Hippopotamus amphibius mitochondrion, complete genome.
type: Entry
definition: Hippopotamus amphibius mitochondrion, complete genome.
sequence version: NC_000889.1
sequence date: 2023-04-03
sequence: sequence
division: MAM
label: NC_000889.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Hippopotamus amphibius (hippopotamus)
organism: Hippopotamus amphibius
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Ancodonta; Hippopotamidae; Hippopotamus.
reference: 1
references: 9881471
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence was derived from AJ010957.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16407
topology: circular
so has quality: SO_0000988
location: 1..16407
location: region:1-16407:1
RO_0002162: 9833

NC_000889
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade
author: Ursing, B.M.
author: Arnason, U.
journal: Proc. R. Soc. Lond., B, Biol. Sci.
volume: 265
issue: 1412
pages: 2251-2255
year: 1998
pubmed: 9881471

9881471
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (08-SEP-1999) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Ursing, B.M.
journal: Submitted (04-SEP-1998) Ursing B.M., Division of Evolutionary Molecular Systematics, Department of Genetics, Solvegatan 29, S-223 62 Lund, SWEDEN

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16407:1
position: 16407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16407:1:source
so part of: sequence
organism: Hippopotamus amphibius
organelle: mitochondrion
mol type: genomic DNA

9833
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Phe
so part of: sequence
location: 1..71
location: region:1-71:1
so has part: feature:1-71:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-71:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 9833
product: 12S ribosomal RNA
so part of: sequence
location: 72..1039
location: region:72-1039:1
so has part: feature:72-1039:1:region

position:72:1
position: 72
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1039:1
position: 1039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72-1039:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Val
so part of: sequence
location: 1040..1108
location: region:1040-1108:1
so has part: feature:1040-1108:1:region

position:1040:1
position: 1040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1108:1
position: 1108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1040-1108:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 9833
product: 16S ribosomal RNA
so part of: sequence
location: 1109..2673
location: region:1109-2673:1
so has part: feature:1109-2673:1:region

position:1109:1
position: 1109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2673:1
position: 2673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1109-2673:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2674..2747
location: region:2674-2747:1
so has part: feature:2674-2747:1:region

position:2674:1
position: 2674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2747:1
position: 2747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2674-2747:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: NADH1
gene: ND1
gene synonym: NADH1
so part of: sequence
location: 2750..3706
location: region:2750-3706:1
so has part: feature:2750-3706:1:exon
subclass of: SO_0000010

808678
type: Gene
SIO_000068: ncbigene

position:2750:1
position: 2750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3706:1
position: 3706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2750-3706:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: NADH1
gene: ND1
gene synonym: NADH1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MFIINTLMLVAPILLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPSTSSVSMFIIAPILALTLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMNGSFTLSTLITTQEKLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYINIIMMNAFTTVLFLGTCYNPYLPELYTINFTIKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHVSLPIMTSSIPPQT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2750..3706
location: region:2750-3706:1
so has part: feature:2750-3706:1:exon

NP_008790.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2750-3706:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Ile
so part of: sequence
location: 3706..3774
location: region:3706-3774:1
so has part: feature:3706-3774:1:region

position:3774:1
position: 3774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3706-3774:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Gln
so part of: sequence
location: complement(3772..3843)
location: region:3772-3843:-1
so has part: feature:3772-3843:-1:region

position:3772:-1
position: 3772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3843:-1
position: 3843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3772-3843:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Met
so part of: sequence
location: 3845..3913
location: region:3845-3913:1
so has part: feature:3845-3913:1:region

position:3845:1
position: 3845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3913:1
position: 3913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3845-3913:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: NADH2
gene: ND2
gene synonym: NADH2
so part of: sequence
location: 3914..4957
location: region:3914-4957:1
so has part: feature:3914-4957:1:exon
subclass of: SO_0000010

808682
type: Gene
SIO_000068: ncbigene

position:3914:1
position: 3914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4957:1
position: 4957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3914-4957:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: NADH2
gene: ND2
gene synonym: NADH2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPFVSVIIYTTIILGTMIVMTSSHWLLTWTGFEMNMLAIIPIMMKSPNPRATEASVKYFMTQATASMLLMLAVIINLLYSGQWTVMKMLNPTASMIMTMALAMKLGLSPFHFWVPEVTQGVPLTAGLILLTWQKLAPLSILYQISPSINPNLILTMSMLSILVGGWGGLNQTQLRKIMAYSSIAHMGWMAAILIYNPTMTILNLTIYLMTTFTMFTMFALNSTTTTLSLSHTWNKTPIITTLMLTILLSMGGLPPLTGFVPKWMIIQEMTKNDSIILPTLMAIMALLNLYFYMRLTYSTTLTMFPSSNNMKMKWQFEASKHKTLLPTMIILSTMLLPLTPMLVVLD
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3914..4957
location: region:3914-4957:1
so has part: feature:3914-4957:1:exon

NP_008791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3914-4957:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Trp
so part of: sequence
location: 4956..5022
location: region:4956-5022:1
so has part: feature:4956-5022:1:region

position:4956:1
position: 4956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5022:1
position: 5022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4956-5022:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Ala
so part of: sequence
location: complement(5027..5095)
location: region:5027-5095:-1
so has part: feature:5027-5095:-1:region

position:5027:-1
position: 5027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5095:-1
position: 5095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5027-5095:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Asn
so part of: sequence
location: complement(5098..5171)
location: region:5098-5171:-1
so has part: feature:5098-5171:-1:region

position:5098:-1
position: 5098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5171:-1
position: 5171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5098-5171:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Cys
so part of: sequence
location: complement(5204..5271)
location: region:5204-5271:-1
so has part: feature:5204-5271:-1:region

position:5204:-1
position: 5204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5271:-1
position: 5271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5204-5271:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Tyr
so part of: sequence
location: complement(5272..5337)
location: region:5272-5337:-1
so has part: feature:5272-5337:-1:region

position:5272:-1
position: 5272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5337:-1
position: 5337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5272-5337:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: COI
gene: COX1
gene synonym: COI
so part of: sequence
location: 5339..6884
location: region:5339-6884:1
so has part: feature:5339-6884:1:exon
subclass of: SO_0000010

808675
type: Gene
SIO_000068: ncbigene

position:5339:1
position: 5339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6884:1
position: 6884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5339-6884:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: COI
gene: COX1
gene synonym: COI
codon start: 1
transl except: (pos:6884,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit I
translation: MFMNRWLFSTNHKDIGTLYLLFGAWAGMAGTGLSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFVIMFVGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNTISSMGSFISLTAVVLMVFIIWEAFVSKREVLAVDLTTTNLEWLNGCPPPYHTFEEPAYVNLTS
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5339..6884
location: region:5339-6884:1
so has part: feature:5339-6884:1:exon

NP_008792.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5339-6884:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(6888..6956)
location: region:6888-6956:-1
so has part: feature:6888-6956:-1:region

position:6888:-1
position: 6888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6956:-1
position: 6956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6888-6956:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Asp
so part of: sequence
location: 6965..7031
location: region:6965-7031:1
so has part: feature:6965-7031:1:region

position:6965:1
position: 6965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7031:1
position: 7031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6965-7031:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: COII
gene: COX2
gene synonym: COII
so part of: sequence
location: 7032..7715
location: region:7032-7715:1
so has part: feature:7032-7715:1:exon
subclass of: SO_0000010

808679
type: Gene
SIO_000068: ncbigene

position:7032:1
position: 7032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7715:1
position: 7715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7032-7715:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: COII
gene: COX2
gene synonym: COII
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAYPLQLGFQDAVSPIMEELLYFHDHTLMIVFLISSLVLYIITLMLTTKLTHTNTMNAQEVETVWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDSYMVPTSDLKPGDLRLLEVDNRVVLPMDVTVRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLFYGQCSEICGSNHSFMPIVLELVPLQTFEKWTASLL
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7032..7715
location: region:7032-7715:1
so has part: feature:7032-7715:1:exon

NP_008793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7032-7715:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Lys
so part of: sequence
location: 7719..7782
location: region:7719-7782:1
so has part: feature:7719-7782:1:region

position:7719:1
position: 7719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7782:1
position: 7782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7719-7782:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: ATPase 8
gene: ATP8
gene synonym: ATPase 8
so part of: sequence
location: 7784..7990
location: region:7784-7990:1
so has part: feature:7784-7990:1:exon
subclass of: SO_0000010

808672
type: Gene
SIO_000068: ncbigene

position:7784:1
position: 7784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7990:1
position: 7990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7784-7990:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: ATPase 8
gene: ATP8
gene synonym: ATPase 8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLDTSTWFTTILSMFLTLFIIFQLKISKHTYHPNPETTLPMTQKQPTPWETKWTKIYSPLSLPLQS
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7784..7990
location: region:7784-7990:1
so has part: feature:7784-7990:1:exon

NP_008794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7784-7990:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: ATPase 6
gene: ATP6
gene synonym: ATPase 6
so part of: sequence
location: 7945..8625
location: region:7945-8625:1
so has part: feature:7945-8625:1:exon
subclass of: SO_0000010

808673
type: Gene
SIO_000068: ncbigene

position:7945:1
position: 7945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8625:1
position: 8625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7945-8625:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: ATPase 6
gene: ATP6
gene synonym: ATPase 6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNENLFASFITPTILGLPLVTLIIMFPSMLFPAPTLLITNRLVSIQQWLIQLVSKQMMNIHNHKGQTWTLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVIMGFRNKTKISLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLMHLIGGATLALMNISMTTALITFIILVLLTALEFAVAMIQAYVFTLLVSLYLHDNT
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 7945..8625
location: region:7945-8625:1
so has part: feature:7945-8625:1:exon

NP_008795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7945-8625:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: COIII
gene: COX3
gene synonym: COIII
so part of: sequence
location: 8625..9408
location: region:8625-9408:1
so has part: feature:8625-9408:1:exon
subclass of: SO_0000010

808674
type: Gene
SIO_000068: ncbigene

position:9408:1
position: 9408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8625-9408:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: COIII
gene: COX3
gene synonym: COIII
codon start: 1
transl except: (pos:9408,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQTHAYHMVNPSPWPLTGALSALLMSSGLTMWFHFNSLILLTTGLVTNILTMYQWWRDVIRESTFQGHHTPVVQKGLRYGMVLFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGINPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKQMLQALFITIALGVYFTLLQASEYHEASFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFLRQLKFHFTSDHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8625..9408
location: region:8625-9408:1
so has part: feature:8625-9408:1:exon

NP_008796.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8625-9408:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Gly
so part of: sequence
location: 9410..9479
location: region:9410-9479:1
so has part: feature:9410-9479:1:region

position:9410:1
position: 9410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9479:1
position: 9479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9410-9479:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: NADH3
gene: ND3
gene synonym: NADH3
so part of: sequence
location: 9480..9826
location: region:9480-9826:1
so has part: feature:9480-9826:1:exon
subclass of: SO_0000010

808676
type: Gene
SIO_000068: ncbigene

position:9480:1
position: 9480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9826:1
position: 9826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9480-9826:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: NADH3
gene: ND3
gene synonym: NADH3
codon start: 1
transl except: (pos:9825..9826,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLVMALLTNTALASLLVLIAFWLPQLNSYAEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEVALLLPLPWATQTTNLKTMLIMALTLISLLAISLAYEWTQKGLEWTE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9480..9826
location: region:9480-9826:1
so has part: feature:9480-9826:1:exon

NP_008797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9480-9826:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Arg
so part of: sequence
location: 9827..9895
location: region:9827-9895:1
so has part: feature:9827-9895:1:region

position:9827:1
position: 9827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9895:1
position: 9895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9827-9895:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: NADH4L
gene: ND4L
gene synonym: NADH4L
so part of: sequence
location: 9896..10192
location: region:9896-10192:1
so has part: feature:9896-10192:1:exon
subclass of: SO_0000010

808680
type: Gene
SIO_000068: ncbigene

position:9896:1
position: 9896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10192:1
position: 10192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9896-10192:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: NADH4L
gene: ND4L
gene synonym: NADH4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MSLVYMNIIMAFTTSLVGLLMYRSHLMSSLLCLEGMMLSLFIMATLIILNAHFTLASMMPIILLVFAACEAALGLSLLVMVSNTYGTDYVQSLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9896..10192
location: region:9896-10192:1
so has part: feature:9896-10192:1:exon

NP_008798.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9896-10192:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: NADH4
gene: ND4
gene synonym: NADH4
so part of: sequence
location: 10186..11563
location: region:10186-11563:1
so has part: feature:10186-11563:1:exon
subclass of: SO_0000010

808677
type: Gene
SIO_000068: ncbigene

position:10186:1
position: 10186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11563:1
position: 11563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10186-11563:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: NADH4
gene: ND4
gene synonym: NADH4
codon start: 1
transl except: (pos:11563,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKYIIPTIMLMPLTWMSKNSMIWTNTTAHSLLISLTSLLLLNQFNDNSLNFSPMFFSDPLSTPLLILTMWLLPLMLMASQSHLLKEPPTRKKLFITMLITLQTFLIMTFSAMELILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALIYIQNITGSLNFLMLQYWTQAVSNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMLRITTILNPLTEMMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLVGELLVIMSSFSWSNITIILMGTNIMITTLYSLYMLTTTQRGKYTHHINNITPSFTRENALMALHILPLLLLSLNPKIILGPLY
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10186..11563
location: region:10186-11563:1
so has part: feature:10186-11563:1:exon

NP_008799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10186-11563:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-His
so part of: sequence
location: 11564..11633
location: region:11564-11633:1
so has part: feature:11564-11633:1:region

position:11564:1
position: 11564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11633:1
position: 11633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11564-11633:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11634..11692
location: region:11634-11692:1
so has part: feature:11634-11692:1:region

position:11634:1
position: 11634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11692:1
position: 11692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11634-11692:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11694..11763
location: region:11694-11763:1
so has part: feature:11694-11763:1:region

position:11694:1
position: 11694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11763:1
position: 11763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11694-11763:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: NADH5
gene: ND5
gene synonym: NADH5
so part of: sequence
location: 11764..13548
location: region:11764-13548:1
so has part: feature:11764-13548:1:exon
subclass of: SO_0000010

808681
type: Gene
SIO_000068: ncbigene

position:11764:1
position: 11764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13548:1
position: 13548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11764-13548:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: NADH5
gene: ND5
gene synonym: NADH5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNLFSSTTLTMLFVLTLPIMMTNTNIYKSDKYPTYVKNTVSSAFLISLVPMIAFTNTGQEMIISNWHWITIQTLKLTLSFKADYFSIVFAPVALFVTWSIMEFSMWYMHSDPHINQFFKYLLLFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAAIQAILYNRIGDVGFIMAMAWFLSNLNTWDMQQIFMINPTHSNLPLMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFYPMMENNNLMQTITMCLGAITTLFTAMCALTQNDIKKIIAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMGGLFKTMPFTTTTLIVGSMALTGVPFLTGFYSKDLIIEAANTSYSNAWALLITLVATSLTAVYSTRIIFFALLGHPRFPTSTLIHENNPLLLNSLKRLMAGSIFAGFILSHNLPPMTTPLMTMPPYLKMTALAVTMLGFTLAFEITLNTQNLKYKHPTNSFKFSTLLGYFPTIMHRLPPHLSLTASQKLASSLLDSAWLENILPKSMAHAQLKLSTLVSNQKGLMKMYFSIIPYH
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11764..13548
location: region:11764-13548:1
so has part: feature:11764-13548:1:exon

NP_008800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11764-13548:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: NADH6
gene: ND6
gene synonym: NADH6
so part of: sequence
location: complement(13571..14098)
location: region:13571-14098:-1
so has part: feature:13571-14098:-1:exon
subclass of: SO_0000010

808670
type: Gene
SIO_000068: ncbigene

position:13571:-1
position: 13571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14098:-1
position: 14098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13571-14098:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: NADH6
gene: ND6
gene synonym: NADH6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MMTYVVFILSIVFVIGLIGSPSKPSPIYGGLGLIVSGGAGCGMVLNFGGSFLGLMVFLVYLGGMLVVFGYTTAMATEQYPEVWVSNKVVLGAFLLGLMMEFLAVLYVLKEGEVELVFKFSGLGDWVVYGMSDFGVFSGEAMGVAALYSYGVWLVVVTGWSLFVGVVVIMEVTRGG
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13571..14098)
location: region:13571-14098:-1
so has part: feature:13571-14098:-1:exon

NP_008801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13571-14098:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Glu
so part of: sequence
location: complement(14099..14167)
location: region:14099-14167:-1
so has part: feature:14099-14167:-1:region

position:14099:-1
position: 14099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14167:-1
position: 14167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14099-14167:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 9833
alternative label: cytb
gene: CYTB
gene synonym: cytb
so part of: sequence
location: 14172..15311
location: region:14172-15311:1
so has part: feature:14172-15311:1:exon
subclass of: SO_0000010

808671
type: Gene
SIO_000068: ncbigene

position:14172:1
position: 14172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15311:1
position: 15311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14172-15311:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9833
alternative label: cytb
gene: CYTB
gene synonym: cytb
codon start: 1
transl table: 2
product: cytochrome b
translation: MTNIRKSHPLMKIINDAFVDLPAPSNISSWWNFGSLLGVCLILQILTGLFLAMHYTPDTLTAFSSVTHICRDVNYGWVIRYMHANGASIFFICLFTHVGRGLYYGSHTFLETWNIGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFILPFVITALAIVHLLFLHETGSNNPTGIPSNADKIPFHPYYTIKDILGILLLMTTLLTLTLFAPDLLGDPDNYTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILALIPMLHTSKQRSLMFRPLSQCLFWALIADLLTLTWIGGQPVEHPFIIIGQVASILYFLLILVLMPVAGIIENKLLKW
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14172..15311
location: region:14172-15311:1
so has part: feature:14172-15311:1:exon

NP_008802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14172-15311:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Thr
so part of: sequence
location: 15312..15381
location: region:15312-15381:1
so has part: feature:15312-15381:1:region

position:15312:1
position: 15312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15381:1
position: 15381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15312-15381:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9833
product: tRNA-Pro
so part of: sequence
location: complement(15381..15447)
location: region:15381-15447:-1
so has part: feature:15381-15447:-1:region

position:15381:-1
position: 15381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15447:-1
position: 15447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15381-15447:-1:region