Microvirgula aerodenitrificans strain BE2.4 plasmid unnamed2.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Microvirgula.
Submitted (04-APR-2018) Soil, Water and Climate, University of Minnesota, 1475 Gortner Ave, St Paul, MN 55108, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP028518.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2018\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 21:31:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,898\nCDSs (total) :: 3,813\nGenes (coding) :: 3,742\nCDSs (with protein) :: 3,742\nGenes (RNA) :: 85\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 62\nncRNAs :: 4\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 0 of 71\nPseudo Genes (frameshifted) :: 40 of 71\nPseudo Genes (incomplete) :: 36 of 71\nPseudo Genes (internal stop) :: 3 of 71\nPseudo Genes (multiple problems) :: 7 of 71\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR00254.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019718077.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
tRNA dihydrouridine(20/20a) synthase DusA
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_008954895.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]