Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-4, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.
Pandoraea oxalativorans DSM 23570 Genome Sequencing
Submitted (15-JUN-2016) Division of Genetics and Molecular Biology, Institute of Biological Sciences, University of Malaya, Kuala Lumpur 50603, Malaysia
Submitted (20-MAY-2015) Division of Genetics and Molecular Biology, Institute of Biological Sciences, University of Malaya, Jalan Universiti, Kuala Lumpur, Wilayah Persekutuan Kuala Lumpur 50603, Malaysia
REFSEQ INFORMATION: The reference sequence is identical to\nCP011521.2.\n\nOn Jul 3, 2016 this sequence version replaced NZ_CP011521.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 05:44:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,779\nCDSs (total) :: 5,695\nGenes (coding) :: 5,360\nCDSs (with protein) :: 5,360\nGenes (RNA) :: 84\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 6\nPseudo Genes (total) :: 335\nCDSs (without protein) :: 335\nPseudo Genes (ambiguous residues) :: 0 of 335\nPseudo Genes (frameshifted) :: 105 of 335\nPseudo Genes (incomplete) :: 280 of 335\nPseudo Genes (internal stop) :: 36 of 335\nPseudo Genes (multiple problems) :: 72 of 335\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007182933.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007182934.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182935.1
COORDINATES: similar to AA sequence:RefSeq:WP_019692589.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182937.1
VirB3 family type IV secretion system protein
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: protein motif:HMM:NF041289.1
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000960954.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875501.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020227828.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052942.1
COORDINATES: similar to AA sequence:RefSeq:WP_018413498.1
ParC family partition-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_013124617.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918230.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335482.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019950801.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010969926.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006414857.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012733728.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018420717.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011000219.1
COORDINATES: similar to AA sequence:RefSeq:WP_007860235.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007182949.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611088.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182951.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182918.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007182920.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182926.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182929.1
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein