Bacillus cytotoxicus strain CH_13 plasmid pCh13_79, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.
Submitted (18-OCT-2017) Institute for Food Safety and Hygiene, University of Zurich, Winterthurerstrasse 272, Zurich, Zurich 8057, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP024110.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 10-JAN-2017\nAssembly Method :: HGAP_SMRT v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 503x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 13:33:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,328\nCDSs (total) :: 4,182\nGenes (coding) :: 3,930\nCDSs (with protein) :: 3,930\nGenes (RNA) :: 146\nrRNAs :: 12, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 12, 12 (5S, 16S, 23S)\ntRNAs :: 105\nncRNAs :: 5\nPseudo Genes (total) :: 252\nCDSs (without protein) :: 252\nPseudo Genes (ambiguous residues) :: 0 of 252\nPseudo Genes (frameshifted) :: 136 of 252\nPseudo Genes (incomplete) :: 141 of 252\nPseudo Genes (internal stop) :: 87 of 252\nPseudo Genes (multiple problems) :: 94 of 252\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Institute for Food Safety and Hygiene, University of Zurich
COORDINATES: similar to AA sequence:RefSeq:WP_000222646.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000368405.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002198661.1
COORDINATES: similar to AA sequence:RefSeq:WP_000437712.1
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002144420.1
type III toxin-antitoxin system ToxN/AbiQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_000412911.1
COORDINATES: similar to AA sequence:RefSeq:WP_000164971.1
COORDINATES: similar to AA sequence:RefSeq:WP_000114569.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001056072.1
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_000557945.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012095049.1
COORDINATES: similar to AA sequence:RefSeq:YP_009513939.1
COORDINATES: protein motif:HMM:NF020305.2
TnsA endonuclease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017674438.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020060800.1
COORDINATES: protein motif:HMM:NF027308.2
COORDINATES: similar to AA sequence:RefSeq:WP_001231331.1
Tn7-like element transposition protein TnsE
COORDINATES: similar to AA sequence:RefSeq:WP_011053237.1
GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
CDGSH iron-sulfur domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008181884.1
COORDINATES: similar to AA sequence:RefSeq:WP_004228582.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017815736.1
COORDINATES: similar to AA sequence:RefSeq:WP_017815737.1
COORDINATES: similar to AA sequence:RefSeq:WP_017815738.1
COORDINATES: similar to AA sequence:RefSeq:WP_009711942.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001188460.1
COORDINATES: similar to AA sequence:RefSeq:WP_002187340.1
COORDINATES: similar to AA sequence:RefSeq:WP_017672941.1
COORDINATES: similar to AA sequence:RefSeq:WP_000579651.1
COORDINATES: similar to AA sequence:RefSeq:WP_016078791.1
COORDINATES: similar to AA sequence:RefSeq:WP_001030996.1
COORDINATES: similar to AA sequence:RefSeq:WP_000059702.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000844421.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002162536.1
COORDINATES: similar to AA sequence:RefSeq:WP_000915095.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_000732342.1
COORDINATES: similar to AA sequence:RefSeq:WP_002087235.1
RapH N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016083813.1
COORDINATES: similar to AA sequence:RefSeq:WP_000217374.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_002175314.1
COORDINATES: similar to AA sequence:RefSeq:WP_016099538.1
COORDINATES: similar to AA sequence:RefSeq:WP_016078772.1
COORDINATES: similar to AA sequence:RefSeq:WP_000369031.1
COORDINATES: similar to AA sequence:RefSeq:WP_002175317.1
COORDINATES: similar to AA sequence:RefSeq:WP_001099046.1
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000517802.1
COORDINATES: similar to AA sequence:RefSeq:WP_016112297.1
AimR family lysis-lysogeny pheromone receptor
COORDINATES: similar to AA sequence:RefSeq:WP_016078652.1
COORDINATES: similar to AA sequence:RefSeq:WP_001201720.1
COORDINATES: similar to AA sequence:RefSeq:WP_000513987.1
COORDINATES: similar to AA sequence:RefSeq:WP_001292830.1
COORDINATES: similar to AA sequence:RefSeq:WP_016083826.1
COORDINATES: similar to AA sequence:RefSeq:WP_016078762.1
COORDINATES: similar to AA sequence:RefSeq:WP_016097498.1
COORDINATES: similar to AA sequence:RefSeq:WP_016083837.1
COORDINATES: similar to AA sequence:RefSeq:WP_000264321.1
COORDINATES: similar to AA sequence:RefSeq:WP_001101885.1
COORDINATES: similar to AA sequence:RefSeq:WP_000886824.1
COORDINATES: similar to AA sequence:RefSeq:WP_000656420.1
COORDINATES: similar to AA sequence:RefSeq:WP_000900636.1
COORDINATES: similar to AA sequence:RefSeq:WP_001996318.1
COORDINATES: similar to AA sequence:RefSeq:WP_001223413.1
COORDINATES: similar to AA sequence:RefSeq:WP_000883996.1
COORDINATES: similar to AA sequence:RefSeq:WP_000235842.1
COORDINATES: similar to AA sequence:RefSeq:WP_000362950.1
COORDINATES: similar to AA sequence:RefSeq:WP_002198592.1
COORDINATES: similar to AA sequence:RefSeq:WP_000511119.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000741610.1
COORDINATES: similar to AA sequence:RefSeq:WP_002198678.1
COORDINATES: similar to AA sequence:RefSeq:WP_016097299.1
COORDINATES: similar to AA sequence:RefSeq:WP_016099597.1
COORDINATES: similar to AA sequence:RefSeq:WP_001056867.1
COORDINATES: similar to AA sequence:RefSeq:WP_000861559.1
COORDINATES: similar to AA sequence:RefSeq:WP_000239771.1
COORDINATES: similar to AA sequence:RefSeq:WP_000741669.1
bifunctional lysozyme/C40 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_016083857.1
COORDINATES: similar to AA sequence:RefSeq:WP_000926963.1
COORDINATES: similar to AA sequence:RefSeq:WP_002198670.1
COORDINATES: similar to AA sequence:RefSeq:WP_000351223.1
COORDINATES: similar to AA sequence:RefSeq:WP_000312930.1
COORDINATES: similar to AA sequence:RefSeq:WP_016097311.1
COORDINATES: similar to AA sequence:RefSeq:WP_000414443.1
COORDINATES: similar to AA sequence:RefSeq:WP_000412848.1
COORDINATES: similar to AA sequence:RefSeq:WP_016078858.1