Thermothelomyces thermophilus ATCC 42464 chromosome 7, complete sequence.
Thermothelomyces thermophilus ATCC 42464
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Chaetomiaceae; Thermothelomyces.
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris
Submitted (27-NOV-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (08-AUG-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP003008.\nURL -- http://www.jgi.doe.gov/fungi\nJGI Project ID: 4043098\nThe DNA was provided by Adrian Tsang (tsang@gene.concordia.ca)\nThe strain is available from the American Type Culture Collection\nunder ATCC 42464\nContacts: Adrian Tsang (tsang@gene.concordia.ca)\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAssembly and annotation done by JGI.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\n\nProteins in region determined to be rRNA/ITS were removed by\ndatabase staff.\n\n##Metadata-START##\nOrganism Display Name :: Myceliophthora thermophila ATCC 42464\nGOLD Stamp ID :: Gi01755\nAssembly Method :: Arachne v.20071016\nAssembly Name :: Myceliophthora thermophila V2.0\nSequencing Technology :: Sanger\nSequencing Depth :: 7.66x\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Contains conserved domain WD40[cd00200], WD40 domain
102] Contains conserved domain COG5162[COG5162], Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA)
Contains conserved domain pfam11699: Mif2 Mif2 is a yeast DNA-binding kinetochore protein which is orthologous to mammalian CENP-C.
Contains conserved domain COG5531[COG5531], SWIB-domain-containing proteins implicated in chromatin remodeling.
1| AAA family ATPase Pontin [Metarhizium acridum CQMa 102] Contains conserved domain TIP49[COG1224], DNA helicase TIP49, TBP-interacting protein and AAA[cd00009], The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily
Contains conserved domain: pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) protein
Contains conserved domain TRF[pfam08558], Telomere repeat binding factor (TRF) and SANT[smart00717], SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Coproporphyrinogen III oxidase-like protein
Contains conserved domains Hist_deacetyl[pfam00850], pfam09757: Arb2 A second fission yeast Argonaute complex (Argonaute siRNA chaperone, ARC) that contains two previously uncharacterized proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation.
4-hydroxyphenylpyruvate dioxygenase-like protein
gamma-glutamyltranspeptidase-like protein
Contains conserved domain: WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly. 7 copies of the repeat are present
Contains conserved domains: pfam05712, MRG, It is thought that the MRG family is involved in transcriptional regulation via histone acetylation. It contains 2 chromo domains and a leucine zipper motif; smart00298, CHROMO, Chromatin organization modifier domain and pfam11717: Tudor-knot This is a novel knotted tudor domain which is required for binding to RNA.
orthologue of FAD-containing phenol hydroxylase from Trichosporn cutaneum
carbohydrate-binding module family 1 protein