Gluconobacter sphaericus strain SJF2-1 plasmid pSJF2-b, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.
Gluconobacter sp. SJF2-1 genome sequence
Submitted (18-JAN-2021) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP068421.1.\nBacteria and source DNA available from Prof. Kyoung Lee (KCTC\n82305).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nAssembly Name :: Gluconobacter sphaericus SJF2-1 Genome\n and Annotations\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 2870.0x\nSequencing Technology :: PacBio RSII; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 22:52:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,096\nCDSs (total) :: 3,024\nGenes (coding) :: 2,879\nCDSs (with protein) :: 2,879\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 145\nCDSs (without protein) :: 145\nPseudo Genes (ambiguous residues) :: 0 of 145\nPseudo Genes (frameshifted) :: 81 of 145\nPseudo Genes (incomplete) :: 105 of 145\nPseudo Genes (internal stop) :: 51 of 145\nPseudo Genes (multiple problems) :: 72 of 145\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012563433.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: similar to AA sequence:RefSeq:WP_006557507.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611552.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014104060.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023228.2
COORDINATES: similar to AA sequence:RefSeq:WP_015074983.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611345.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007283304.1
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611557.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019088886.1
COORDINATES: similar to AA sequence:RefSeq:WP_015075059.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015075060.1
COORDINATES: similar to AA sequence:RefSeq:WP_015075061.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
autotransporter strand-loop-strand O-heptosyltransferase
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012779117.1
COORDINATES: similar to AA sequence:RefSeq:WP_008852967.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074850.1
COORDINATES: similar to AA sequence:RefSeq:WP_007397868.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074852.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074853.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528241.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115744.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_011545911.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074634.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528734.1
COORDINATES: similar to AA sequence:RefSeq:WP_003617730.1
COORDINATES: similar to AA sequence:RefSeq:WP_013209829.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_003617735.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003619008.1
COORDINATES: similar to AA sequence:RefSeq:WP_003619005.1
COORDINATES: similar to AA sequence:RefSeq:WP_004905479.1
COORDINATES: similar to AA sequence:RefSeq:WP_015073780.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511755.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF023737.2
sugar dehydrogenase complex small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017494333.1
COORDINATES: similar to AA sequence:RefSeq:WP_012652757.1
COORDINATES: protein motif:HMM:NF016830.2
GO:0015288 - porin activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011251474.1
COORDINATES: similar to AA sequence:RefSeq:WP_015073828.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]
zinc-binding alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007396592.1
COORDINATES: similar to AA sequence:RefSeq:WP_015075042.1
COORDINATES: similar to AA sequence:RefSeq:WP_004206952.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_011439428.1
COORDINATES: similar to AA sequence:RefSeq:WP_015847737.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020163984.1
COORDINATES: similar to AA sequence:RefSeq:WP_007802487.1
COORDINATES: similar to AA sequence:RefSeq:WP_008066910.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015074857.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074858.1
COORDINATES: similar to AA sequence:RefSeq:WP_015075016.1
COORDINATES: similar to AA sequence:RefSeq:WP_015075017.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505505.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505504.1
COORDINATES: similar to AA sequence:RefSeq:WP_010667503.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003618841.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251460.1
COORDINATES: similar to AA sequence:RefSeq:WP_015951914.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007598189.1
COORDINATES: similar to AA sequence:RefSeq:WP_011534713.1
GO:0008824 - cyanate hydratase activity [Evidence IEA]
GO:0009636 - response to toxic substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015075036.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011251479.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505263.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010505265.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074885.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074886.1
COORDINATES: similar to AA sequence:RefSeq:WP_020811217.1
COORDINATES: similar to AA sequence:RefSeq:WP_011078127.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505019.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505020.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015074899.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251427.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040700.1
VPA1262 family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010504838.1
COORDINATES: similar to AA sequence:RefSeq:WP_016738627.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015074904.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015074905.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074906.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737617.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074909.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074910.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016738683.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074913.1
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015074914.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074915.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074916.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074917.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015074918.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074920.1
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015074921.1
COORDINATES: similar to AA sequence:RefSeq:WP_010515883.1
COORDINATES: similar to AA sequence:RefSeq:WP_006203051.1
COORDINATES: similar to AA sequence:RefSeq:WP_012812328.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012553267.1