Gluconobacter sphaericus strain SJF2-1 plasmid pSJF2-a, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.
Gluconobacter sp. SJF2-1 genome sequence
Submitted (18-JAN-2021) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP068420.1.\nBacteria and source DNA available from Prof. Kyoung Lee (KCTC\n82305).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nAssembly Name :: Gluconobacter sphaericus SJF2-1 Genome\n and Annotations\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 2870.0x\nSequencing Technology :: PacBio RSII; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 22:52:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,096\nCDSs (total) :: 3,024\nGenes (coding) :: 2,879\nCDSs (with protein) :: 2,879\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 145\nCDSs (without protein) :: 145\nPseudo Genes (ambiguous residues) :: 0 of 145\nPseudo Genes (frameshifted) :: 81 of 145\nPseudo Genes (incomplete) :: 105 of 145\nPseudo Genes (internal stop) :: 51 of 145\nPseudo Genes (multiple problems) :: 72 of 145\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011251427.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010505026.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505028.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251424.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505032.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251422.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010518053.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092698.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611345.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015074905.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251419.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010511887.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505047.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251415.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251414.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251413.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251412.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011251410.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010505063.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251408.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251395.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251394.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251393.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505514.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251390.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074922.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737891.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015074929.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504850.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504849.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251534.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251533.1
COORDINATES: similar to AA sequence:RefSeq:WP_019463315.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611976.1
COORDINATES: similar to AA sequence:RefSeq:WP_003627068.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553267.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014104060.1
COORDINATES: similar to AA sequence:RefSeq:WP_007398020.1
COORDINATES: protein motif:HMM:NF019042.2
COORDINATES: protein motif:HMM:NF015509.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03125.1
GO:0046917 - triphosphoribosyl-dephospho-CoA synthase activity [Evidence IEA]
GO:0019361 - 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process [Evidence IEA]
triphosphoribosyl-dephospho-CoA synthase CitG
COORDINATES: protein motif:HMM:TIGR03124.1
GO:0050519 - holo-citrate lyase synthase activity [Evidence IEA]
GO:0051191 - prosthetic group biosynthetic process [Evidence IEA]
citrate lyase holo-[acyl-carrier protein] synthase
COORDINATES: similar to AA sequence:RefSeq:WP_012976257.1
GO:0009346 - ATP-independent citrate lyase complex [Evidence IEA]
GO:0008815 - citrate (pro-3S)-lyase activity [Evidence IEA]; GO:0008814 - citrate CoA-transferase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018609791.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015963047.1
GO:0008815 - citrate (pro-3S)-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00124.1
GO:0008771 - [citrate (pro-3S)-lyase] ligase activity [Evidence IEA]
GO:0006101 - citrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018042295.1
lipocalin-like domain-containing protein
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000122735.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010505238.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074995.1
COORDINATES: similar to AA sequence:RefSeq:WP_016738516.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074993.1
GO:0004333 - fumarate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014104098.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611353.1
COORDINATES: protein motif:HMM:NF033563.0
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: protein motif:HMM:NF037528.2
COORDINATES: similar to AA sequence:RefSeq:WP_015074904.1
COORDINATES: similar to AA sequence:RefSeq:WP_016738627.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010504838.1
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_010505505.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010505504.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010667503.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003618841.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251460.1
COORDINATES: protein motif:HMM:NF033580.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025638.2
COORDINATES: similar to AA sequence:RefSeq:WP_006115735.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015075038.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF013698.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: protein motif:HMM:NF024966.2
COORDINATES: similar to AA sequence:RefSeq:WP_007769602.1
COORDINATES: protein motif:HMM:NF028169.2
COORDINATES: similar to AA sequence:RefSeq:WP_012553060.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611842.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013383155.1
COORDINATES: similar to AA sequence:RefSeq:WP_008435597.1
COORDINATES: protein motif:HMM:NF023737.2
sugar dehydrogenase complex small subunit
COORDINATES: protein motif:HMM:NF016830.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015862.2
COORDINATES: similar to AA sequence:RefSeq:WP_012553139.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612315.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
transposase zinc-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_017642659.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015671543.1
COORDINATES: similar to AA sequence:RefSeq:WP_015671544.1
COORDINATES: similar to AA sequence:RefSeq:WP_014402513.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089388.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019091967.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010968496.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511786.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618819.1
COORDINATES: similar to AA sequence:RefSeq:WP_011252870.1
phosphate-starvation-inducible PsiE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010505630.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088886.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396235.1
COORDINATES: similar to AA sequence:RefSeq:WP_010515928.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008851015.1
COORDINATES: similar to AA sequence:RefSeq:WP_010666563.1
Tm-1-like ATP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010666564.1
phosphoenolpyruvate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010504641.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074353.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074873.1
COORDINATES: similar to AA sequence:RefSeq:WP_012331280.1
COORDINATES: similar to AA sequence:RefSeq:WP_015074875.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246270.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339608.1
COORDINATES: similar to AA sequence:RefSeq:WP_013934811.1
COORDINATES: similar to AA sequence:RefSeq:WP_014456911.1
COORDINATES: similar to AA sequence:RefSeq:WP_019087992.1
COORDINATES: similar to AA sequence:RefSeq:WP_014456913.1
COORDINATES: similar to AA sequence:RefSeq:WP_019086847.1
COORDINATES: similar to AA sequence:RefSeq:WP_010517678.1
COORDINATES: similar to AA sequence:RefSeq:WP_013639484.1
COORDINATES: similar to AA sequence:RefSeq:WP_007424767.1
COORDINATES: similar to AA sequence:RefSeq:WP_007424768.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400173.1
COORDINATES: similar to AA sequence:RefSeq:WP_013343353.1
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_012628810.1
MOSC N-terminal beta barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012382543.1
COORDINATES: similar to AA sequence:RefSeq:WP_018917126.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010665916.1
COORDINATES: similar to AA sequence:RefSeq:WP_009469659.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003617534.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020431.2
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: similar to AA sequence:RefSeq:WP_011391234.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006557247.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630065.1
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
molybdenum cofactor biosynthesis protein B
COORDINATES: similar to AA sequence:RefSeq:WP_015075052.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505683.1
COORDINATES: similar to AA sequence:RefSeq:WP_012037809.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019527365.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010505684.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_014457275.1
COORDINATES: similar to AA sequence:RefSeq:WP_020065232.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017847368.1
COORDINATES: similar to AA sequence:RefSeq:WP_004273595.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553548.1
COORDINATES: similar to AA sequence:RefSeq:WP_010516316.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019516786.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251437.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612188.1
COORDINATES: similar to AA sequence:RefSeq:WP_008852967.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251434.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630807.1
COORDINATES: similar to AA sequence:RefSeq:WP_008852970.1
COORDINATES: protein motif:HMM:TIGR00180.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505020.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011251538.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251539.1