Thermovirga lienii DSM 17291 plasmid pTLIE01, complete sequence.
type: Entry
definition: Thermovirga lienii DSM 17291 plasmid pTLIE01, complete sequence.
sequence version: NC_016149.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NC_016149.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02232060
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Thermovirga lienii DSM 17291
organism: Thermovirga lienii DSM 17291
taxonomy: Bacteria; Synergistota; Synergistia; Synergistales; Thermovirgaceae; Thermovirga.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP003097.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4085723\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Thermovirga lienii Cas60314, DSM 17291\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Norway\nenvironment :: Oil fields, Fresh water\nnum_replicons :: 2\nref_biomaterial :: DSM 17291, ATCC BAA-1197\nbiotic_relationship :: Free living\ntrophic_level :: Chemoorganotroph\nrel_to_oxygen :: Obligate anaerobe\nisol_growth_condt :: 16825627\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi02948\nType Strain :: Yes\nGreengenes ID :: 143575\nFunding Program :: DOE-GEBA 2007\nIsolation Site :: Production water from an oil well, Norway\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Thermophile\nTemperature Optimum :: 58C\npH :: 6.5 - 7.0\nGram Staining :: Gram-\nDiseas…

sequence
subclass of: SO_0000155
sequence length: 31872
topology: circular
so has quality: SO_0000988
location: 1..31872
location: region:1-31872:1
RO_0002162: 580340

NC_016149
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02232060
type: BioSample
SIO_000068: biosample

1
title: The complete genome of plasmid of Thermovirga lienii DSM 17291
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Peters, L.
author: Mikhailova, N.
author: Saunders, E.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Last, F.I.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Spring, S.
author: Schroeder, M.
author: Brambilla, E.-M.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Unpublished

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Peters, L.
author: Mikhailova, N.
author: Saunders, E.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Last, F.I.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Spring, S.
author: Schroeder, M.
author: Brambilla, E.-M.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Submitted (26-OCT-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31872:1
position: 31872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31872:1:source
so part of: sequence
organism: Thermovirga lienii DSM 17291
mol type: genomic DNA
strain: DSM 17291
isolation source: production water from an oil well
culture collection: DSM:17291
type material: type strain of Thermovirga lienii
plasmid: pTLIE01
country: Norway

580340
type: Taxonomy
SIO_000068: taxonomy

TLIE_RS09705
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09705
old locus tag: Tlie_1887
so part of: sequence
location: 77..1300
location: region:77-1300:1
so has part: feature:77-1300:1:exon
subclass of: SO_0000010

position:77:1
position: 77
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1300:1
position: 1300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77-1300:1:exon

TLIE_RS09705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09705
old locus tag: Tlie_1887
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013810019.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MAQYNITIDSELLHQLFLSDSKDSGVSKLLESVLNQVLQAQATEQLRAEAYERTEERRGYRNGTYPHRLTTRVGSLVLRVPRLRNGKFSTELFSRYQRSEQAFILALMEMVVNGVSTRKVSEITEELCGVRISKSLVSELCRRLDPVIEAWRDRSLKDKEYPFLIVDALVIRVREENRVLHRSMLICVGVNREGIREVLGFVVGDSESEESWGDFFGWLKDRGLRGVDLVVSDDHKGLVKALRRNFQGSSWQRCQTHFIRNILSASPKGLQGELKTRIQAILHAPDMGTARMLLMRVLEEYEEKAPKAMRILEEGFDDAVAILSLPEKYRKRLRTTNSVERLNEEIRRRERVIRIFPSRESAVRLLGAVLLEIDNKWAGGRKYLDMDEYYEYLSQQQSRSSPKIYCL
SIO_010081: TLIE_RS09705
subclass of: SO_0000673
so part of: TLIE_RS09705
location: 77..1300
location: region:77-1300:1
so has part: feature:77-1300:1:exon

WP_014162386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77-1300:1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 580340
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF01055
inference: COORDINATES: profile:INFERNAL:1.1.4
note: molybdenum cofactor riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: molybdenum cofactor
so part of: sequence
location: 1441..1559
location: region:1441-1559:1
so has part: feature:1441-1559:1:region

position:1441:1
position: 1441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1559:1
position: 1559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1441-1559:1:region

TLIE_RS09710
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09710
old locus tag: Tlie_1888
so part of: sequence
location: 1553..2251
location: region:1553-2251:1
so has part: feature:1553-2251:1:exon
subclass of: SO_0000010

position:1553:1
position: 1553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2251:1
position: 2251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1553-2251:1:exon

TLIE_RS09710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09710
old locus tag: Tlie_1888
inference: COORDINATES: protein motif:HMM:NF012301.2
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator
translation: MPKLKVIIADEDPMVCYLCRNYISGIYGFTVTSETHSLSSLKRELKNLTVDLVLLDAHMDKDLKLDGFKGLRSAFPRVDFIVMAKTGDPFIIRNVICQGAFDCLIKPFSFKRLESSLKAYRTYNLGLTTRDSPWNQEELDKMMSELANTKVHPLRGDLPKGIQEKLLEKVIRCLEQSNKALSAKEIGGIVGISRATARRYLEYLLESKLVSVEYPFTKIGRPKKLYKLVQKQ
SIO_010081: TLIE_RS09710
subclass of: SO_0000673
so part of: TLIE_RS09710
location: 1553..2251
location: region:1553-2251:1
so has part: feature:1553-2251:1:exon

WP_014164001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1553-2251:1:exon

TLIE_RS09715
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
gene: pruA
locus tag: TLIE_RS09715
old locus tag: Tlie_1889
so part of: sequence
location: 2358..3992
location: region:2358-3992:1
so has part: feature:2358-3992:1:exon
subclass of: SO_0000010

position:2358:1
position: 2358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3992:1
position: 3992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2358-3992:1:exon

TLIE_RS09715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
gene: pruA
locus tag: TLIE_RS09715
old locus tag: Tlie_1889
EC number: 1.2.1.88
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005854238.1
GO function: GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]
GO process: GO:0006562 - proline catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L-glutamate gamma-semialdehyde dehydrogenase
translation: MNNGIFCFPKPRNEPTKNYAPGSVERKLMRKKLSRQEKIKVEIPVIIGGKEVRTGKIREVTMPCDHGHVLAIYHEAGPKETELAIKEALLAKKEWESLHWTERCAVMLKVAELISNKYRYLLNAATMLGQAKNVHQAEIDAACESIDFLRFGAYQASYIYQWQPLQPHEYDCVNKMEYRPLEGFVLTISPFNFTAIALSLNSSVITMGNTTIWKPARTSLLSSYYLMKIFEEAGLPPGVINFLPGPGSEISEVALRNTNFAGLHFTGSTDTFNTLWKKLGENISKYKNYPRIVGETGGKDFIFAHYSADIHALATALVRGAFEYQGQKCSAASRAYIPKSIWKKLREILVDWTKNLSVGDVRDFKNFVNAVIDEASYKKIMGYIEKAKTSPNAKIIVGGNGDKRTGYYVEPTIIETNDPNFLTMNEEIFGPVLTIFVYEDERFEETLTLCDSTSSYGLTGSIFAKDRKAIEKAAKILRYAAGNFYINDKPTGAVVCQQPFGGARASGTNDKAGTYLNLIRWISPRTIKENLNPPTHWSYPFLEK
SIO_010081: TLIE_RS09715
subclass of: SO_0000673
so part of: TLIE_RS09715
location: 2358..3992
location: region:2358-3992:1
so has part: feature:2358-3992:1:exon

WP_014164002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2358-3992:1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 580340
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00174
inference: COORDINATES: profile:INFERNAL:1.1.4
note: cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: adenosylcobalamin
so part of: sequence
location: 4191..4389
location: region:4191-4389:1
so has part: feature:4191-4389:1:region

position:4191:1
position: 4191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4389:1
position: 4389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4191-4389:1:region

TLIE_RS09720
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09720
old locus tag: Tlie_1890
so part of: sequence
location: 4509..5039
location: region:4509-5039:1
so has part: feature:4509-5039:1:exon
subclass of: SO_0000010

position:4509:1
position: 4509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5039:1
position: 5039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4509-5039:1:exon

TLIE_RS09720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09720
old locus tag: Tlie_1890
inference: COORDINATES: protein motif:HMM:NF018530.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aspartate:alanine antiporter
translation: MGSSSCIVTIFLVVVAAFAGNHLGKLNVGKFSLGESGALVAGMTLSLFLRNYSLLIPSWLIKISLIFFIATVGLIAGKKIQTVIKSHGFKFALLGLSITFIGALTSYIVVLTLPTLSKGHAAGTYVGALTSSPGLASALESATDYGKIMGSNYSADVGVKSKFVCKFPLADKITPF
SIO_010081: TLIE_RS09720
subclass of: SO_0000673
so part of: TLIE_RS09720
location: 4509..5039
location: region:4509-5039:1
so has part: feature:4509-5039:1:exon

WP_014164003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4509-5039:1:exon

TLIE_RS09725
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09725
old locus tag: Tlie_1891
so part of: sequence
location: complement(5036..6268)
location: region:5036-6268:-1
so has part: feature:5036-6268:-1:exon
subclass of: SO_0000010

position:5036:-1
position: 5036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6268:-1
position: 6268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5036-6268:-1:exon

TLIE_RS09725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09725
old locus tag: Tlie_1891
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014162180.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MAHYQVTVDCDLLQGLFIRDDGLARLVENIVNQILDAQATEQLRAKPYERTEERQGYRNGYRDKLLKSRVGELTLMVPRLRSGHFSTELFERYQRSEQALLLAMVEMVVNGVSTRKVRAVVDELCGTEFSKSTVSSLCKRLDDIVKEWNERDLSSQEYPFLLVDAIVIRVRKGGRVRLSSVLLATGINREGYREILGLMLGDSESEAAWSEFFGRLKERGLKGVDLVVSDDHKGLINAIETHFQGATWQRCQTHFIRNILDACPKSLQGDLHGRLRLIFDAPDMETARRLLNETIEAFGARAPKAVERLEAGFEDAMAVMALPGRYRKRLRTTNGVERLNQEIRRRERVIRIFPNEESAVRLIGAVLVEIDEVWTTGKRYFDMAEYWEWKANTEKQQKEVNNADTQVNVA
SIO_010081: TLIE_RS09725
subclass of: SO_0000673
so part of: TLIE_RS09725
location: complement(5036..6268)
location: region:5036-6268:-1
so has part: feature:5036-6268:-1:exon

WP_014162180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5036-6268:-1:exon

TLIE_RS09730
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09730
old locus tag: Tlie_1892
so part of: sequence
location: 6547..7104
location: region:6547-7104:1
so has part: feature:6547-7104:1:exon
subclass of: SO_0000010

position:6547:1
position: 6547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7104:1
position: 7104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6547-7104:1:exon

TLIE_RS09730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09730
old locus tag: Tlie_1892
inference: COORDINATES: protein motif:HMM:NF018530.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YidE/YbjL duplication
translation: MQKAISFVLSFAICCVLGYLLGNIALPLYKIGYFKLGTTGGVLLSSLALGYQRKVFFLDFRINEKVLNKVRSLSLLIFLSSIGLKYGSLFFKTLSFNLIGILFASLVAGSISILFGFWVGHRIFKLDWPLLLGALCGGMTSTPGLGAAIEAVNSDEPVLGYGATYPFALFGMVLFTKMIFVLPAI
SIO_010081: TLIE_RS09730
subclass of: SO_0000673
so part of: TLIE_RS09730
location: 6547..7104
location: region:6547-7104:1
so has part: feature:6547-7104:1:exon

WP_244406377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6547-7104:1:exon

TLIE_RS09735
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09735
old locus tag: Tlie_1893
so part of: sequence
location: 7133..8644
location: region:7133-8644:1
so has part: feature:7133-8644:1:exon
subclass of: SO_0000010

position:7133:1
position: 7133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8644:1
position: 8644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7133-8644:1:exon

TLIE_RS09735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09735
old locus tag: Tlie_1893
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012158312.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetyl-CoA hydrolase/transferase family protein
translation: MELHERIRSKVLREKVVSKEEAAKFIKDGMTVACSGFTPAGYPKVVPEMIAQRAQKGENIRLNIITGASTGDELDGVLARSGVIKKRYPYQTNTDCRNGINSGQIDFCDIHLSHLPQFIKLGYLGNIDIALVEAVAITEDGGIVPSTSVGATNTFVQKADKVIVEINFAQPLDLEGLHDIYDPGDPPLRSPIPLCRVSDRIGIPYIPCPKEKIVAIVISNRKDSTNPVAEIDRDSRLIAGHIIDFLEFEIKKGRFPKNLLPLQSGVGSVANAVLTNFKESRFENLEIYSEVLQDAVLELIDTGKVSFASGTAFTISPSKLDHFYKNLKFYKNYTILRPQEISNNPEVIRRLGVIAMNTAIEIDIYGNVNSTHIGGCAMMNGIGGSGDFTRNAALSIFTTKSVAKDGNISSIVPMVSHHDHTEHDVHVVVTEQGLADLRGLSPKERVKQIIGKCAHPDFRKELWDYYRKALFYAKYKHTPHMLNRVFDLHNYMVKYGTMKPKVC
SIO_010081: TLIE_RS09735
subclass of: SO_0000673
so part of: TLIE_RS09735
location: 7133..8644
location: region:7133-8644:1
so has part: feature:7133-8644:1:exon

WP_014164005.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7133-8644:1:exon

TLIE_RS09740
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
gene: aroB
locus tag: TLIE_RS09740
old locus tag: Tlie_1894
so part of: sequence
location: complement(8744..10312)
location: region:8744-10312:-1
so has part: feature:8744-10312:-1:exon
subclass of: SO_0000010

position:8744:-1
position: 8744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10312:-1
position: 10312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8744-10312:-1:exon

TLIE_RS09740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
gene: aroB
locus tag: TLIE_RS09740
old locus tag: Tlie_1894
EC number: 4.2.3.4
inference: COORDINATES: protein motif:HMM:TIGR01357.1
GO function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
GO process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-dehydroquinate synthase
translation: MKRPSIFIGGFMAAGKTTVGKALSVRTGMPFVDLDVLIEQREGMAVAEIFKKRGEAYFRELEKKTLLDLLDAGNIIVSLGGGTLLNQDLKSKILEEGTLVILGVSPQEAIARAKNEPGKRPLLDEGKVEVLWRERQKIYEGGNLHIETDGKTVGEILDEVLLSLGLLTDEDAPKIEEVIDDSIFIGRGILCEEKLRSLLGDGDLPFVVADELSGPFFSGRLGALKGLYILPRGEEAKTLRHVEGLYEAFAKAGLDRGSTVIALGGGSVGDVAGFAAATWMRGVHLVQCPTTLLAQVDSSIGGKVGVNLPFGKNLVGAFYRPRAVVADVKCLLTLSWDNYRQGLAEIVKYGLGEDWELFKLLENNREALVRRDLDFLVEVIARCVAIKQSIVKMDEQEKTGERMRLNLGHTVAHGIESASGYQWSHGDAVSVGLVVATTLSCRLGLCDEETLNRLKSLLKGLGLPVKSHLTWEQIAPFIEKDKKFTNGKSRLVLPVKGEKSVVIEECTLDKFRECYEEILASE
SIO_010081: TLIE_RS09740
subclass of: SO_0000673
so part of: TLIE_RS09740
location: complement(8744..10312)
location: region:8744-10312:-1
so has part: feature:8744-10312:-1:exon

WP_014164006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8744-10312:-1:exon

TLIE_RS09745
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
gene: aroC
locus tag: TLIE_RS09745
old locus tag: Tlie_1895
so part of: sequence
location: complement(10299..11480)
location: region:10299-11480:-1
so has part: feature:10299-11480:-1:exon
subclass of: SO_0000010

position:10299:-1
position: 10299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11480:-1
position: 11480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10299-11480:-1:exon

TLIE_RS09745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
gene: aroC
locus tag: TLIE_RS09745
old locus tag: Tlie_1895
EC number: 4.2.3.5
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006582854.1
GO function: GO:0004107 - chorismate synthase activity [Evidence IEA]
GO process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chorismate synthase
translation: MGILRFLTSGESHGRGLITVVEGLPAGLSVPIERLEKELERRRRGYGRGARMKIEKDHLTIWGGIWNGKTTGAPCGLTIENSEWEEWRSSMDPQSCDPKAVKEKSVYCPRPGHADLPGGLKYGHENMRPVLERASARATAAWTVAGTLARLLIESLGIEVRSAVTSVGGVTVKVPSEEEEWHVASNSPLGCVFQTDEERLKERIREAMSEGDSLGGAFVVSVKGLPPGVGSYVEWDRRLDGRIAQAMMAIPGIKGVEVGEGGRLADLPGSQVHDGIFMDEKGRIKRETNRAGGIEGGMTNGEEVLVRAFMKPIPTLTRPLPSIRLDLMEASFAHRERSDVCAVPAARIVAEAMLSWVIAEAIMEQFGGDILEEVQERFSSYVSRVGRRDDEKA
SIO_010081: TLIE_RS09745
subclass of: SO_0000673
so part of: TLIE_RS09745
location: complement(10299..11480)
location: region:10299-11480:-1
so has part: feature:10299-11480:-1:exon

WP_014164007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10299-11480:-1:exon

TLIE_RS09750
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
gene: aroE
locus tag: TLIE_RS09750
old locus tag: Tlie_1896
so part of: sequence
location: complement(11500..12339)
location: region:11500-12339:-1
so has part: feature:11500-12339:-1:exon
subclass of: SO_0000010

position:11500:-1
position: 11500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12339:-1
position: 12339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11500-12339:-1:exon

TLIE_RS09750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
gene: aroE
locus tag: TLIE_RS09750
old locus tag: Tlie_1896
EC number: 1.1.1.25
inference: COORDINATES: protein motif:HMM:TIGR00507.1
GO function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: shikimate dehydrogenase
translation: MNINAETKLVALLGDPVEHSLSPTMHNAAFSKMGLNMAYLAFKVKKEDMKGALEGLKSLGAIGCNITVPHKETALTLLDEATSEAKALGAVNTVLFKDGKALGYNTDVIAIEEILDSLISEDKEAFLLGAGGAAKASAYALGKRGFKRVWITNRMENRGKTLVEKMNELFPERPFQFLPWGDLPVSSGGLLINATSLGMSSVPWPKGLLERFLDSWDVKGVLDIVYLPGGTTQLIEEAKRRNLKHVPGEEVLLRQGVWAFRLFTGINPEVCAMRSALGL
SIO_010081: TLIE_RS09750
subclass of: SO_0000673
so part of: TLIE_RS09750
location: complement(11500..12339)
location: region:11500-12339:-1
so has part: feature:11500-12339:-1:exon

WP_014164008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11500-12339:-1:exon

TLIE_RS09755
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
gene: aroA
locus tag: TLIE_RS09755
old locus tag: Tlie_1897
so part of: sequence
location: complement(12323..13639)
location: region:12323-13639:-1
so has part: feature:12323-13639:-1:exon
subclass of: SO_0000010

position:12323:-1
position: 12323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13639:-1
position: 13639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12323-13639:-1:exon

TLIE_RS09755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
gene: aroA
locus tag: TLIE_RS09755
old locus tag: Tlie_1897
EC number: 2.5.1.19
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006301390.1
GO function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-phosphoshikimate 1-carboxyvinyltransferase
translation: MSNDVRIRPAEGGLKGRLTLPGDKSISHRVGFFGALSSEGITAENFSSGADCASTLRCLELAGCLVERIGDKVRVRRGMNPGEIKAPLDAGNSGTTARLLCGLLAGTPGVFAVITGDESLRKRPMGRVVSPLRTLGARIDGPGGGAYLPLSIRGGCLSGGTFELPMASAQVKTALILAGLNAHGSVTVVEPAKSRDHSERLLRHIGVPLRQEDNRITVYPCSDLPGCSIRVPGDFSSAAFWITGALIVPGSDIVLENVGINPTRTGFLECLKKMGASIEIEEKESAGGEPVGNIRVRYSELEGIEVEKDAIPTMIDELPLLALIATQAHGVTKITHAEELRVKESDRISSMAKGLRALGADVEELEDGFFITGPTPLGGGCVESSKDHRIAMTFSIAALAAQDEIIVKDAQCVGISYPEFFDHLSMLSEGVKDLEYKR
SIO_010081: TLIE_RS09755
subclass of: SO_0000673
so part of: TLIE_RS09755
location: complement(12323..13639)
location: region:12323-13639:-1
so has part: feature:12323-13639:-1:exon

WP_014164009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12323-13639:-1:exon

TLIE_RS09760
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09760
old locus tag: Tlie_1898
so part of: sequence
location: complement(13629..14516)
location: region:13629-14516:-1
so has part: feature:13629-14516:-1:exon
subclass of: SO_0000010

position:13629:-1
position: 13629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14516:-1
position: 14516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13629-14516:-1:exon

TLIE_RS09760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09760
old locus tag: Tlie_1898
inference: COORDINATES: protein motif:HMM:NF014234.2
GO function: GO:0008977 - prephenate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA]
GO process: GO:0006571 - tyrosine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: prephenate dehydrogenase/arogenate dehydrogenase family protein
translation: MRLKDCHVGIVGLGLIGGSIACALKTRGGARKVSGWDVDEEVMKFAKERGFIDNGDGTLEELVSSSDVLVIAVPAGEIVDVGGKAYLCPNGNVKAVMDTGSAKRRVGGALSELWRERYVGFHPMAGRENGGINNASCDLFQGALCAVVPFAHTSEEVVEIAEELASALGGSSLRMDPLSHDRAAACLSHFPMLLSMVLPLVAAEQMKDLEGLFSMASGGFRDTSRLSSGPSWLVAQMWEQNQDLIRPLLLRAESLLGEIAGSSTDEVIKMAQKAKSCREKILGMSVSKRGDRDEQ
SIO_010081: TLIE_RS09760
subclass of: SO_0000673
so part of: TLIE_RS09760
location: complement(13629..14516)
location: region:13629-14516:-1
so has part: feature:13629-14516:-1:exon

WP_014164010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13629-14516:-1:exon

TLIE_RS09765
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
gene: aroF
locus tag: TLIE_RS09765
old locus tag: Tlie_1899
so part of: sequence
location: complement(14492..15535)
location: region:14492-15535:-1
so has part: feature:14492-15535:-1:exon
subclass of: SO_0000010

position:14492:-1
position: 14492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15535:-1
position: 15535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14492-15535:-1:exon

TLIE_RS09765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
gene: aroF
locus tag: TLIE_RS09765
old locus tag: Tlie_1899
EC number: 2.5.1.54
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005660255.1
GO function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-deoxy-7-phosphoheptulonate synthase
translation: MLVIHMARGCKSLEVARVCDFLERRGCSLRVVGSFESPYIVSNGCEKVGNLVLSLPGVKTVTSTKKPYPLASRETFPDDNVFHITEDIKVGGGHRLIMAGPCSVESRSQILETASGVKTLGANVLRGGAFKPRTNPYSFQGLGSEGINLLVEAKEKTGLPIVTEIMSPEDLEWLEPHVDILQIGARNMMNFALLKAVGRTRKPVLLKRGMMATVDEWLQAAEYILAGGNHKVILCERGIRSFDTSTRNTLDLSVVPLVKSISHLPVIVDPSHGTGRKELIKPMSMAAMAAGADGLMIEVHPRPHEALSDGAQSLTLEEFGDLMESVNRLCSVLDEEVKAPCGLRIAM
SIO_010081: TLIE_RS09765
subclass of: SO_0000673
so part of: TLIE_RS09765
location: complement(14492..15535)
location: region:14492-15535:-1
so has part: feature:14492-15535:-1:exon

WP_014164011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14492-15535:-1:exon

TLIE_RS10245
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS10245
old locus tag: Tlie_1901
pseudo: true
so part of: sequence
location: 16035..>17182
location: region:16035-17182:1
so has part: feature:16035-17182:1:exon
subclass of: SO_0000010

position:16035:1
position: 16035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17182:1
position: 17182
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16035-17182:1:exon

TLIE_RS10245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS10245
old locus tag: Tlie_1901
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014162178.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: integrase
SIO_010081: TLIE_RS10245
subclass of: SO_0000673
so part of: TLIE_RS10245
location: 16035..>17182
location: region:16035-17182:1
so has part: feature:16035-17182:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16035-17182:1:exon

TLIE_RS09775
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09775
old locus tag: Tlie_1902
so part of: sequence
location: complement(17306..17818)
location: region:17306-17818:-1
so has part: feature:17306-17818:-1:exon
subclass of: SO_0000010

position:17306:-1
position: 17306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17818:-1
position: 17818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17306-17818:-1:exon

TLIE_RS09775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09775
old locus tag: Tlie_1902
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008192590.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rubrerythrin family protein
translation: MREMTKKFLEDAFAGESMAHMKYLIFADEAEQRGLKKLVNLFKAIAYAEFVHARNHYRELGKIHKEMAENVKQCLDGENFEIDEMYPVYNTTAQFQDEKGAERSTRFAWEAEKIHAGMYEKAKELAEKGEDYSADKIYICPVCGHTAEEEPPEKCPVCGAARNAYREFSV
SIO_010081: TLIE_RS09775
subclass of: SO_0000673
so part of: TLIE_RS09775
location: complement(17306..17818)
location: region:17306-17818:-1
so has part: feature:17306-17818:-1:exon

WP_014164013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17306-17818:-1:exon

TLIE_RS09780
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09780
old locus tag: Tlie_1903
so part of: sequence
location: complement(17896..18963)
location: region:17896-18963:-1
so has part: feature:17896-18963:-1:exon
subclass of: SO_0000010

position:17896:-1
position: 17896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18963:-1
position: 18963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17896-18963:-1:exon

TLIE_RS09780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09780
old locus tag: Tlie_1903
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020533421.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MBL fold metallo-hydrolase
translation: MKILLLCVVAVLGLALLCSDGNKRPIRGFASSYHFDGEKFYNPTLPEGFDPTLLDILRMLREERARWPKRVPNLGNPRLEEELKKGSAALTFVGHATFLIQLQGLNILVDPVWSERASPVSWAGPRRVREPALKQDDLPRIDVVLITHNHYDHLDMDTLSALSRRFSPLVLAPLGDGNLLKSYGINDVIEMDWWESVKLDYHTQITFTPVQHTSGRSLFNRARSLWGSFFIKQDGISLYLGGDSGYSRHYLEIAERLGPPDVALLPIGSYLPRWFMQPVHMDPKEAIKAHNDLKAKVSIGMHFGTFQLSAEGFHQPVEELKEALKEGLLAGGRFIVLNEGDTFIYPKDMGTVSLR
SIO_010081: TLIE_RS09780
subclass of: SO_0000673
so part of: TLIE_RS09780
location: complement(17896..18963)
location: region:17896-18963:-1
so has part: feature:17896-18963:-1:exon

WP_148256438.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17896-18963:-1:exon

TLIE_RS09785
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09785
old locus tag: Tlie_1904
so part of: sequence
location: complement(19039..19728)
location: region:19039-19728:-1
so has part: feature:19039-19728:-1:exon
subclass of: SO_0000010

position:19039:-1
position: 19039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19728:-1
position: 19728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19039-19728:-1:exon

TLIE_RS09785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09785
old locus tag: Tlie_1904
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006300145.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM protein
translation: MGGIGVKKNFIDEQGKRVMEIDVLPSKHCTFECVFCPIRQKGKKTDKAHFFDETKEFILFLEKELEYNPPDVLFINSKGEAFLNAQLGEIIKLAKSRGVEVSLYTNGYLLDYPDFAEVAAMCDEVAGEIKTTKEEDFKKFQRPLDGYTLKQYWANMMAFRSQYSGKFVVYVTLIKNLNVDQESISQIRNIIKKLEPHKVIVETFKDERFGKVFGVSEEEMGKLCELILE
SIO_010081: TLIE_RS09785
subclass of: SO_0000673
so part of: TLIE_RS09785
location: complement(19039..19728)
location: region:19039-19728:-1
so has part: feature:19039-19728:-1:exon

WP_014164015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19039-19728:-1:exon

TLIE_RS09790
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09790
old locus tag: Tlie_1905
so part of: sequence
location: complement(19856..20842)
location: region:19856-20842:-1
so has part: feature:19856-20842:-1:exon
subclass of: SO_0000010

position:19856:-1
position: 19856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20842:-1
position: 20842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19856-20842:-1:exon

TLIE_RS09790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09790
old locus tag: Tlie_1905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011697587.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MQKKPSEVIEMKLKSASYGRLSHNAKCSRCRAKAIISLPSHHANFCEDCFLVFFHKAVNRAMKKFPIGLDTPIMVAVSGGKDSLALWDVLADLGFTTKGIHIDLGIPNFSEASRSACEEFAKSRGLELSIYELKDLFGFSLPEIAKLKSSKVCSVCGTLKRQFLNRLALQEGFSVIATGHNLDDEASRLLGNTLRHRDAYLQKAYPFLPAGPGLVARMKPLFRLESEEIRIYCRVRGIKYFGDKCPFARGATSHILLEALQFIESQMPGTKRDFLFGFLDRQTPPQFEDALLGNCSVCGALSYQDTCSVCRLKDELKRKKEFLKDRGH
SIO_010081: TLIE_RS09790
subclass of: SO_0000673
so part of: TLIE_RS09790
location: complement(19856..20842)
location: region:19856-20842:-1
so has part: feature:19856-20842:-1:exon

WP_244406376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19856-20842:-1:exon

TLIE_RS09795
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09795
old locus tag: Tlie_1906
so part of: sequence
location: complement(20917..22182)
location: region:20917-22182:-1
so has part: feature:20917-22182:-1:exon
subclass of: SO_0000010

position:20917:-1
position: 20917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22182:-1
position: 22182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20917-22182:-1:exon

TLIE_RS09795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09795
old locus tag: Tlie_1906
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012458953.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA-guided endonuclease TnpB family protein
translation: MTKSEKIRESLSRTKDIRQRQVARTYVLKLEKLSRDKRKLLERAFLEAKWLYNWTIHQEDVFSIDGNKVKKVHVKVGEDFEERELTILGSQVRQEIADRIKDSIKALSRLKENGMKVGRLKPKKRVNSIPFKQYGVSHKIDFEKKRVHLQKLGSFKVRGLNQTPENAELTKALLVRKPSGYYVHITCYLPKENRKSIDKPIAIDFGVKDKLTLSNGLKIDFEIPESKRLKRLQKELVKKEKGSKNREKTRQKLAREYERINNRRKDAINKIIAFLKFYSLVIFQDDSVKSWHEGLFSREVQYSGIGKLKERLCSSLLPVLEVDRFELTSRVCSKCGAYFEDLRLSDRTVFCPECGNFMDRDLNACLVMLKKVSPALRVVGQGLPELTPVEREASARILGSNPHIRVSYLVEAGSSMLYSME
SIO_010081: TLIE_RS09795
subclass of: SO_0000673
so part of: TLIE_RS09795
location: complement(20917..22182)
location: region:20917-22182:-1
so has part: feature:20917-22182:-1:exon

WP_014164017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20917-22182:-1:exon

TLIE_RS09800
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09800
old locus tag: Tlie_1907
so part of: sequence
location: complement(22221..22703)
location: region:22221-22703:-1
so has part: feature:22221-22703:-1:exon
subclass of: SO_0000010

position:22221:-1
position: 22221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22703:-1
position: 22703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22221-22703:-1:exon

TLIE_RS09800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09800
old locus tag: Tlie_1907
inference: COORDINATES: protein motif:HMM:NF014069.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HD domain-containing phosphohydrolase
translation: MGKTAVPYEILTKPGKLTPEEYRAMQKHTIIAGEVIEAANKEFRDKFGVDSYLALARDIALYHHEKWNGKGYPYGLSGQDIPLAARIVALADVYDALRSKRPYKEPWSHEDAMREIIRQSGEHFDPVIVEAFIELEDRFCEISKTYSIISQKAPPSTGWR
SIO_010081: TLIE_RS09800
subclass of: SO_0000673
so part of: TLIE_RS09800
location: complement(22221..22703)
location: region:22221-22703:-1
so has part: feature:22221-22703:-1:exon

WP_280101484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22221-22703:-1:exon

TLIE_RS09805
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09805
old locus tag: Tlie_1908
so part of: sequence
location: complement(22753..24372)
location: region:22753-24372:-1
so has part: feature:22753-24372:-1:exon
subclass of: SO_0000010

position:22753:-1
position: 22753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24372:-1
position: 24372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22753-24372:-1:exon

TLIE_RS09805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09805
old locus tag: Tlie_1908
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRPLRVILVFFSIVVLFQSPSFSEEPLKEGVAPDPIQAASNFITGLTGQTGQTPAMLGLAGDLQDLAAIGEAIIAGDFSKASHKLGEVTAGKVIGYTAPAIGQIIAIGNIGKMAGDAAVTWVGQKNFEKIYATMLEVVGPVENWPKTREEALRDEFFQATMAAEYRYLETYLIERGYAKDRAEAEKVAIDMILAKGSFERLCNQYGLEGKERTYENLKREIESEAQVSAEMAREEELARVEELKAKAKEAAKEKQEEEAVEAELVKEMAALDKEKEQDELDEKPKPEQSPSLPKPGDTLVVPVDEQDDKPKPEKPKPTELISWSVSSSAGEDQTAFTVTVNNISGKTIEGFACEVEPIGSYLEGGVGWGSSPSFSIIAPEQSISFVVLAMGDVKGVGLSFKGNGKLLGGQELASIHRKKEISADGSYRGGFAGNGISGKISISIRGSSVNGALSGNYKDSNQNVSITGSISGSYNPETGGIYAKWSGMATGSMRYEGKLHDVCEPIFGKLEGIINKGSLAGSWSGGSEYVELSGSWEAK
SIO_010081: TLIE_RS09805
subclass of: SO_0000673
so part of: TLIE_RS09805
location: complement(22753..24372)
location: region:22753-24372:-1
so has part: feature:22753-24372:-1:exon

WP_014164018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22753-24372:-1:exon

TLIE_RS09810
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09810
old locus tag: Tlie_1909
so part of: sequence
location: complement(24446..25543)
location: region:24446-25543:-1
so has part: feature:24446-25543:-1:exon
subclass of: SO_0000010

position:24446:-1
position: 24446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25543:-1
position: 25543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24446-25543:-1:exon

TLIE_RS09810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09810
old locus tag: Tlie_1909
inference: COORDINATES: protein motif:HMM:NF024824.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetratricopeptide repeat protein
translation: MAFLFLGSHPLLAATFEEYMKIGFSAAQSGNFKKAAAAFRLAVKADPESAVAYYNLGVAYQRLDMLKEAEEAYRYAIKFRPDYSGSYLNLGSILNVMGRPKEALEVLSEGLSVDTGNPALYYNIGASFEKLGDDPKALENFKKVTQLAPDFPDGWFRCGAVFERMKGYNEAAACYRKALTLNPDLASALFNLGAVLGNMGDWSGQASYTEKFLAKRPEEALGWYNLGVARLHLGEIQKAQEAFQRAVELAPDYPYGWNNLSLCFIKNGRYVEAVEAASRAVSLEPGLVVAWSNLGFAHLGAKDFKKAEDAYRKALELNPKFNEPHLGLGLVFLARGDLKGVKRELEFLERAKSPLAAKLRQKAGL
SIO_010081: TLIE_RS09810
subclass of: SO_0000673
so part of: TLIE_RS09810
location: complement(24446..25543)
location: region:24446-25543:-1
so has part: feature:24446-25543:-1:exon

WP_148256439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24446-25543:-1:exon

TLIE_RS09815
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
gene: rocD
locus tag: TLIE_RS09815
old locus tag: Tlie_1910
so part of: sequence
location: complement(25896..27101)
location: region:25896-27101:-1
so has part: feature:25896-27101:-1:exon
subclass of: SO_0000010

position:25896:-1
position: 25896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27101:-1
position: 27101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25896-27101:-1:exon

TLIE_RS09815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
gene: rocD
locus tag: TLIE_RS09815
old locus tag: Tlie_1910
EC number: 2.6.1.13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012749381.1
GO function: GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ornithine--oxo-acid transaminase
translation: MAKYTSQELMEMEHKYGAHNYHPLEVVISKAEGIWVEDPEGRRYMDMLSAYSAVNQGHRHPRIIQALKEQADILTLTSRAFFNDRWPLFAKKLAELTGKDMVLPMNTGAEAVETAIKTMRKWGYRVKGVEKDKAEIIVFEQNFHGRTTTIISFSVDPVAKDDYGPYTPGFVIVPYDDLEAVEKAINKNTVGILVEPIQGEAGVVVPSDGFLKGLEKLAKENNVLLAVDEIQTGFCRTGKLFAFQHEDVDPDIIIMGKALGGGVMPVSAVAANKDVLGVFEPGSHGSTFGGNPLACAVAMTAIDVLLEENMAERAKEMGEYFMAGLKAINSPKIKQVRGKGLLIGVVLNESAGKARKYTTALKDRGILCKETHDWIIRFAPPLVITKEEIDQALEIIREVFA
SIO_010081: TLIE_RS09815
subclass of: SO_0000673
so part of: TLIE_RS09815
location: complement(25896..27101)
location: region:25896-27101:-1
so has part: feature:25896-27101:-1:exon

WP_014164020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25896-27101:-1:exon

TLIE_RS09820
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09820
old locus tag: Tlie_1911
so part of: sequence
location: 27468..28520
location: region:27468-28520:1
so has part: feature:27468-28520:1:exon
subclass of: SO_0000010

position:27468:1
position: 27468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28520:1
position: 28520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27468-28520:1:exon

TLIE_RS09820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09820
old locus tag: Tlie_1911
inference: COORDINATES: protein motif:HMM:NF016999.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB family transcriptional regulator
translation: MGLLVLFSTGIVGWKIFERLRLPAPDLLGALFFASMLGASGVTFPFPSMEVTFLSKLIIGSYIGLMVDRKTANMLKKAALPALIVAAWMLSASVGIGFLLYYMTDLPLPTALLGSTAGGVSEMALLSLSLNADTITITLLQVFRVILFLVLMPFLAQWMNKKNSPAKKPTENIKVKDSNTKKNSSPKEILILSLTAVTGGLIGRALGLPAGDLLVTILFVAFLSIKLPSPPRVHPLARSMARIGVGLSIAQQVTKQTLQMLSTIWFPILILALAMIISGIVLSWILHKITGWDYSTCLLASSPGGLSQMSIIADEVGANPLLVSALHTTRLISILTVLPILFRFLLTRYM
SIO_010081: TLIE_RS09820
subclass of: SO_0000673
so part of: TLIE_RS09820
location: 27468..28520
location: region:27468-28520:1
so has part: feature:27468-28520:1:exon

WP_014164021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27468-28520:1:exon

TLIE_RS09825
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09825
old locus tag: Tlie_1912
so part of: sequence
location: complement(28522..29643)
location: region:28522-29643:-1
so has part: feature:28522-29643:-1:exon
subclass of: SO_0000010

position:28522:-1
position: 28522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29643:-1
position: 29643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28522-29643:-1:exon

TLIE_RS09825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09825
old locus tag: Tlie_1912
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010885103.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tungsten cofactor oxidoreductase radical SAM maturase
translation: MAYSFNFWNAKVTIEPKPDLKYLFLEITGRCNLNCPMCFKKSFRDTEGEMPFALYEKIMEDCRAFPELELIYLGGIGEPTFHPDFEAIAKDIKSRGYALGLSTNGTLLTDEMIGFLVGIGLDVVYFSMDTLPGNPMSLGHASSEKVLEVIRKISEIKKAMKRDAPSVGIEVVATKENYKDLPEMVRLFTRLGVQSVIISNLLPVDESQLDYILYDESVDMTKIENKLHALSGRGLAIRLPAFRFKTERRCDFDESISAVIRYDGCVFPCYRLLHSYDEYIFGRKKKVEAHSFGNAGDSSLHDIWTSREYTWFRFIMKNYVYPSCTDCSLRDACDFVLSTEQDCWGNSPSCGDCLWARNLILCPVPKKAASRYL
SIO_010081: TLIE_RS09825
subclass of: SO_0000673
so part of: TLIE_RS09825
location: complement(28522..29643)
location: region:28522-29643:-1
so has part: feature:28522-29643:-1:exon

WP_014164022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28522-29643:-1:exon

TLIE_RS09830
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09830
old locus tag: Tlie_1913
so part of: sequence
location: complement(29646..29897)
location: region:29646-29897:-1
so has part: feature:29646-29897:-1:exon
subclass of: SO_0000010

position:29646:-1
position: 29646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29897:-1
position: 29897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29646-29897:-1:exon

TLIE_RS09830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09830
old locus tag: Tlie_1913
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015859520.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MoaD/ThiS family protein
translation: MAKVKLFATLVEIAKRKEIEIEAKTAREVLDKLKGLYGPSFEKELEHGMIFLVNGRDIAHLQGLDTPVNEDDVISLFPPIGGG
SIO_010081: TLIE_RS09830
subclass of: SO_0000673
so part of: TLIE_RS09830
location: complement(29646..29897)
location: region:29646-29897:-1
so has part: feature:29646-29897:-1:exon

WP_014164023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29646-29897:-1:exon

TLIE_RS09835
type: Gene
subclass of: SO_0000704
RO_0002162: 580340
locus tag: TLIE_RS09835
old locus tag: Tlie_1914
so part of: sequence
location: complement(29913..31718)
location: region:29913-31718:-1
so has part: feature:29913-31718:-1:exon
subclass of: SO_0000010

position:29913:-1
position: 29913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31718:-1
position: 31718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29913-31718:-1:exon

TLIE_RS09835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 580340
locus tag: TLIE_RS09835
old locus tag: Tlie_1914
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013467596.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aldehyde ferredoxin oxidoreductase family protein
translation: MAFEIKLLKVNLTEKKVETEVLGEDIAKRWIGGRGLGAYLMLRAKASKVDPLGPENPLIFAPGPLSGTSAPTGGRYNVVTKSPTTGFIAFANSGGYFGAELKHAGWDAIYIEGKAEKPVYILIQDDNVEIKDASHLWGKVVSETEATLRQEIGSEKAKIALIGPAGENLVKIAAVMNDGHRAAGRAGVGAVMGSKNLKAIAVIGSKGAPQPADREKFMQVVREKVNILRNDPVAGGGLPKYGTAVLVNIINENGLYPHKNFQTGVYDKAPEQSGEALEAKYLTKNKPCYACPIGCGRVTKLPLMKEESEGPEYESIWTFGSNMGINDLASIVTANHLCDEYGLDTISTGSTLAAAMELYENGLIKDEEFEPGPPFRFGNTEVLHYYIDKIAKREGFGDKLAEGSYRLAESYGRPEFSMSVKKLELPAYDPRVVQGLGLHYATCNRGGDHVKGYMISPEILGYPKKMDPTDTSEEKVAMTKLIQEATALVDSAGLCIFTSFGLWGDDYRDLLNSFFGWDLSTEEYIKIGERIWNAERIFNLEAGLKAEEDTLPPRMINEPMPEGPYKGQTSRVKEMMPVYYKLRGWNPDGTVSDAKKQELGL
SIO_010081: TLIE_RS09835
subclass of: SO_0000673
so part of: TLIE_RS09835
location: complement(29913..31718)
location: region:29913-31718:-1
so has part: feature:29913-31718:-1:exon

WP_014164024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29913-31718:-1:exon