALHDRLGLSLMDRLVWHNPSKPPGPVQWASLNRVQLNVAWEPVYWLTNNPNAVRSDNRRVLQEHTERHLNFIRNGGIKARSSASDGAYIKRIGAYSTETLGRIPRNVLTFGHACQDQRNYKQFAKNVGLPAHGAAMPLSLASFLIEFLSRPDDLVVDPFGGSFSTAKAAEQLGRRWLSTECMIEYVLGASVRFKEFDGFGLSLNG
SIO_010081: MSIP34_RS14320
subclass of: SO_0000673
so part of: MSIP34_RS14320
location: complement(21186..22427)
location: region:21186-22427:-1
so has part: feature:21186-22427:-1:exon

WP_012777691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21186-22427:-1:exon

MSIP34_RS14745
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14745
old locus tag: Msip34_2870
so part of: sequence
location: complement(22438..22959)
location: region:22438-22959:-1
so has part: feature:22438-22959:-1:exon
subclass of: SO_0000010

position:22438:-1
position: 22438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22959:-1
position: 22959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22438-22959:-1:exon

MSIP34_RS14745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14745
old locus tag: Msip34_2870
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDHLEHIVMKTIEAANGGYCRLSKGEKLAAALILNRHDWLEGMDYSVAQALEHIGPEWVSLIPAAAKQVALATGELMRIEVRAREESILTSLDTIDLNATLVTYGESPGYRRISMVMDVQPIGKETTFRLSMGLGVQDSATLARHIKEVHQRAWLRGEPLDVKPGEIRPKWID
SIO_010081: MSIP34_RS14745
subclass of: SO_0000673
so part of: MSIP34_RS14745
location: complement(22438..22959)
location: region:22438-22959:-1
so has part: feature:22438-22959:-1:exon

WP_012777692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22438-22959:-1:exon

MSIP34_RS14330
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14330
old locus tag: Msip34_2871
so part of: sequence
location: complement(22968..23363)
location: region:22968-23363:-1
so has part: feature:22968-23363:-1:exon
subclass of: SO_0000010

position:22968:-1
position: 22968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23363:-1
position: 23363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22968-23363:-1:exon

MSIP34_RS14330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14330
old locus tag: Msip34_2871
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTLNKMVFSLLLATTVSAGALYWGISHFSKTESLIFEGKPSKDSPSVIEAKVVSNKDGVFLKVNYREGKIFPAINAPVSIANKLGGYEVERLDTHEKYLMMPVTKFGSLYICTECVHEQPGKMIPMYWVKD
SIO_010081: MSIP34_RS14330
subclass of: SO_0000673
so part of: MSIP34_RS14330
location: complement(22968..23363)
location: region:22968-23363:-1
so has part: feature:22968-23363:-1:exon

WP_012777693.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22968-23363:-1:exon

MSIP34_RS14335
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14335
old locus tag: Msip34_2872
so part of: sequence
location: complement(23376..23750)
location: region:23376-23750:-1
so has part: feature:23376-23750:-1:exon
subclass of: SO_0000010

position:23376:-1
position: 23376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23750:-1
position: 23750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23376-23750:-1:exon

MSIP34_RS14335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14335
old locus tag: Msip34_2872
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKVFVLLMIAATMLLTGCNSSTSLTGEYATKEGGRADIKVTQKDGKYYGAVQFRNKWEEVELRPASRDETAKLSGTANPDIIDNALVGNGFLIAHVKPGTTGPMFRTGYVAIIGFIPAVLYKK
SIO_010081: MSIP34_RS14335
subclass of: SO_0000673
so part of: MSIP34_RS14335
location: complement(23376..23750)
location: region:23376-23750:-1
so has part: feature:23376-23750:-1:exon

WP_148211277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23376-23750:-1:exon

MSIP34_RS14340
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14340
old locus tag: Msip34_2873
so part of: sequence
location: complement(23843..24061)
location: region:23843-24061:-1
so has part: feature:23843-24061:-1:exon
subclass of: SO_0000010

position:23843:-1
position: 23843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24061:-1
position: 24061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23843-24061:-1:exon

MSIP34_RS14340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14340
old locus tag: Msip34_2873
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGLEFETWIKRIGLKKLDVAKKLGVDPDTITAKCKGDQVPGLYAYALLGLASEKRLQDINELTEILGIIGS
SIO_010081: MSIP34_RS14340
subclass of: SO_0000673
so part of: MSIP34_RS14340
location: complement(23843..24061)
location: region:23843-24061:-1
so has part: feature:23843-24061:-1:exon

WP_012777695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23843-24061:-1:exon

MSIP34_RS14345
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14345
so part of: sequence
location: complement(24058..24276)
location: region:24058-24276:-1
so has part: feature:24058-24276:-1:exon
subclass of: SO_0000010

position:24058:-1
position: 24058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24276:-1
position: 24276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24058-24276:-1:exon

MSIP34_RS14345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRKSLIEVLNVSMADLMPSKGIAIVLAGDSLPLRISERLHQAIREIAAHTGQTISEVASSLRDEINAEEQL
SIO_010081: MSIP34_RS14345
subclass of: SO_0000673
so part of: MSIP34_RS14345
location: complement(24058..24276)
location: region:24058-24276:-1
so has part: feature:24058-24276:-1:exon

WP_041370700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24058-24276:-1:exon

MSIP34_RS14350
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14350
old locus tag: Msip34_2874
so part of: sequence
location: complement(24273..24599)
location: region:24273-24599:-1
so has part: feature:24273-24599:-1:exon
subclass of: SO_0000010

position:24273:-1
position: 24273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24599:-1
position: 24599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24273-24599:-1:exon

MSIP34_RS14350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14350
old locus tag: Msip34_2874
inference: COORDINATES: protein motif:HMM:NF014505.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MTIKYSPTRGDIVLFHHPSAATDSPESLALVLSPKDYNIKTGLILCCPISSKRLGYPFEVADEAVAGAILADQIRSIPWHPAMLVGVGQVKNKTLGEVGELITLLIGK
SIO_010081: MSIP34_RS14350
subclass of: SO_0000673
so part of: MSIP34_RS14350
location: complement(24273..24599)
location: region:24273-24599:-1
so has part: feature:24273-24599:-1:exon

WP_012777696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24273-24599:-1:exon

MSIP34_RS14355
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14355
old locus tag: Msip34_2876
so part of: sequence
location: complement(24917..26284)
location: region:24917-26284:-1
so has part: feature:24917-26284:-1:exon
subclass of: SO_0000010

position:24917:-1
position: 24917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26284:-1
position: 26284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24917-26284:-1:exon

MSIP34_RS14355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14355
old locus tag: Msip34_2876
EC number: 2.7.7.65
EC number: 3.1.4.52
inference: COORDINATES: protein motif:HMM:NF012772.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional diguanylate cyclase/phosphodiesterase
translation: MLIQIQQANLKNGAQRLPTGHPAMCDHDSFVDNLMRIIEATDRNEILLVCNVNLDDISSHNETHGYGFTTKAILQIEERLRSFVGHSGLISKARGGEYLLLLRPISSLDHIVPLLRALRDTVSTQNHVGDKRVCITGTVGCSIFPIEGNRGQMLIRNAAQAMYSAKLSGKNRYEIFDSQTAHIAAKEVQKGTVLQQAILNRELELHYQPKVDLYTGNIHSLEALVRWNHPVHGMQQPSAFLPQEYREGVGYQLGLWAIEAVMQQLEAWIQAGYVLPISVNISAGQFLNQSFLADLRRLQTEYPSAKPELIEFEILESEAIEDLERLGAIVVSLQAQGFKFSLDDFGTGYSSLLHLKAIPAQYVKVDKAFVAGITKNLRDHALLQMMIELSQLFNYEIVAEGVETLQHGQMLREMGCRYIQGYFISKPLPADLVIAWVKNYIPCHELAMVNELFPT
SIO_010081: MSIP34_RS14355
subclass of: SO_0000673
so part of: MSIP34_RS14355
location: complement(24917..26284)
location: region:24917-26284:-1
so has part: feature:24917-26284:-1:exon

WP_012777698.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24917-26284:-1:exon

MSIP34_RS14360
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: topA
locus tag: MSIP34_RS14360
old locus tag: Msip34_2877
so part of: sequence
location: complement(26286..28058)
location: region:26286-28058:-1
so has part: feature:26286-28058:-1:exon
subclass of: SO_0000010

position:26286:-1
position: 26286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28058:-1
position: 28058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26286-28058:-1:exon

MSIP34_RS14360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: topA
locus tag: MSIP34_RS14360
old locus tag: Msip34_2877
EC number: 5.6.2.1
inference: COORDINATES: protein motif:HMM:TIGR01051.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I DNA topoisomerase
translation: MSKTLIIVESPTKAKKLSEYLGSEYLVKASFGHVRDLPTSNGEIGYHPETFEPIYEVTEKARTTIKVLKAAVKECDRVLLATDPDREGEAISWHLAELLGLRKRERVKFHEITASAILKAINTPSAIDTSLVRAQEARRIIDRQVGWLVSGPLTRKIGQRASAGRVQSPALALVVEREREILAFKKEAFFTVEAEFSEEWGAVWPSDEQQCKDRSVAETIAESKQFSVLEYDLSKLHEDPPPPFRTSKLLQAASVVLGFDPKRTMDLAQSLFQKHGAISYHRTDESNISDDAYGMIVEYGQERNYPMSSEKRTWKGVVAAQEAHEAIRPSDMNYQPDETMTADEAALYRLIHSRAVASQMEPAEYTVATATLSNEQGIKFKAQSKSLCKPGWRVLAVQDEEHDDNPSLSHIPDLSVGQILHSSNVTVCEHSTRPPKRYTKASLTNALERLGIGRPATYASMVDGLTDRSYVQVVERFLTPEPVGFAIYDALKGAFSFIETEYTRGMESDLDLIVKGDKTYRSVVSSKYSDLTTELASFGGAEIPRPAPSTVGSCPKCGKGMVQRTGSRGPFLGCSGYPKCKETQQLPKGA
SIO_010081: MSIP34_RS14360
subclass of: SO_0000673
so part of: MSIP34_RS14360
location: complement(26286..28058)
location: region:26286-28058:-1
so has part: feature:26286-28058:-1:exon

WP_012777699.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26286-28058:-1:exon

MSIP34_RS14365
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14365
old locus tag: Msip34_2878
so part of: sequence
location: complement(28058..28747)
location: region:28058-28747:-1
so has part: feature:28058-28747:-1:exon
subclass of: SO_0000010

position:28747:-1
position: 28747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28058-28747:-1:exon

MSIP34_RS14365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14365
old locus tag: Msip34_2878
inference: COORDINATES: protein motif:HMM:NF013618.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MNRTLTIISALMLLLWNAQVTASEMDNLLLACAPDVHPQTMGAIVNHESRGNYLVIGDNGNWNLEKKDRVHRTFYPSSINEAVSIAETLIKAGHVVDIGLGQLNNRNLKRLNLSLEESFEPCKNLWGASRVLVEFYQNASKKYGPGQTALYAAISAYNTGSFLNGFKNGYVEKVVTAGQHVVPSLNMGTPAQRKVSVVSAKKKLSAVKVSKTEFASAASAPGYVRGWND
SIO_010081: MSIP34_RS14365
subclass of: SO_0000673
so part of: MSIP34_RS14365
location: complement(28058..28747)
location: region:28058-28747:-1
so has part: feature:28058-28747:-1:exon

WP_012777700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28058-28747:-1:exon

MSIP34_RS14370
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14370
old locus tag: Msip34_2879
so part of: sequence
location: complement(28758..30410)
location: region:28758-30410:-1
so has part: feature:28758-30410:-1:exon
subclass of: SO_0000010

position:28758:-1
position: 28758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30410:-1
position: 30410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28758-30410:-1:exon

MSIP34_RS14370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14370
old locus tag: Msip34_2879
inference: COORDINATES: protein motif:HMM:NF012372.2
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MLDGYYIKKIGQNKGAPRVWLEGSQTARAGFAPGQRFDIHVEGQTIVLQANPDGSRVVSSKKSGDSLNPVIDINSKELLAIFDGMSAIRVAVKEGQIYLVPLASELKKQERYKRLKTKLQTGEPLALGSLSHGGGILDHAIHSGLRAAGIDSKLAFANEIREELLEHAAIHNDAWSENTQIFAAPMQELAFDERGLANIPKTEALVMGLPCSGASKAGKAKRGLIHPESHPEVGHLVVSALVILSKSNPAIVILENVPHYANSASADILRNQLRDMGYNTQERILNGKEWGTLENRDRWVMVAVTHGIEFDFSQLIPPDARPMRLGDVLEEVPLDDPRWNKMQYLKDKEVRDAAEGKNFKMQIFTEDSEHIGTLTKGYAKVRSTDPKIQHPEDPDLLRQITPEEHARIKQVPEHLIAGLSNTVAHEVLGQSVVYTPFKDLGQEVGQVLNVFSDKSARVSNNELPREVIAMGHNVVAELKLANDQVGNYTGPVVAVEKGYFIQDIGKSIGVAHKASQLDKEPILGKQAYVQYKEGHGCVKEKAQSQMSLSL
SIO_010081: MSIP34_RS14370
subclass of: SO_0000673
so part of: MSIP34_RS14370
location: complement(28758..30410)
location: region:28758-30410:-1
so has part: feature:28758-30410:-1:exon

WP_012777701.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28758-30410:-1:exon

MSIP34_RS14750
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14750
old locus tag: Msip34_2880
so part of: sequence
location: complement(30423..32882)
location: region:30423-32882:-1
so has part: feature:30423-32882:-1:exon
subclass of: SO_0000010

position:30423:-1
position: 30423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32882:-1
position: 32882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30423-32882:-1:exon

MSIP34_RS14750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14750
old locus tag: Msip34_2880
inference: COORDINATES: protein motif:HMM:NF014581.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MSDEKKAGSDSIAWWVISFFFICLVVSSFITSQFVAYKFAYQPALGNPWFSLGVFPIYGASDWIHWMLRWSDETGLIDEYLTQGMYIFDAGVAISLLLCAFINYVRTRNKGTPDHLHGSAHWASDEEIRATGLVAKDGVCIGAVDMKDTSLSGKIFGRWHRMILRDDQKTHILMAAPTRSGKGVGLVLPTLLSWRYSTLVHDVKMENFALTSGFRHKAGQLILNFSPTNKDGTAARWNPLDEIRTWSMDDVRDAQNIAAMVADPDAKGMEDHWVSTSYKLLTGVFLHIVYSGKDGERNLPAAAKFIADSSFEDVKQMLSFMLGYEHDPDGRMNWRDESGRPTKTHPEVLLVASEMLKKEEKELGSVISSAVTKLGLFSEPIVAMNVAVSDFRVRDLMNLTQPVSCYYIVPPADKERLRPLSRLFFAFVIRRLTEEMKFEGGKSIEGYKHRLLLMIDELPSLRKLDVLQDGLAYIAGYGLKAVMIIQDMIQLKDAYGDKESVSAGCHIRVAYAPNTMEEARPLSEMLGKKTVEYESRNLSGSRTTHALGQVSLSTQLVGRELMTPSELLELPPSDSIIKAAGFAPIRAKKLKYYEMPVFQSRAEISPPARCSIQFIKDGSVVTLWAMLLVEKDKQGNLLVWINLKDRELLPPVYAVIRQELVDDGQLISKERKFDLIDDQGNIRSNGPFKIANKFRLLSRESDDLDMNDEFSVSLRLVDPAAYKQPQYAGEFVVMSDRKKAVIKQASKLFQHEVKLQDAERDSKNYGVVVLVQSGYVVQDTGYGNAVIHRQARLTLPVQVGTDYLVRYDENGKLGQVIEQ
SIO_010081: MSIP34_RS14750
subclass of: SO_0000673
so part of: MSIP34_RS14750
location: complement(30423..32882)
location: region:30423-32882:-1
so has part: feature:30423-32882:-1:exon

WP_012777702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30423-32882:-1:exon

MSIP34_RS15030
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS15030
old locus tag: Msip34_2881
so part of: sequence
location: 33156..33899
location: region:33156-33899:1
so has part: feature:33156-33899:1:exon
subclass of: SO_0000010

position:33156:1
position: 33156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33899:1
position: 33899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33156-33899:1:exon

MSIP34_RS15030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS15030
old locus tag: Msip34_2881
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSPKMTATAIQKLKRRAKEIKKALGIKHSVALDQAAKEHGFNNWKDIESCYQNLTSSVSLLDIQNDLDSRFVRYREYVRTHASVSLVKPHITTGDIFHEVEIEGIRFAGGVSGNYPYILRRAGITGLMGDVQLGPCSIHLISETESLRAKPGYWICKYDKRQPRVYVGDLSEQGLVTLAHEFGILLPQEWVNKNVKISTFPTSMQRHLFYESPSFESLTQWCFAHPKEFESITGNSYLWDWPLRLSL
SIO_010081: MSIP34_RS15030
subclass of: SO_0000673
so part of: MSIP34_RS15030
location: 33156..33899
location: region:33156-33899:1
so has part: feature:33156-33899:1:exon

WP_012777703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33156-33899:1:exon

MSIP34_RS14380
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14380
old locus tag: Msip34_2882
so part of: sequence
location: complement(34032..36092)
location: region:34032-36092:-1
so has part: feature:34032-36092:-1:exon
subclass of: SO_0000010

position:34032:-1
position: 34032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36092:-1
position: 36092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34032-36092:-1:exon

MSIP34_RS14380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14380
old locus tag: Msip34_2882
inference: COORDINATES: protein motif:HMM:NF037521.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MADNDYRQELTNRIIEALEAGTAPWQKPWDGSVGSFFPLNPTTGKQYRGGNALWLMLQGYEDPRWCTFNQANEMGWKIRKGSKATYIEYWKWSDTVKEFDEEAGEEVDVTLRRERPTVFYAKVFNLSQMENVPELARVQPAWDALEMAEHALAKSEARIFHDQMDKAFYSPGLDEIHMPPRPAFPDASRYYSTALHELGHWTGHESRLGRNLGNGFGSPEYAKEELRAELASLFLSDRLGIPFDFEQHAAYVGSWIKALQEDKHEIFKAARDAEKIVTHVMDLALSKTVEIEKEVLQEKSMAKSRIYLHVPFAERGEAKALGARWDKDVKAWYAPSGKDIRNFSKWENPRDQRVALQEFESACREAGLLLDGPPVMDGKWHYVPVEGGRKKELQGSYKGTLDGSPNGYIKNLYDDSRSRGWKFQTVGVDAEKVAALERSARDHAAKRDAEDQAEKELIARSAAAYVHKLPDFNSTDQHAYLLKQKVPGYGLKKDGDLLVLPMQDINGKIWSYQTIKPEGEKKYKYGGKKTGCFHLIGELQSDKPVLIMEGYATGASAYLATGIPVAVAFDSGNLLEVARAIKQSGRAGEVHIGGDDDRFLRCTVGWSPKGKYFHSNPGVNEGALPNSGRVKAEEAAAAVGGKAIFPKFGSADFTGTDFNDLHKREGLRAVRDQLSLLLQKENVLIL
SIO_010081: MSIP34_RS14380
subclass of: SO_0000673
so part of: MSIP34_RS14380
location: complement(34032..36092)
location: region:34032-36092:-1
so has part: feature:34032-36092:-1:exon

WP_012777704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34032-36092:-1:exon

MSIP34_RS15295
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS15295
old locus tag: Msip34_2883
so part of: sequence
location: complement(36082..36228)
location: region:36082-36228:-1
so has part: feature:36082-36228:-1:exon
subclass of: SO_0000010

position:36082:-1
position: 36082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36228:-1
position: 36228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36082-36228:-1:exon

MSIP34_RS15295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS15295
old locus tag: Msip34_2883
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTIIPPDSTLEEIAITGSEVDSEQVPESELIEQYDGKDGIEEEGHGG
SIO_010081: MSIP34_RS15295
subclass of: SO_0000673
so part of: MSIP34_RS15295
location: complement(36082..36228)
location: region:36082-36228:-1
so has part: feature:36082-36228:-1:exon

WP_012777705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36082-36228:-1:exon

MSIP34_RS14385
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14385
old locus tag: Msip34_2884
so part of: sequence
location: complement(36203..42028)
location: region:36203-42028:-1
so has part: feature:36203-42028:-1:exon
subclass of: SO_0000010

position:36203:-1
position: 36203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42028:-1
position: 42028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36203-42028:-1:exon

MSIP34_RS14385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14385
old locus tag: Msip34_2884
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011875688.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: MASQVPEQLGFDFDAGFNTILETANKLRGITNDRRSATAPAAGGESSQPSDTGTGAQSTVQSIRMGDSRPVGAEFSGSPAVLGEEGGSDLIQPSSGSTGARAGSDIGEYGATELGPNDNGVAELTQYPDRIDPLNYSITAIDELGAGGAKSKFRDNIEALHVLKRIEAEGRHATTAEQSKIVKYVGWGGLPQAFDPRNEDWAKEFAELSSMLSKDEYEAARRSTQDAHYTPDFVVESIYAGLSRLGFNKGRALDPALGTGHFIGLMPAEMSRQISITGIELDNLTARIANTLYPESSIINKGYQEVIIPKNHFDVVVGNFPFGNQSVYDERLPDLSKFSIHNYFAAKSIDHIKPGGLIAMVVSSYFMDGQDTKAREFIAGKAHLVGAIRLPHSTFKQNALTEVTTDIVFLRKALEGETIDKSWVETTPEFDLEAKARFNLNNYYVANRDKMLGTMKMVNLSFRGGTPALVANDDLDLKAALASAIEQLPVGIYTTVDQVIDQVQVQEKMDVPDVKIGAYFLVRTLNGQPIEPTRIARRLPDVLSERSFEWIEARSEQMAERIRGLVEIRTVLRSLMDAEKQEHITGEQLEGHRQALNTVYDRFQKKSGFISSLVMKQAMGDDPEFPLLLALERDYDKGISKEQAKKHGVEAREPSARKAAIFSKRVMSPLRDIEHVDTAKEALVVSMNELGRVDLQRMARLTKKTESTLLEELAGLVYLNPINRRFETAEAYLSGNVKKKLAEAHKAAIDSPRFIENVQALEQVQPKDIEPVDISVQLGSSWVPDEVVSQFVAHLLGDVRRDVNYQAALGKWIVKISAPDRVTNHVTWGTDDIGGNTLIEKILTNKPIEVKDMVGYDEYRNPIYKLNESKTAAATQKADEIKQAFEDWIWEDKDRRVTLARIYNDQFNTNVPTKYDGSHLVLPGASLSVSLRPHQKNVIWRGIQDGTALYDHVVGAGKTFEFIGTGIEMKRMGLLKKPMYVVPNHLLGQWKDAFYELYPSANILVAEKSDFKKENRQRLFGRIATGDWDAVIVAHSSFKKIGVPQETLEIILNEQIDDLTFAIQDLKRNNGQHFSIKELEKTKDRMEARLKRAADTGRKDEVANFDDLGVDALFVDESQEFKNLFITTTMSRVSGLGNLEGSEKAFDLFVKARYLQMKHDGRGLFFGTGTPVSNTIAEVYTVQRYMQYDEMKERGIVHFDAWASTFGKVVTGWELDATGVNYRLNSRFAKFQNVPELTAMYRSFADVITRADLERQAEEIGKRFPTPKIKGGKPQNIIVPRSSMQAEYMGLQRDMLDGEGKPMLKADGLPLKEWTPGSIIHRMENLPDDPSKDNPLKITNDARKAGLDFRLIDPNAPDDANSKVNELVNRVHDIWAQWDSRKGTQLVFCDLSTPKSHSQNIVAAAPIDQEAEAEETEAISMDELLSSGGKFSVYEDIRDKLVAMGIPAHQIRFIHDAKTDLQKSKLFDEMNRGVARILLGSTAKMGAGTNVQKKLVAEHHLDAPWRPSDLEQREGRIIRQGNEFYEEDPDGFEVQLLRYATEKTYDGRMWQTIEVKASGIEQFRKGDALQRVIEDISSEAANAAEMKAAATGNPLIFMQVQLSADLKKMEAIYAGYKRSQHTLDSRIDWLSGSETRTASVIEKYTKEIERRDAHSSDEFRLTIGSKVYGEKDKKQALAEILNHMKTALQHKQPKGTQHPTVHPVGQYRGFDISVYATGEKLQFVIDGEDSYEPHNLEYHKEDEFSLTGFVTRINKNLDVFEERIHLARERLNHDLAELQKALAEHGKAFPQMEKLEILRQDNGDVLAELKKLQADDAYISTWQPRSYQAQKAGQPSQDTVVSIPEPIVEQPQAFSFEKLATDLGKEIIQVNTEFGIYRGTVIEKSEGHIVQSVGKKYIVIHAINNAQTAPQIGEVMEIRYRNNVMQFQAKESSHEHNHSTR
SIO_010081: MSIP34_RS14385
subclass of: SO_0000673
so part of: MSIP34_RS14385
location: complement(36203..42028)
location: region:36203-42028:-1
so has part: feature:36203-42028:-1:exon

WP_148211281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36203-42028:-1:exon

MSIP34_RS14390
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14390
old locus tag: Msip34_2886
so part of: sequence
location: complement(42056..43021)
location: region:42056-43021:-1
so has part: feature:42056-43021:-1:exon
subclass of: SO_0000010

position:42056:-1
position: 42056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43021:-1
position: 43021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42056-43021:-1:exon

MSIP34_RS14390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14390
old locus tag: Msip34_2886
inference: COORDINATES: protein motif:HMM:NF037421.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPD7 domain-containing protein
translation: MQEIEEDIITPVAIQSVEIDQKQPGWNPQHEEAIAVINSFNSDVYLKDMMKDESIIDPRLNEAFETLFPGKLARDYAQFQIGSLPIGIGTEPVIEIEDSITPVSLVPSKNEDGHYPDKRKLLNGLFVERENNQFFRLDAKKPALLDDGQKLRIVNKDLETFQAAIELAHAKGWTAIQVKGSERFRAEAWYQASLKGLQIEGYVPTEKDLIRLSEQRLIPQMNNEDRQTFKASLQSAEDFALERDAGIVYPDSVNENRRFSGKVVKILDSHVIQDIGRNTFAVHEKAKVGNQELGLRLDIKYKGRGAEIQTPSKDRSNSITR
SIO_010081: MSIP34_RS14390
subclass of: SO_0000673
so part of: MSIP34_RS14390
location: complement(42056..43021)
location: region:42056-43021:-1
so has part: feature:42056-43021:-1:exon

WP_012777708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42056-43021:-1:exon

MSIP34_RS14395
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14395
old locus tag: Msip34_2887
so part of: sequence
location: complement(43037..44416)
location: region:43037-44416:-1
so has part: feature:43037-44416:-1:exon
subclass of: SO_0000010

position:43037:-1
position: 43037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44416:-1
position: 44416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43037-44416:-1:exon

MSIP34_RS14395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14395
old locus tag: Msip34_2887
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVEIKVLGFEEFASAVKATGAVNRWPRIVDGQEVVSYSVYLNASVASKLPQHHQEHEFKDIMLHALTEKLWLNPESIRDNLKVAELVAIRGAWMEEILDASAIRNKLGEVVALPDGIIKDYEALTGGLSHPWIQKQIAEQQSLSLGLRPAIAQAENVVGKPINDVIPDEISLGKILAQNESFTVQETHAGEIVTHENRRLVNLPNVGEEVLVSYYRGQGQVTERRKDLKISAPYFDSKTGDLAVNLVGLNGQVKETLLFNSITSIAKFQEAEGLSKEFVAMAMDVRAANPKITDIPKREKIQYSGVYVDPDSGLLAIDYKQNNVLFTAMYGSADAIEKYRDELGLSQHEIDMAHDHEHAARERQDQQGLESLSNAIAFIDREDMKTTSTNLVKGVYVGKVIAETEHHIVQNVGQRTALIHNKRDMDKIPKVGEKLTVRYENYRANVDIPERGQSLNVER
SIO_010081: MSIP34_RS14395
subclass of: SO_0000673
so part of: MSIP34_RS14395
location: complement(43037..44416)
location: region:43037-44416:-1
so has part: feature:43037-44416:-1:exon

WP_041370704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43037-44416:-1:exon

MSIP34_RS14400
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14400
old locus tag: Msip34_2888
so part of: sequence
location: complement(44446..45090)
location: region:44446-45090:-1
so has part: feature:44446-45090:-1:exon
subclass of: SO_0000010

position:44446:-1
position: 44446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45090:-1
position: 45090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44446-45090:-1:exon

MSIP34_RS14400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14400
old locus tag: Msip34_2888
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDLFGNTGGQITKGAMSRANTVIEHWQEMAWNGVRRQKGEFFGDILNPLANRVHDALWEMGDGNVVQHLVEQKLINDPDLAKLAFHHDVRRYVGSKLLVLANIILMAENSPWTQHTNLFEKFEDLHSLSCKHLSWDQKLDRTHVDSANYYGSIIGVSKRFALQNTGQGTLIAHDLNLIDGSVQVDQKYKIKYGNGQGIAELQNEAARIQARAY
SIO_010081: MSIP34_RS14400
subclass of: SO_0000673
so part of: MSIP34_RS14400
location: complement(44446..45090)
location: region:44446-45090:-1
so has part: feature:44446-45090:-1:exon

WP_012777710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44446-45090:-1:exon

MSIP34_RS14405
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14405
old locus tag: Msip34_2889
so part of: sequence
location: complement(45146..46216)
location: region:45146-46216:-1
so has part: feature:45146-46216:-1:exon
subclass of: SO_0000010

position:45146:-1
position: 45146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46216:-1
position: 46216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45146-46216:-1:exon

MSIP34_RS14405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14405
old locus tag: Msip34_2889
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADSMPSGIDVLTTDNSFLVSFPYDRDLVNKINKVPGAQFNKDEQAWEIPKSSADDLDKVVDSMHFELKALEQDRESIMKLAKISAIERMKDYGTEPGITAKISDYHKAGGNHSGEIINVNGRFAAQLTGFGNENGAAFVSIHRLANLNEPVYKGDDVRISYNNNGIGTVYDRSQVKSAEDLTRDFDATLDQDISGVMVGLSGDKYQIKFDFNPDMQQRLQRVAGAEFSKSAGGVWEVPVDVKSFVVRAVADMRKEFAADSLERNELAALAEQKLDGAKVRDAFTKDGLAHYGKIIAVSERYILQHGGQNEFKLHRKSSLGQTVSENQNLKITYDKGRGSVEDRKQEKEKSAALTR
SIO_010081: MSIP34_RS14405
subclass of: SO_0000673
so part of: MSIP34_RS14405
location: complement(45146..46216)
location: region:45146-46216:-1
so has part: feature:45146-46216:-1:exon

WP_012777711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45146-46216:-1:exon

MSIP34_RS15215
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS15215
so part of: sequence
location: complement(46246..46503)
location: region:46246-46503:-1
so has part: feature:46246-46503:-1:exon
subclass of: SO_0000010

position:46246:-1
position: 46246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46503:-1
position: 46503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46246-46503:-1:exon

MSIP34_RS15215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS15215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKALVVEVQEKNTQVGILMNVSDEAVKDCFRADLQKRYGHVVPSKDAVRMFGASHGLPVIDGKISVDAVSRKLMELRALALISAM
SIO_010081: MSIP34_RS15215
subclass of: SO_0000673
so part of: MSIP34_RS15215
location: complement(46246..46503)
location: region:46246-46503:-1
so has part: feature:46246-46503:-1:exon

WP_041370706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46246-46503:-1:exon

MSIP34_RS14415
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14415
old locus tag: Msip34_2891
so part of: sequence
location: complement(46541..47044)
location: region:46541-47044:-1
so has part: feature:46541-47044:-1:exon
subclass of: SO_0000010

position:46541:-1
position: 46541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47044:-1
position: 47044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46541-47044:-1:exon

MSIP34_RS14415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14415
old locus tag: Msip34_2891
inference: COORDINATES: protein motif:HMM:NF027824.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrfB-related DNA-binding protein
translation: MNNAEFDQLVSKTRLSKRSVDAARLVFVDGKRQVEVCQETGIGASQLSRVVAMLDKEDQQQKALNSQANSAENEISVSRAKAVKQARDLNGETILVRNAPEDGLSIGKVLLKTDYHLVQELGRDEVMVHELSKINRLPTVGSSVELVYKNGFAEARQRQVEKERGGR
SIO_010081: MSIP34_RS14415
subclass of: SO_0000673
so part of: MSIP34_RS14415
location: complement(46541..47044)
location: region:46541-47044:-1
so has part: feature:46541-47044:-1:exon

WP_012777713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46541-47044:-1:exon

MSIP34_RS14420
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14420
old locus tag: Msip34_2892
so part of: sequence
location: complement(47560..47985)
location: region:47560-47985:-1
so has part: feature:47560-47985:-1:exon
subclass of: SO_0000010

position:47560:-1
position: 47560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47985:-1
position: 47985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47560-47985:-1:exon

MSIP34_RS14420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14420
old locus tag: Msip34_2892
inference: COORDINATES: protein motif:HMM:NF016408.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polymer-forming cytoskeletal protein
translation: MMLTPVKNFMSAKDIHPDASKNKITTLIAKSAQFKGDMLLQESVHINGTISGNVIVQGDAMMLSLKEGGRIEGNVQADIVVVAGTIVGNITARLLKLQPTAIVDGDIQYERLLVDDGASINSTNICNTGTVMVESLPSSNS
SIO_010081: MSIP34_RS14420
subclass of: SO_0000673
so part of: MSIP34_RS14420
location: complement(47560..47985)
location: region:47560-47985:-1
so has part: feature:47560-47985:-1:exon

WP_041370708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47560-47985:-1:exon

MSIP34_RS14425
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14425
old locus tag: Msip34_2893
so part of: sequence
location: complement(47982..48587)
location: region:47982-48587:-1
so has part: feature:47982-48587:-1:exon
subclass of: SO_0000010

position:47982:-1
position: 47982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48587:-1
position: 48587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47982-48587:-1:exon

MSIP34_RS14425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14425
old locus tag: Msip34_2893
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQKKSVTPVIEAATPPVEIAPTQPDQPTSADSATSNEIQAVRDGSVMGGSVPVQTQSPLEIPIDKMPVAKSVPLDSQIPSNITTKPAEDQQSSARLDKQEQKINELSAIVEALSKKVEAISTVKAETPKQILRTASPGKDEVNRSMKDLKITALLSDGLIFEGDVAVQIGQYSKTLKGKILSINPDTNTIITDNRIYKVQ
SIO_010081: MSIP34_RS14425
subclass of: SO_0000673
so part of: MSIP34_RS14425
location: complement(47982..48587)
location: region:47982-48587:-1
so has part: feature:47982-48587:-1:exon

WP_190274909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47982-48587:-1:exon

MSIP34_RS14430
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14430
old locus tag: Msip34_2895
so part of: sequence
location: complement(48787..50346)
location: region:48787-50346:-1
so has part: feature:48787-50346:-1:exon
subclass of: SO_0000010

position:48787:-1
position: 48787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50346:-1
position: 50346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48787-50346:-1:exon

MSIP34_RS14430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14430
old locus tag: Msip34_2895
inference: COORDINATES: protein motif:HMM:NF014044.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF853 family protein
translation: MKTPVSYIEIQYIFHGVKIMTIRIPLGLDNYVLTQENKERQVVWDSESAINGHMLIAGDSGTGKTHRLRRLIEAMLRNGGSQVRFHIFDIHGDITISNESVVKFSETTDYGFNPLAINPDPDFGGVRKQIQRFITGINKTSRKLGPRQEAVLRYLLSDLYKAHKFMEDDPSTWCIRPEDVQAVSMVGKEGRIYLDVAFEEKDLAKSLGCQWDTELKAWWIHQGQHVGQLCQWPEKIWGKYQPTLLDAVRFARRKLEAIFIGANSVAVNYLSDVNSKASAYHRKVAEALRRGHEPEDKDKLLEQLATAQEKAISAYSQYLKSIQNGREMAEVLRYDSVEVLKSVYERLENLRAIGIFRSAVPPFDPNAAVWRYDIKYLAPDERLLFVFFKLEDLFNKAVQRGVVSNDNKIRDVILIDEAHNFFTDDEDNILNRIAKEARKFGIALICASQSPTHFSSDFLTNVALKIMLPLDLTYWEGTARKLNIEKDQLKNLIPRETALVHIKESGRKSSKFRTIKLSQ
SIO_010081: MSIP34_RS14430
subclass of: SO_0000673
so part of: MSIP34_RS14430
location: complement(48787..50346)
location: region:48787-50346:-1
so has part: feature:48787-50346:-1:exon

WP_148211283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48787-50346:-1:exon

MSIP34_RS14760
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14760
old locus tag: Msip34_2896
so part of: sequence
location: complement(50357..51472)
location: region:50357-51472:-1
so has part: feature:50357-51472:-1:exon
subclass of: SO_0000010

position:50357:-1
position: 50357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51472:-1
position: 51472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50357-51472:-1:exon

MSIP34_RS14760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14760
old locus tag: Msip34_2896
inference: COORDINATES: protein motif:HMM:TIGR00180.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MATKQKVSTGRKSSLEFLQSLDTADQTVQEIAIDTIEPDPHQPRQTWHSSDGIVPAEEQTALENLASDIKEQGVMQPIIVREIGSGKYMIIIGERRWRASKLAGRTTIPAIIRQDLTGVKVALAQLAENVQRENMSDLDTARFVKRMLEENSELQKRDLAQLLNKNPSYVSRMMAFIDPRWAHVVSTGIISFASVLEQFRALPETVQDKLVETAKERGSPIMAHEVHAAKRAEKEKDIGSTSLEPAAGPLDDFGKQFAEILEAGKDETYTRKPDAIIDTTNTIVDRGAEQVSGLPKTPASVKVPSGLLDIQEVKMSLGQLSKLLEMVPVDASVSVTLPLSSETIAEAIALLGGNVPEDPTWLGKSLLDSLR
SIO_010081: MSIP34_RS14760
subclass of: SO_0000673
so part of: MSIP34_RS14760
location: complement(50357..51472)
location: region:50357-51472:-1
so has part: feature:50357-51472:-1:exon

WP_012777718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50357-51472:-1:exon

MSIP34_RS14440
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14440
old locus tag: Msip34_2897
so part of: sequence
location: complement(51496..52236)
location: region:51496-52236:-1
so has part: feature:51496-52236:-1:exon
subclass of: SO_0000010

position:51496:-1
position: 51496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52236:-1
position: 52236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51496-52236:-1:exon

MSIP34_RS14440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14440
old locus tag: Msip34_2897
inference: COORDINATES: protein motif:HMM:NF018290.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MAKVIAVSIQKGGDGKTTFACNLAMAAVKAGYRTALIDLDSQGNAGVTLSGNGGMHRIKEGGAQQIYEEDVPKFTETESGVFILHGHSWLEEIDYRENVDVETLALREKVRTLPFDYVIIDTPPSSGPRQMAALLWSDLVIVPVKAQKFSMIGLSKVLEQIKLAKRRNHGLAYRVVINQFVTSSSEQNQISEELREQLPGVVMKVFKSRVPVSDMLARGLPVWEYKKDKALAQEWYGFCTEVLHLI
SIO_010081: MSIP34_RS14440
subclass of: SO_0000673
so part of: MSIP34_RS14440
location: complement(51496..52236)
location: region:51496-52236:-1
so has part: feature:51496-52236:-1:exon

WP_012777719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51496-52236:-1:exon

MSIP34_RS15040
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS15040
old locus tag: Msip34_2899
so part of: sequence
location: complement(52674..53114)
location: region:52674-53114:-1
so has part: feature:52674-53114:-1:exon
subclass of: SO_0000010

position:52674:-1
position: 52674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53114:-1
position: 53114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52674-53114:-1:exon

MSIP34_RS15040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS15040
old locus tag: Msip34_2899
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKVANSNTANKPVTLSHRRSPVGRPRSRLESLAVIQTRIPEPMYRYCKVVQSIRYPSLTEMFEDMLIRFDTERPWEHGLLWRQPKSAISYHDADAMRTGWKQININLKKDLKSKIITTCKTLNISMSAYSYTALYWWIQYVYPQK
SIO_010081: MSIP34_RS15040
subclass of: SO_0000673
so part of: MSIP34_RS15040
location: complement(52674..53114)
location: region:52674-53114:-1
so has part: feature:52674-53114:-1:exon

WP_012777721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52674-53114:-1:exon

MSIP34_RS14450
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14450
old locus tag: Msip34_2900
so part of: sequence
location: complement(53214..54485)
location: region:53214-54485:-1
so has part: feature:53214-54485:-1:exon
subclass of: SO_0000010

position:53214:-1
position: 53214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54485:-1
position: 54485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53214-54485:-1:exon

MSIP34_RS14450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14450
old locus tag: Msip34_2900
inference: COORDINATES: protein motif:HMM:NF015688.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbI/VirB10 family protein
translation: MSDVYSVGDRVEGQGFNLTQKISGIKKLSPKILKVLAGGGLVLLILLMYAIDSSDAPTPVVKPSNAGDPNTNEASGSATLPLDLTEDVNDGVPAFNTQGPTPINGANAAPLVPATGTLSSSVMETEAAPSPKVDTIAEKRRRDRERAMESNGPVSGFNEVTASLSNSENPGASKAEVEALLAAQAAQAKTPVDEQDDQNKQVRKEKFLKRAEAENEEGYLAAMRKPQITPYEIKAGSVIPAVLKSAINSDLPGLIRGIVTDHVYDSKTGRYILIPRGSTLIGTYDSQIAYGQKRLLAVWTKIIFPDGSTMALKGMPGADQEGSAGMSGEVDNHYLKIFGAALASSVISAGYQISQGGQNVVGLGTTVQTPGQTMASSLGQQLGQAGTAITTKNLNLQPTLTNPVGQRFFINITKDLVFQQPYE
SIO_010081: MSIP34_RS14450
subclass of: SO_0000673
so part of: MSIP34_RS14450
location: complement(53214..54485)
location: region:53214-54485:-1
so has part: feature:53214-54485:-1:exon

WP_012777722.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53214-54485:-1:exon

MSIP34_RS15045
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: trbG
locus tag: MSIP34_RS15045
old locus tag: Msip34_2901
so part of: sequence
location: complement(54495..55406)
location: region:54495-55406:-1
so has part: feature:54495-55406:-1:exon
subclass of: SO_0000010

position:54495:-1
position: 54495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55406:-1
position: 55406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54495-55406:-1:exon

MSIP34_RS15045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: trbG
locus tag: MSIP34_RS15045
old locus tag: Msip34_2901
inference: COORDINATES: protein motif:HMM:TIGR02775.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbG
translation: MRRLKWTISILLMVVAGQSAADTTIKKFLSADEAVISAVKRWQQTGRAKPIVSDDGTVYYPFGQYQAKVICSPIRVCDIALQAGEKITDAPSTGDDVRWSIFKSVSGSNDLKVNHVVVKPKDLDLETNLIIRTDRRVYHIDLISRNEGEYINQVAFYYPNDIQDSWRDEELNVAEKKAEVQAQKEVAECTVDIEHLDTAYEIKGGTPGTRPKFIYNNGTKTCILMPDDAPSWEAAAFVIIGKDDKKQLTNYRVLKQWYVIDKVFDHGALLVGENGSDSRTDIIWKKSPKQADKPARSTFLGIK
SIO_010081: MSIP34_RS15045
subclass of: SO_0000673
so part of: MSIP34_RS15045
location: complement(54495..55406)
location: region:54495-55406:-1
so has part: feature:54495-55406:-1:exon

WP_012777723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54495-55406:-1:exon

MSIP34_RS14460
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14460
old locus tag: Msip34_2902
so part of: sequence
location: complement(55448..56158)
location: region:55448-56158:-1
so has part: feature:55448-56158:-1:exon
subclass of: SO_0000010

position:55448:-1
position: 55448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56158:-1
position: 56158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55448-56158:-1:exon

MSIP34_RS14460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14460
old locus tag: Msip34_2902
inference: COORDINATES: protein motif:HMM:NF016238.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MFEQSDQNQARPNYSEKGKNPFIAGRKEWDDRLHQIAATSHAWKGFAFFLALLVGVLVFGITHIGSQSKIKPYMSVVDRTNYVVHVMGPAEEAATLNDKLLKSIVQNEVRTFIENIRTIVADNHAQKKIMTNVYSRLAAHSAAAKFANEFYSVRSPFKYAENGTISAEIYSALPLSEKSWQVEWKETSRNLAGDILKISRYRGIITYELVTPESEADARKNALGFYITNLTWSVQD
SIO_010081: MSIP34_RS14460
subclass of: SO_0000673
so part of: MSIP34_RS14460
location: complement(55448..56158)
location: region:55448-56158:-1
so has part: feature:55448-56158:-1:exon

WP_012777724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55448-56158:-1:exon

MSIP34_RS14465
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: trbL
locus tag: MSIP34_RS14465
old locus tag: Msip34_2903
so part of: sequence
location: complement(56169..57518)
location: region:56169-57518:-1
so has part: feature:56169-57518:-1:exon
subclass of: SO_0000010

position:56169:-1
position: 56169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57518:-1
position: 57518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56169-57518:-1:exon

MSIP34_RS14465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: trbL
locus tag: MSIP34_RS14465
old locus tag: Msip34_2903
inference: COORDINATES: protein motif:HMM:TIGR02783.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbL
translation: MSRITQHLSIKIFIVVLWTMFPTYGFSAGDLGEVLSQYKTSSMTFYGALQGFALSLLLKLWMVEMSWASIKWVLERKPFEDLLSHFVSASFPPLFFVLVIKMGNTWFPTILESFEFFGTKGSGLSADSASLDPGVILEKGIILQNQMVQKFNTIAGTGPIEALQNILPSLLLMAVCIIILIAFALMAANVFLVWAEAYLLIGVSPILLAFAGMRWTRDMAPKTFNSMIAAGIKILVLMLLMSIFTQLVPKWATEAASWTMQDWSPLWRVAFSAAGCAFFAWKAPQIAANAISGTSSLTAGDALQIAAMAATAAVGGAALAAGAADKVLNGASEALTKGGGAVSNGLMSMGGPSIEPITSSAVIPDPTGPSPISDGSTATTSNSPQGNASGATISGTDGQNIEKMFDNFASQIKPKPTLSEKIQGGVRAFQSTVPNDQASVGGDAVKMKE
SIO_010081: MSIP34_RS14465
subclass of: SO_0000673
so part of: MSIP34_RS14465
location: complement(56169..57518)
location: region:56169-57518:-1
so has part: feature:56169-57518:-1:exon

WP_012777725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56169-57518:-1:exon

MSIP34_RS15300
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS15300
so part of: sequence
location: complement(57542..57715)
location: region:57542-57715:-1
so has part: feature:57542-57715:-1:exon
subclass of: SO_0000010

position:57542:-1
position: 57542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57715:-1
position: 57715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57542-57715:-1:exon

MSIP34_RS15300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS15300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSKLLLSASVVLLATLLSACNAENPDDSKPKVKSDEAANTQLLSDEELQKKIHDRR
SIO_010081: MSIP34_RS15300
subclass of: SO_0000673
so part of: MSIP34_RS15300
location: complement(57542..57715)
location: region:57542-57715:-1
so has part: feature:57542-57715:-1:exon

WP_190274910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57542-57715:-1:exon

MSIP34_RS14470
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: trbJ
locus tag: MSIP34_RS14470
old locus tag: Msip34_2904
so part of: sequence
location: complement(57712..58461)
location: region:57712-58461:-1
so has part: feature:57712-58461:-1:exon
subclass of: SO_0000010

position:57712:-1
position: 57712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58461:-1
position: 58461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57712-58461:-1:exon

MSIP34_RS14470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: trbJ
locus tag: MSIP34_RS14470
old locus tag: Msip34_2904
inference: COORDINATES: protein motif:HMM:TIGR02780.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbJ
translation: MFNIGRKFCVVTTMAFVLNLNLNFAHADTVYCVNCSNEAMEMVRQAQNFAQYTQQTSNLIAQLEVARQQAARLTSSTPFSQSSALLANIMSLVNKGQALGYDLSNISQKFETNYPGFGKQQGSFYENYKRWSETASDSIRGALMSSGYQMGNFANETATAETLRQMNMSATGQMQAIQIGNAVSSEMLDEMRKLRQLNTAQMQAQNAYLLGEQEKTGSELSGLKSFLDQQNTVLPSDDQIRKKLKGTKQ
SIO_010081: MSIP34_RS14470
subclass of: SO_0000673
so part of: MSIP34_RS14470
location: complement(57712..58461)
location: region:57712-58461:-1
so has part: feature:57712-58461:-1:exon

WP_012777726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57712-58461:-1:exon

MSIP34_RS14475
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14475
old locus tag: Msip34_2905
so part of: sequence
location: complement(58522..60996)
location: region:58522-60996:-1
so has part: feature:58522-60996:-1:exon
subclass of: SO_0000010

position:58522:-1
position: 58522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60996:-1
position: 60996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58522-60996:-1:exon

MSIP34_RS14475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14475
old locus tag: Msip34_2905
inference: COORDINATES: protein motif:HMM:NF010404.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transporter
translation: MFWKAFRDKAEGLSDLLRYAASVDDGVVMGKGGELIGGFLYLGSDTESSTAMELNAIAIRLNSVLGSFGNGWMVHCDVVRTEAIGYPGKGAFPDPVSYAIDQERRHHYKSVDGHFQSAYALVFTYLAPSLLESKGREWLFETTGEEKSTNGKTLAAKTIAKFQAAMADVESALSSVFLGVTRLKCIEHRVISHGIEDVWVEDRLMSYLHYAVTGISQKIRLPSIPMYIDTIIGSQDFVGGIIPKIGKKHIQVVNIEGFPAESYPGMLDHLNRLPITYRFSTRFIFLDPEEAKGILNKLRKKWRQKATPLSDQIFNTKTGAVDLDAIQMEKDAESAMSEAGALTVRFGHYTSVVVLMEESLEKLKATTTTVVKSIRDMGFSARVEDINAIEAYFGSLPGEGVANVRKPILHSLNLSHLLPTTSFWAGPERNPCPFYGNDTAPLLYGRGAGATPFRLTLHVGDVGHTLILGPTGSGKSTLLNLIVAQQRRYNRAKIFAFDKGMSAYIPTMAMGGMHYEVGGDNSSLAFCPLAHVDQAHERAWAEEWIEILLSLNGIVVGPRHRSIIHDAVMSLGNADPDLRTLTHFQAQLQDEELRDALSPYVGSGSAAHLLDAEKDTLDLGNLQVFEMEHLMNMGEKNLIPVLMYLFHKIEGQLDGSPTLIVLDEAWLMLSHPLFMEKIREWLKVLRKANAAVVFATQSIEDIVNSAIAPVVFQSCPTKILLPNPEARNEISAKAYKQIGLNERQLELITMGTPKRDYYYLSSVGRRLFSLELGPVALAFVGKSGKEDIKLARELVETHGEYKWVPEWIRRCGIMTEFDKLTNRD
SIO_010081: MSIP34_RS14475
subclass of: SO_0000673
so part of: MSIP34_RS14475
location: complement(58522..60996)
location: region:58522-60996:-1
so has part: feature:58522-60996:-1:exon

WP_012777727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58522-60996:-1:exon

MSIP34_RS14485
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14485
old locus tag: Msip34_2907
so part of: sequence
location: complement(61346..61723)
location: region:61346-61723:-1
so has part: feature:61346-61723:-1:exon
subclass of: SO_0000010

position:61346:-1
position: 61346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61723:-1
position: 61723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61346-61723:-1:exon

MSIP34_RS14485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14485
old locus tag: Msip34_2907
inference: COORDINATES: protein motif:HMM:NF016820.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MKGLVMKNMNLRYVKSAMLLIVLLGLPLAAFAAGESAPWDGALCWLVGALKGKTALAVATIAFVAAAVGFVWGEQLTGIFKTMVNIFVAVCIMLGASSIVNIIASKVDSSYGQQCAQITTIVTNV
SIO_010081: MSIP34_RS14485
subclass of: SO_0000673
so part of: MSIP34_RS14485
location: complement(61346..61723)
location: region:61346-61723:-1
so has part: feature:61346-61723:-1:exon

WP_041370719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61346-61723:-1:exon

MSIP34_RS14490
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: trbB
locus tag: MSIP34_RS14490
old locus tag: Msip34_2908
so part of: sequence
location: complement(61737..62702)
location: region:61737-62702:-1
so has part: feature:61737-62702:-1:exon
subclass of: SO_0000010

position:61737:-1
position: 61737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62702:-1
position: 62702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61737-62702:-1:exon

MSIP34_RS14490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: trbB
locus tag: MSIP34_RS14490
old locus tag: Msip34_2908
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011630639.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer ATPase TrbB
translation: MSNLSRLDETQRNRLNESLRRNLGVKILGALNDPNVIEIMLNPDNTVWFDYLGRGMEYSGYTMPSSQAQLVLQDVASMLGQTVTKDNPVVEGELPLDGSRFEGLIPPIVAAPSFAIRKRASRVFTLDDYVDRNILTPEQAIFIRQSIRDKRNILVVGGTASGKTTLLNAFLDETAKVAPSERMVIIEDTVELQCPIKNIVQMRTSETMDMTKLLRVTMRMRPDRICVGEMRGKEALALLKAWNSGHSGGFATIHADSTTDALLKLDEYVQEAGVPSKMGLISRAVHCVVFIEKSEGGRQVKELARVVGYDRESNLPILEQV
SIO_010081: MSIP34_RS14490
subclass of: SO_0000673
so part of: MSIP34_RS14490
location: complement(61737..62702)
location: region:61737-62702:-1
so has part: feature:61737-62702:-1:exon

WP_012777730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61737-62702:-1:exon

MSIP34_RS14495
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14495
old locus tag: Msip34_2909
so part of: sequence
location: complement(62712..62987)
location: region:62712-62987:-1
so has part: feature:62712-62987:-1:exon
subclass of: SO_0000010

position:62712:-1
position: 62712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62987:-1
position: 62987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62712-62987:-1:exon

MSIP34_RS14495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14495
old locus tag: Msip34_2909
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAQLQPNVTALKNILGKLKVHRLIVPLAYRIGYTTPTIYGWSKIDDEQKALSYLLLISQIDKRETLKDGPTMAEVIDLASKAVVKAMPNKQ
SIO_010081: MSIP34_RS14495
subclass of: SO_0000673
so part of: MSIP34_RS14495
location: complement(62712..62987)
location: region:62712-62987:-1
so has part: feature:62712-62987:-1:exon

WP_012777731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62712-62987:-1:exon

MSIP34_RS14500
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14500
old locus tag: Msip34_2910
so part of: sequence
location: 63149..64075
location: region:63149-64075:1
so has part: feature:63149-64075:1:exon
subclass of: SO_0000010

position:63149:1
position: 63149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64075:1
position: 64075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63149-64075:1:exon

MSIP34_RS14500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14500
old locus tag: Msip34_2910
inference: COORDINATES: protein motif:HMM:NF012894.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: OmpA family protein
translation: MKRLIGTLLVIPVVAHAAYYLEDEVPQKIAAQMAVAETQYKPHPAYEYNIPFYAQKYLLGPTAVAALKNIIGDLQRSKAITIQGRPDSNGQNDTDLARRRALAIKKYLVTNGISESRISVSIEKEIRFDTNPDVFNSTIYTSESLPDLPRKIKSSFYAEGTSSPQLSQPTSQAAAVTKPTPLGQANSSAIQPSIQSTSPTGAPERLAKVEGTFKVLNQPQLIDKPTQLPVPPQAVSYDYPITAELSSESRSAIARFVTTNKITMIIADGSVAGFKKAKELSTFIAEVTGSRPEIKAKGAPKGLVIVKG
SIO_010081: MSIP34_RS14500
subclass of: SO_0000673
so part of: MSIP34_RS14500
location: 63149..64075
location: region:63149-64075:1
so has part: feature:63149-64075:1:exon

WP_012777732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63149-64075:1:exon

MSIP34_RS14505
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14505
old locus tag: Msip34_2911
so part of: sequence
location: 64078..64635
location: region:64078-64635:1
so has part: feature:64078-64635:1:exon
subclass of: SO_0000010

position:64078:1
position: 64078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64635:1
position: 64635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64078-64635:1:exon

MSIP34_RS14505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14505
old locus tag: Msip34_2911
inference: COORDINATES: protein motif:HMM:NF022136.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toxin co-regulated pilus biosynthesis Q family protein
translation: MKRIVFLGFVMNSSMAMAAGQICGDLNEYVVQKVSFSDTTLQSGLIQITNGMPFQIIAKGGNDLRVSALDVSGPLGGVLEKFSKEAGFTYRQNKCLLEISALPPKQTWKIQVGDRISDRFNEWARSSNWTLSWETAEVIAEGNVTYSGSFDEAIITIVDALNNSGSNLKAKFYEANNVLRITERK
SIO_010081: MSIP34_RS14505
subclass of: SO_0000673
so part of: MSIP34_RS14505
location: 64078..64635
location: region:64078-64635:1
so has part: feature:64078-64635:1:exon

WP_012777733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64078-64635:1:exon

MSIP34_RS15050
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS15050
old locus tag: Msip34_2912
so part of: sequence
location: 64635..66314
location: region:64635-66314:1
so has part: feature:64635-66314:1:exon
subclass of: SO_0000010

position:66314:1
position: 66314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64635-66314:1:exon

MSIP34_RS15050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS15050
old locus tag: Msip34_2912
inference: COORDINATES: protein motif:HMM:TIGR02520.1
GO component: GO:0019867 - outer membrane [Evidence IEA]
GO process: GO:0009297 - pilus assembly [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PilN family type IVB pilus formation outer membrane protein
translation: MKPYILLFALPLVLGACATQRVAPINTKVENDYTKTTNLIDYAKKGQPSETTKSAAAERINGLWLPARRIEPSTMQPPLSGNLARTITINRTFNSIQEVAERVTALTGIPVIISPEALLSTTGTSIGGVNTVTSTVVPALNGNTNSYGNMPAMTTSQTFSMVYSGNLAGFLNVAAARYGAYWEEDDGRKSIRFFRTATKTFRLNALPGDTTLTAKISNQSGSQGGSSGTSSSGSTSSTGTTASASSQESGVSFSNLSVWKSVEEAVKAMLSNSGKVVVTAATGTITVSDNPQVLAQVERYVQQQNMAMGRQVVVNVHVYSVSLSNSDSYGINWNAVYNSLSGNFGFTLSNAFAPETGSTNLALKILATAGSASNSELKAFAGSQVMFDALSKQGRVSQITSSSITTLNNQPAPIQVGRQRTYLASSSTTIGTVGSPSVTTLQPGLINTGFSMNLVPHILDSKELLLQYAVDLSSLIGITTVTSGTSSIQTPEIETRNFLQRVKLNSGDTLVVTGFEQTQDEANMQGIGDASNVSLGGGLTGNKGRNVLVVLIQPVIIER
SIO_010081: MSIP34_RS15050
subclass of: SO_0000673
so part of: MSIP34_RS15050
location: 64635..66314
location: region:64635-66314:1
so has part: feature:64635-66314:1:exon

WP_012777734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64635-66314:1:exon

MSIP34_RS14515
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: pilO2
locus tag: MSIP34_RS14515
old locus tag: Msip34_2913
so part of: sequence
location: 66317..67636
location: region:66317-67636:1
so has part: feature:66317-67636:1:exon
subclass of: SO_0000010

position:66317:1
position: 66317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67636:1
position: 67636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66317-67636:1:exon

MSIP34_RS14515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: pilO2
locus tag: MSIP34_RS14515
old locus tag: Msip34_2913
inference: COORDINATES: protein motif:HMM:NF018562.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 4b pilus protein PilO2
translation: MADTFVFDKSKVFVSGLFWQALSGSQADYKKLTKKAAAEINSQGTSSKLDVAAWRTSPALQVGLGASADGVKPGMMSAAAVVSKAMEELKKSEEIKDDRDFLCAVQIPTGWLYVAQREGVILYNGDIISTEDAIKSRLLGDMSLSDWKTIIAPEHWGIRGAVGGKTFADFLPTRKGKIDYKKWWEVKPIDRMASFNANPVKASTPILLVVALGIAVSVGYQKWKNHQLTQEAMRLAMMHSTSPAPAIPPIHPWKSEPLAAESISTCLKAIKGVRSLWPGNWEPQEATCSGGALNLSWKAKEFGWMEHLKAVEPNAMFSPDGSIASLSIPLELPTHYEDEVLLPEAERSYEMQSQAQKHKITLTLAPKEPIAPALPGQQDPQAILKDWKELKWSIAATLLSPISIADTLGGQGFRITRIQAVFSNGLISWNLEGTQYVQP
SIO_010081: MSIP34_RS14515
subclass of: SO_0000673
so part of: MSIP34_RS14515
location: 66317..67636
location: region:66317-67636:1
so has part: feature:66317-67636:1:exon

WP_012777735.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66317-67636:1:exon

MSIP34_RS14520
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14520
old locus tag: Msip34_2914
so part of: sequence
location: 67623..68069
location: region:67623-68069:1
so has part: feature:67623-68069:1:exon
subclass of: SO_0000010

position:67623:1
position: 67623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68069:1
position: 68069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67623-68069:1:exon

MSIP34_RS14520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14520
old locus tag: Msip34_2914
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: type IV pilus biogenesis protein PilP
translation: MYNRKLLIIALLSSISSPCFADKTSDEILGINEQIAILNARLGKAEAEVKLANKNQELQKLSGSSLDGDDLPVVRSIEGVDGRLLATLAGSGGITQTVGKGGKFGVWTVKSINVNSVTLVRGQKVVTLGFGSEPAAAATSYNNPALPR
SIO_010081: MSIP34_RS14520
subclass of: SO_0000673
so part of: MSIP34_RS14520
location: 67623..68069
location: region:67623-68069:1
so has part: feature:67623-68069:1:exon

WP_012777736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:67623-68069:1:exon

MSIP34_RS14525
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14525
old locus tag: Msip34_2915
so part of: sequence
location: 68095..69588
location: region:68095-69588:1
so has part: feature:68095-69588:1:exon
subclass of: SO_0000010

position:68095:1
position: 68095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69588:1
position: 69588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68095-69588:1:exon

MSIP34_RS14525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14525
old locus tag: Msip34_2915
inference: COORDINATES: protein motif:HMM:NF012652.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATPase, T2SS/T4P/T4SS family
translation: MNYNGHKVLTAEGGEYDLPEELRHVMAFLDDGRLLVSKSHTFNPHVNAFVGKLERAGKHFQFVTVEMAVIAEVYKGAQAETKQAAHSDMQKVAFSLFEKAVKLRASDIHIRVSGRDRTKILFRVHDDLELVGEDTYENGLQLCTTIYHSMSSESDAVFLPQERQDARISDKDKLPKGLDGIRIATTPQVDGNVMVLRLLYNDTTENLDLTSLGYEKHQAEDVDVLKKKPTGIIVIGGPTGSGKSTTLQRVLASIIKESMGRKNVITVEDPPEYPITGAVQTPVTNADGDEARSDAFQKAIRAAMRLDPDVMMIGEVRDSPSARLAIQGAMTGHQVYTTVHANSAFAILNRLIDLGVQMELLSDPSIVSGLICQRLLKVLCDHCKLPLDSAEVQKRYKESDIDRIMRIGRLDQIFVHGHGCDHCRNTGLTGRTVVAETVATNEELMSFIRNNDRLGALEHWKRNMNGMTMLDHAVKKVLSGTVDPFQAEDIVGFLGTS
SIO_010081: MSIP34_RS14525
subclass of: SO_0000673
so part of: MSIP34_RS14525
location: 68095..69588
location: region:68095-69588:1
so has part: feature:68095-69588:1:exon

WP_012777737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68095-69588:1:exon

MSIP34_RS14530
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14530
old locus tag: Msip34_2916
so part of: sequence
location: 69603..70697
location: region:69603-70697:1
so has part: feature:69603-70697:1:exon
subclass of: SO_0000010

position:69603:1
position: 69603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70697:1
position: 70697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69603-70697:1:exon

MSIP34_RS14530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14530
old locus tag: Msip34_2916
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011486084.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II secretion system F family protein
translation: MDIEMFASAEEKFAKLMFQFDTKSRRSLWLKLSKLLGNGVPILQSLQSIYGTRLQTGGKSHPQTFALKEWISGVENGKRLSEMIVGWVGTEERMLIAAGESSGKPEDSLESAARVLSAKSQIKGAVLSGILYPAVLVSAAFGVLYVFGFMIVPAFLRIASVEKWSGLARKMIEVSLFAQHWLWLIALLLITIFIVFIYSLPRWDGQLRIMLDRYAPFSIYRVMNGSTWLIALAALVEAGLRVEIALQQLAATASPWMKTRILACLSGIRSGHDMGAALSKSGYEFPDREIITDLGVYSQLGGFDEALSILGNEWLKESVAQIKARMQVVFGISILIVGSLIAFMAGGMMNMMLQMGQLVKNGLH
SIO_010081: MSIP34_RS14530
subclass of: SO_0000673
so part of: MSIP34_RS14530
location: 69603..70697
location: region:69603-70697:1
so has part: feature:69603-70697:1:exon

WP_238525895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69603-70697:1:exon

MSIP34_RS14535
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14535
old locus tag: Msip34_2917
so part of: sequence
location: 70716..71246
location: region:70716-71246:1
so has part: feature:70716-71246:1:exon
subclass of: SO_0000010

position:70716:1
position: 70716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71246:1
position: 71246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70716-71246:1:exon

MSIP34_RS14535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14535
old locus tag: Msip34_2917
inference: COORDINATES: protein motif:HMM:NF020384.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 4 pilus major pilin
translation: MKKHYKFARNQAGVTLMELIIGLAIIGVIIAGVTALFGSADSQQKSNQIQVDLTAIRTAVKQLYFGQGGYGTANMNDTLVTAKKIPTTLSVDTSTSPDTISHAMNGTINIVGATTAYNVTVTNIPSDVCTNIMAAGTGWTTIKAGSAAARTLPITPVTAAADCGAANPTTMIFTGQ
SIO_010081: MSIP34_RS14535
subclass of: SO_0000673
so part of: MSIP34_RS14535
location: 70716..71246
location: region:70716-71246:1
so has part: feature:70716-71246:1:exon

WP_012777739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:70716-71246:1:exon

MSIP34_RS14540
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14540
old locus tag: Msip34_2918
so part of: sequence
location: 71258..72187
location: region:71258-72187:1
so has part: feature:71258-72187:1:exon
subclass of: SO_0000010

position:71258:1
position: 71258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72187:1
position: 72187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71258-72187:1:exon

MSIP34_RS14540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14540
old locus tag: Msip34_2918
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011486086.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATPase, T2SS/T4P/T4SS family
translation: MMLSDIVFSDIYLGSAASWLAGVPGTKDPVPAPSDCQEELTALRQKCEEYAEKTKRLEFAIKQGEVAYRASTLTSMRETVYVLRRFPQSIPKLTDLGLHATYVSRFLIPGLTGLLIVAGAFGQGKTTTAASIIDARLHEHGGVAVTIEDPPEMPLEGNHGEGVCYQTWVDQGGFAEACRQAARWTPSIIFVGEVRDAETASEALRASINGRLVVCTIHADSVPMAIERIFSLANGVAGTSEDVASLIGNGLVGVLHQRLKGDPRRLEVESLWLHGDDYHGARNQIKMRKFDQLASEVNAQLNKILSGRV
SIO_010081: MSIP34_RS14540
subclass of: SO_0000673
so part of: MSIP34_RS14540
location: 71258..72187
location: region:71258-72187:1
so has part: feature:71258-72187:1:exon

WP_041370721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:71258-72187:1:exon

MSIP34_RS15055
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: pilM
locus tag: MSIP34_RS15055
old locus tag: Msip34_2919
so part of: sequence
location: 72214..72642
location: region:72214-72642:1
so has part: feature:72214-72642:1:exon
subclass of: SO_0000010

position:72214:1
position: 72214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72642:1
position: 72642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72214-72642:1:exon

MSIP34_RS15055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: pilM
locus tag: MSIP34_RS15055
old locus tag: Msip34_2919
inference: COORDINATES: protein motif:HMM:NF019064.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV pilus biogenesis protein PilM
translation: MIGTLFIGFFALVTVPAEQAQRSLLVADVVATNFLTYRASVVEYTNAHPSASGTINDSSLTFKLGYIRDPRWTNTIQSNTLYIYSSTTLEPRVKEVVFNKTRRNLSSGIKGSSGRLISPNGIDTGIVLPASIPTGAITMVGD
SIO_010081: MSIP34_RS15055
subclass of: SO_0000673
so part of: MSIP34_RS15055
location: 72214..72642
location: region:72214-72642:1
so has part: feature:72214-72642:1:exon

WP_012777741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:72214-72642:1:exon

MSIP34_RS14545
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
locus tag: MSIP34_RS14545
old locus tag: Msip34_2920
so part of: sequence
location: 72647..73723
location: region:72647-73723:1
so has part: feature:72647-73723:1:exon
subclass of: SO_0000010

position:72647:1
position: 72647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73723:1
position: 73723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72647-73723:1:exon

MSIP34_RS14545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
locus tag: MSIP34_RS14545
old locus tag: Msip34_2920
inference: COORDINATES: protein motif:HMM:NF012652.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATPase, T2SS/T4P/T4SS family
translation: MEEIVLGTRDIKADLLGLLNSELPFTDLLLQKNTPVMAKLPTGWTEVQDFLPLTDDDVITIVEGLDSDYINTLKKRAINRPLTLTNWRLRINAYLALENIMMSIRRVPINPPELKTLGLPASVRLLLEAPRGLLLVSGATGSGKTTTVAAIIEEINLSKQSHIVTIEDPVEFVYKRKKAVFSQREIGVDATSFYEGARDAMRQCPNVIVIGEIRDKETADTALLASESGHLVIGTLHANSAVGTVQKLLGFFPEQERSSRAQSLAINLVGIINQILLPKIDGTGYSLAAEVLANHKQQFSNVLDDPTKLASALDRNDDKVSVNMAESLAELVRKNAVSKLDAIKASFGSPALYEKLRV
SIO_010081: MSIP34_RS14545
subclass of: SO_0000673
so part of: MSIP34_RS14545
location: 72647..73723
location: region:72647-73723:1
so has part: feature:72647-73723:1:exon

WP_012777742.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:72647-73723:1:exon

MSIP34_RS15060
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: pilV
locus tag: MSIP34_RS15060
old locus tag: Msip34_2921
so part of: sequence
location: 73746..75206
location: region:73746-75206:1
so has part: feature:73746-75206:1:exon
subclass of: SO_0000010

position:73746:1
position: 73746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75206:1
position: 75206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73746-75206:1:exon

MSIP34_RS15060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: pilV
locus tag: MSIP34_RS15060
old locus tag: Msip34_2921
inference: COORDINATES: protein motif:HMM:NF016785.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: shufflon system plasmid conjugative transfer pilus tip adhesin PilV
translation: MIKQAGVTLLELVIGLAILGTVMVGISQLIKLMGEDTQLTLAAQQVKVVGEAAQAYIRDNYSAVIANATASTPALIRVSDLIANGNLSTGYSSSNTFNQTMCVLVLEPTTDHLVALVVAEGGTTIDDISLGGIAGYIGAAGGGIYTSAPTIIRGSVGGYSLAIGNFGNANHLGQKCDGSSGAVSLTVGHPVQALWFADGDSTSAFLYRNSIPGRPELNRMNTDIDMNNNDISNVATVQINTIVTNGTACTTNGVVARDATGAVMSCQNLTWQPQGSAYWKDPVSTKAALNTIPCDASTAWQTRIVQTPSVGTGPRAYTCNGSSWMPLAVDDSGNLTVTGTLSLGKALVNDVVTEGSACTPNGLVARDSVGLILSCQSSLWAKASGESGGLKGLLSPKAGKTISCSTSGAISVTYYAYVDATNTPYTRVYSPGNYDSGWVAGFTASGRVTNFNFTAVWDPAAYSKNLTGTYTYTSTTTVCTASFPFS
SIO_010081: MSIP34_RS15060
subclass of: SO_0000673
so part of: MSIP34_RS15060
location: 73746..75206
location: region:73746-75206:1
so has part: feature:73746-75206:1:exon

WP_012777743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73746-75206:1:exon

MSIP34_RS15405
type: Gene
subclass of: SO_0000704
RO_0002162: 582744
gene: pilV
locus tag: MSIP34_RS15405
old locus tag: Msip34_2922
so part of: sequence
location: complement(75509..75970)
location: region:75509-75970:-1
so has part: feature:75509-75970:-1:exon
subclass of: SO_0000010

position:75509:-1
position: 75509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75970:-1
position: 75970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75509-75970:-1:exon

MSIP34_RS15405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 582744
gene: pilV
locus tag: MSIP34_RS15405
old locus tag: Msip34_2922
inference: COORDINATES: protein motif:HMM:NF016785.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: shufflon system plasmid conjugative transfer pilus tip adhesin PilV
translation: MPLAVDDSGNLTVTGTLSLGKALVNDVVTEGSACTPNGLVARDSVGLILSCQSGIYKKGTGGETGLRGMYDPLKGKSASCAISVRSVYASVSTAGDITLGGNINGATFGCTNPPSGRCGIQVGSTLYEAVLTGTGVSYASNGTTQCSGLWPLS
SIO_010081: MSIP34_RS15405
subclass of: SO_0000673
so part of: MSIP34_RS15405
location: complement(75509..75970)
location: region:75509-75970:-1
so has part: feature:75509-75970:-1:exon

WP_238525898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:75509-75970:-1:exon