Gluconobacter sphaericus strain SJF2-1 plasmid pSJF2-c, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.
Gluconobacter sp. SJF2-1 genome sequence
Submitted (18-JAN-2021) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP068422.1.\nBacteria and source DNA available from Prof. Kyoung Lee (KCTC\n82305).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nAssembly Name :: Gluconobacter sphaericus SJF2-1 Genome\n and Annotations\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 2870.0x\nSequencing Technology :: PacBio RSII; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 22:52:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,096\nCDSs (total) :: 3,024\nGenes (coding) :: 2,879\nCDSs (with protein) :: 2,879\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 145\nCDSs (without protein) :: 145\nPseudo Genes (ambiguous residues) :: 0 of 145\nPseudo Genes (frameshifted) :: 81 of 145\nPseudo Genes (incomplete) :: 105 of 145\nPseudo Genes (internal stop) :: 51 of 145\nPseudo Genes (multiple problems) :: 72 of 145\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008850330.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012226392.1
ATP-binding cassette domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012553005.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611353.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013267749.1
COORDINATES: similar to AA sequence:RefSeq:WP_011252587.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
D-glycero-beta-D-manno-heptose-7-phosphate kinase
COORDINATES: similar to AA sequence:RefSeq:WP_003616678.1
COORDINATES: similar to AA sequence:RefSeq:WP_015072669.1
COORDINATES: similar to AA sequence:RefSeq:WP_043766426.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020048147.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012553980.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560454.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006560453.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010505346.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007425127.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505781.1
COORDINATES: similar to AA sequence:RefSeq:WP_012817667.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505778.1
COORDINATES: similar to AA sequence:RefSeq:WP_010517095.1
COORDINATES: similar to AA sequence:RefSeq:WP_015073739.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007283828.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088886.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019089521.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003623399.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010502909.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011970870.1
COORDINATES: similar to AA sequence:RefSeq:WP_014105796.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: similar to AA sequence:RefSeq:WP_012553276.1