Gluconobacter sphaericus strain SJF2-1 plasmid pSJF2-d, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.
Gluconobacter sp. SJF2-1 genome sequence
Submitted (18-JAN-2021) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP068423.1.\nBacteria and source DNA available from Prof. Kyoung Lee (KCTC\n82305).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nAssembly Name :: Gluconobacter sphaericus SJF2-1 Genome\n and Annotations\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 2870.0x\nSequencing Technology :: PacBio RSII; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 22:52:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,096\nCDSs (total) :: 3,024\nGenes (coding) :: 2,879\nCDSs (with protein) :: 2,879\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 145\nCDSs (without protein) :: 145\nPseudo Genes (ambiguous residues) :: 0 of 145\nPseudo Genes (frameshifted) :: 81 of 145\nPseudo Genes (incomplete) :: 105 of 145\nPseudo Genes (internal stop) :: 51 of 145\nPseudo Genes (multiple problems) :: 72 of 145\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_043766426.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007396235.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019088886.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013830.2
COORDINATES: protein motif:HMM:NF033580.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611353.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284172.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006116745.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011251571.1
COORDINATES: similar to AA sequence:RefSeq:WP_010517095.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505778.1
COORDINATES: similar to AA sequence:RefSeq:WP_017173693.1
COORDINATES: similar to AA sequence:RefSeq:WP_005934673.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918075.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505346.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010505344.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505343.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006560453.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006560454.1
type II toxin-antitoxin system VapC family toxin