Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.
Diversity of Burkholderia near neighbor genomes
Submitted (01-DEC-2015) MGGen, Northern Arizona University, ARD, Flagstaff, AZ 86011, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP013412.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.0\nGenome Coverage :: 50x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 01:04:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,204\nCDSs (total) :: 6,127\nGenes (coding) :: 5,925\nCDSs (with protein) :: 5,925\nGenes (RNA) :: 77\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 5\nPseudo Genes (total) :: 202\nCDSs (without protein) :: 202\nPseudo Genes (ambiguous residues) :: 0 of 202\nPseudo Genes (frameshifted) :: 84 of 202\nPseudo Genes (incomplete) :: 159 of 202\nPseudo Genes (internal stop) :: 19 of 202\nPseudo Genes (multiple problems) :: 52 of 202\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004545112.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016908.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_004192528.1
COORDINATES: similar to AA sequence:RefSeq:WP_009905745.1
COORDINATES: similar to AA sequence:RefSeq:WP_011002488.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004205956.1
outer membrane protein assembly factor BamC
COORDINATES: protein motif:HMM:NF033580.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011236151.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017853.2
COORDINATES: protein motif:HMM:NF013014.2
COORDINATES: similar to AA sequence:RefSeq:WP_006756520.1
COORDINATES: protein motif:HMM:NF015831.2
ESPR-type extended signal peptide-containing protein
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_012337256.1
COORDINATES: similar to AA sequence:RefSeq:WP_006759907.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611579.1
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012734825.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006414629.1
COORDINATES: similar to AA sequence:RefSeq:WP_011000145.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_012492354.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020832401.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017235437.1
COORDINATES: similar to AA sequence:RefSeq:WP_011518649.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007182445.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182446.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182447.1
COORDINATES: similar to AA sequence:RefSeq:WP_012432520.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182449.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612082.1
COORDINATES: similar to AA sequence:RefSeq:WP_011153965.1
COORDINATES: similar to AA sequence:RefSeq:WP_011547553.1
COORDINATES: similar to AA sequence:RefSeq:WP_013965670.1
COORDINATES: similar to AA sequence:RefSeq:WP_006746770.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004359146.1
COORDINATES: similar to AA sequence:RefSeq:WP_011694462.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354806.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006749801.1
COORDINATES: similar to AA sequence:RefSeq:WP_014002165.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611589.1
COORDINATES: similar to AA sequence:RefSeq:WP_007178953.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_017333813.1
COORDINATES: protein motif:HMM:NF019984.2
group II intron maturase-specific domain-containing protein
COORDINATES: protein motif:HMM:NF013235.2
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006759120.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006759119.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611695.1
COORDINATES: similar to AA sequence:RefSeq:WP_006028471.1
COORDINATES: similar to AA sequence:RefSeq:WP_011349265.1
GO:0009279 - cell outer membrane [Evidence IEA]
peptidoglycan-associated lipoprotein Pal
COORDINATES: similar to AA sequence:RefSeq:WP_011880201.1
COORDINATES: similar to AA sequence:RefSeq:WP_016240396.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012732762.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636750.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:YP_005229639.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732763.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012732765.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732766.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732767.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732768.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732769.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732770.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012732771.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732772.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732773.1
COORDINATES: similar to AA sequence:RefSeq:WP_011542964.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732775.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012732776.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012732777.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732778.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732779.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732780.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732781.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
bifunctional TVP38/TMEM64 family protein/FAD-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012732782.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732783.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732784.1
GO:0016740 - transferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
TIGR04282 family arsenosugar biosynthesis glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012732785.1
TIGR04283 family arsenosugar biosynthesis glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012732786.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732787.1
COORDINATES: similar to AA sequence:RefSeq:WP_013639248.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732790.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732791.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732792.1
cytochrome c biogenesis CcdA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732793.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732794.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732795.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
Some members of this family are selenoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
arsenosugar biosynthesis radical SAM protein ArsS
COORDINATES: similar to AA sequence:RefSeq:WP_012732796.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732797.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
YiiX/YebB-like N1pC/P60 family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_012732798.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732799.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732800.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736805.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481574.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012431033.1
COORDINATES: similar to AA sequence:RefSeq:WP_009899818.1
COORDINATES: similar to AA sequence:RefSeq:WP_015602523.1
COORDINATES: similar to AA sequence:RefSeq:WP_011326112.1
COORDINATES: protein motif:HMM:NF024418.2
COORDINATES: similar to AA sequence:RefSeq:WP_015875269.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012405348.1
COORDINATES: protein motif:HMM:NF025189.2
COORDINATES: similar to AA sequence:RefSeq:WP_006762370.1
COORDINATES: similar to AA sequence:RefSeq:WP_017333815.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700246.1
COORDINATES: similar to AA sequence:RefSeq:WP_018440296.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493942.1
COORDINATES: similar to AA sequence:RefSeq:WP_010108224.1
COORDINATES: similar to AA sequence:RefSeq:WP_004190471.1
COORDINATES: similar to AA sequence:RefSeq:WP_009893756.1
COORDINATES: similar to AA sequence:RefSeq:WP_004190265.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system membrane subunit TssM
COORDINATES: similar to AA sequence:RefSeq:WP_009893758.1
type IVB secretion system protein IcmH/DotU
COORDINATES: similar to AA sequence:RefSeq:WP_010108213.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_004202226.1
COORDINATES: similar to AA sequence:RefSeq:WP_004190606.1
COORDINATES: similar to AA sequence:RefSeq:WP_009893763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004202229.1
COORDINATES: similar to AA sequence:RefSeq:WP_004554829.1
COORDINATES: similar to AA sequence:RefSeq:WP_004545596.1
type VI secretion system tip protein VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_004525547.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004190851.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_004196180.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_009901012.1
COORDINATES: similar to AA sequence:RefSeq:WP_004530039.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type VI secretion system tube protein Hcp