Gluconobacter sphaericus strain SJF2-1 plasmid pSJF2-f, complete sequence.
type: Entry
definition: Gluconobacter sphaericus strain SJF2-1 plasmid pSJF2-f, complete sequence.
sequence version: NZ_CP068425.1
sequence date: 2023-02-12
sequence: sequence
division: CON
label: NZ_CP068425.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16268702
keyword: RefSeq
source: Gluconobacter sphaericus
organism: Gluconobacter sphaericus
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP068425.1.\nBacteria and source DNA available from Prof. Kyoung Lee (KCTC\n82305).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nAssembly Name :: Gluconobacter sphaericus SJF2-1 Genome\n and Annotations\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 2870.0x\nSequencing Technology :: PacBio RSII; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 22:52:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,096\nCDSs (total) :: 3,024\nGenes (coding) :: 2,879\nCDSs (with protein) :: 2,879\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 145\nCDSs (without protein) :: 145\nPseudo Genes (ambiguous residues) :: 0 of 145\nPseudo Genes (frameshifted) :: 81 of 145\nPseudo Genes (incomplete) :: 105 of 145\nPseudo Genes (internal stop) :: 51 of 145\nPseudo Genes (multiple problems) :: 72 of 145\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5226
topology: circular
so has quality: SO_0000988
location: 1..5226
location: region:1-5226:1
RO_0002162: 574987

NZ_CP068425
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16268702
type: BioSample
SIO_000068: biosample

1
title: Gluconobacter sp. SJF2-1 genome sequence
author: Lee, K.
journal: Unpublished

2
title: Direct Submission
author: Lee, K.
journal: Submitted (18-JAN-2021) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5226:1
position: 5226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5226:1:source
so part of: sequence
organism: Gluconobacter sphaericus
mol type: genomic DNA
strain: SJF2-1
isolation source: Campbell Early grape
culture collection: KCTC:82305
plasmid: pSJF2-f
country: South Korea: Changwon
collection date: 2017-08

574987
type: Taxonomy
SIO_000068: taxonomy

IGS75_RS15330
type: Gene
subclass of: SO_0000704
RO_0002162: 574987
gene: mobQ
locus tag: IGS75_RS15330
old locus tag: IGS75_15330
so part of: sequence
location: 231..1301
location: region:231-1301:1
so has part: feature:231-1301:1:exon
subclass of: SO_0000010

position:231:1
position: 231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1301:1
position: 1301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231-1301:1:exon

IGS75_RS15330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 574987
gene: mobQ
locus tag: IGS75_RS15330
old locus tag: IGS75_15330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003631165.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHLSVKSISRSAGRSVVAAAAYRAGQELTDERQGLTHDYTRKQGVEDAFIVAPDGADWALDRNALWNAAEAAEKRKDAKTGREYELALPAELDVGVRKELARDFARELVERYGVVADVAIHEPGREGDNRNHHAHILTTTRTAGEDGLGAKTRVLDVASTASAEIEHMRGVWARQVNMALERHQVEQRVDHRSFERQGKEQEPTRHMGVSATAMERQAAREIPGREPVTDLGKQNAEIRERNRVLEAARKAVEKAQELFSGLEKKARQAVGLARKIGQRLEQQREAERQRQELARQAEIRRQQDIRAAEEVRKAAELERQKQRQKEAELVQSRGMSRGRSRGRDYDGGPGMGF
SIO_010081: IGS75_RS15330
subclass of: SO_0000673
so part of: IGS75_RS15330
location: 231..1301
location: region:231-1301:1
so has part: feature:231-1301:1:exon

WP_237469205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231-1301:1:exon

IGS75_RS15335
type: Gene
subclass of: SO_0000704
RO_0002162: 574987
locus tag: IGS75_RS15335
old locus tag: IGS75_15335
so part of: sequence
location: complement(1343..1951)
location: region:1343-1951:-1
so has part: feature:1343-1951:-1:exon
subclass of: SO_0000010

position:1343:-1
position: 1343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1951:-1
position: 1951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1343-1951:-1:exon

IGS75_RS15335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 574987
locus tag: IGS75_RS15335
old locus tag: IGS75_15335
inference: COORDINATES: protein motif:HMM:NF020786.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPAVREFQKLATEHGIDDIFQDNGGKILQMLLALNLQGIPGREGNDATDVEGREYELKSVNIWLTAGFSTNHHINIPIIEKYRKARWVFAIYEGIEMRRAFFMPAVKLETYFSAWEKKWTNEQKDINNPKIPLKFVCEHGECLYEDSKPLNLDAASAIRRERTKESANRRKAKAEAIADLKKDPTAGDNPVAVMRKQGKRAK
SIO_010081: IGS75_RS15335
subclass of: SO_0000673
so part of: IGS75_RS15335
location: complement(1343..1951)
location: region:1343-1951:-1
so has part: feature:1343-1951:-1:exon

WP_237469207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1343-1951:-1:exon

IGS75_RS15340
type: Gene
subclass of: SO_0000704
RO_0002162: 574987
locus tag: IGS75_RS15340
old locus tag: IGS75_15340
so part of: sequence
location: complement(1990..2211)
location: region:1990-2211:-1
so has part: feature:1990-2211:-1:exon
subclass of: SO_0000010

position:1990:-1
position: 1990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2211:-1
position: 2211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1990-2211:-1:exon

IGS75_RS15340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 574987
locus tag: IGS75_RS15340
old locus tag: IGS75_15340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019012433.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKTGSLNPAREALAANLRKARGERNLSQEALAELAGIHRNYLGGIERCERNVGLDNLQKLALALGVSVAELVD
SIO_010081: IGS75_RS15340
subclass of: SO_0000673
so part of: IGS75_RS15340
location: complement(1990..2211)
location: region:1990-2211:-1
so has part: feature:1990-2211:-1:exon

WP_202259194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1990-2211:-1:exon

IGS75_RS15345
type: Gene
subclass of: SO_0000704
RO_0002162: 574987
locus tag: IGS75_RS15345
old locus tag: IGS75_15345
so part of: sequence
location: 2281..3294
location: region:2281-3294:1
so has part: feature:2281-3294:1:exon
subclass of: SO_0000010

position:2281:1
position: 2281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3294:1
position: 3294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2281-3294:1:exon

IGS75_RS15345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 574987
locus tag: IGS75_RS15345
old locus tag: IGS75_15345
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006623970.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific DNA-methyltransferase
translation: MAGIQIEGLRPSYTTSGGAAFCGDSRELLARLPDESLDLVMTSPPFALQRHKAYGGLDQVEYLDWLIEFARLVYAKLKPTGSFVMDVGGAYQKGVPTRSLYHLRLPIRFCDEIGFFLAEDFYWFNPAKLPSPIEWVNKRKIRAKDSVNNLWWFSKSEWPKANTRKVLTPYSDRMIKLMEDPDKFYKPGMRPSGHDIGKGFAKNNGGAIPSNLLQIPNTESNGGYVAGCKLVGADRHPARFPSKLPEFFIRFLTDPGDTVLDIFAGSNTTGMVAEREGRRWLAFEDRQDYLAASVFRFLPKETPPEEMQSAFAAVSSGKSVDLTRYMPQVEMFNTAAE
SIO_010081: IGS75_RS15345
subclass of: SO_0000673
so part of: IGS75_RS15345
location: 2281..3294
location: region:2281-3294:1
so has part: feature:2281-3294:1:exon

WP_237469209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2281-3294:1:exon

IGS75_RS15350
type: Gene
subclass of: SO_0000704
RO_0002162: 574987
locus tag: IGS75_RS15350
old locus tag: IGS75_15350
so part of: sequence
location: complement(3376..3945)
location: region:3376-3945:-1
so has part: feature:3376-3945:-1:exon
subclass of: SO_0000010

position:3376:-1
position: 3376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3945:-1
position: 3945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3376-3945:-1:exon

IGS75_RS15350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 574987
locus tag: IGS75_RS15350
old locus tag: IGS75_15350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019087465.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRNVTRLKTRKDRLQEDQADLLKQALLPFADNGGAMGDAVGRLYVQIKNLTTPDPGTTEPFVMIRPAQNRAVTLWLMENSKRPMKAVSVWTLLFDHLMPHTGQVMLTREEIAEQVGVPVNHISQIMNELVAFGAIFSEREKIAGMRGPGLVRYYMNKHVAEVGSRATQDELALIPKPGANLEVVQGGKS
SIO_010081: IGS75_RS15350
subclass of: SO_0000673
so part of: IGS75_RS15350
location: complement(3376..3945)
location: region:3376-3945:-1
so has part: feature:3376-3945:-1:exon

WP_202259188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3376-3945:-1:exon

IGS75_RS15355
type: Gene
subclass of: SO_0000704
RO_0002162: 574987
locus tag: IGS75_RS15355
old locus tag: IGS75_15355
so part of: sequence
location: complement(4282..4818)
location: region:4282-4818:-1
so has part: feature:4282-4818:-1:exon
subclass of: SO_0000010

position:4282:-1
position: 4282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4818:-1
position: 4818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4282-4818:-1:exon

IGS75_RS15355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 574987
locus tag: IGS75_RS15355
old locus tag: IGS75_15355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006560191.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein
translation: MTNERELEDGLAAFDQLSREMAETNRLLRTVRSDQTIRSQQEHALSAEMQDALKQATEASQVALQASQTEIRSSLLWTGLTGLLTVLVAFGGGYFLGQRSGTEKGQAEGYQAARNEQAAASWANTPAGQRAYGLDRRGSLDMLSLCQGNGWTTERQKGGTVCFPNADAKGQVMGWYLP
SIO_010081: IGS75_RS15355
subclass of: SO_0000673
so part of: IGS75_RS15355
location: complement(4282..4818)
location: region:4282-4818:-1
so has part: feature:4282-4818:-1:exon

WP_202259190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4282-4818:-1:exon

IGS75_RS15360
type: Gene
subclass of: SO_0000704
RO_0002162: 574987
locus tag: IGS75_RS15360
old locus tag: IGS75_15360
so part of: sequence
location: complement(4815..5072)
location: region:4815-5072:-1
so has part: feature:4815-5072:-1:exon
subclass of: SO_0000010

position:4815:-1
position: 4815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5072:-1
position: 5072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4815-5072:-1:exon

IGS75_RS15360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 574987
locus tag: IGS75_RS15360
old locus tag: IGS75_15360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006560192.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MTPIEKAKQQVEQAKARYQALLARQNAEERKLDTRRKVILGGLLIDAAGKDERFGRVIDELMKRITRDHDHKAFEGWQKPEPDRS
SIO_010081: IGS75_RS15360
subclass of: SO_0000673
so part of: IGS75_RS15360
location: complement(4815..5072)
location: region:4815-5072:-1
so has part: feature:4815-5072:-1:exon

WP_006560192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4815-5072:-1:exon