Thermothelomyces thermophilus ATCC 42464 chromosome 2, complete sequence.
Thermothelomyces thermophilus ATCC 42464
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Chaetomiaceae; Thermothelomyces.
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris
Submitted (27-NOV-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (08-AUG-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP003003.\nURL -- http://www.jgi.doe.gov/fungi\nJGI Project ID: 4043098\nThe DNA was provided by Adrian Tsang (tsang@gene.concordia.ca)\nThe strain is available from the American Type Culture Collection\nunder ATCC 42464\nContacts: Adrian Tsang (tsang@gene.concordia.ca)\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAssembly and annotation done by JGI.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Metadata-START##\nOrganism Display Name :: Myceliophthora thermophila ATCC 42464\nGOLD Stamp ID :: Gi01755\nAssembly Method :: Arachne v.20071016\nAssembly Name :: Myceliophthora thermophila V2.0\nSequencing Technology :: Sanger\nSequencing Depth :: 7.66x\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Contains conserved domain Smc[COG1196], Chromosome segregation ATPases
Contains conserved domains CHROMO[smart00298], Chromatin organization modifier domain, rve[pfam00665], Integrase core domain and RNase_H[cd06222].
hypothetical myo-inositol-1-phosphate synthase
Delta(24(24(1)))-sterol reductase like protein
orthologue of Saccharomyces cerevisiae ERG4p; orthologue of S. cerevisiae ERG4p
1| putative SMC1 protein [Sordaria macrospora] Contains conserved domain Smc[COG1196], Chromosome segregation ATPases
Contains conserved domains NDT80_PhoG[pfam05224] NDT80 / PhoG like DNA-binding family and PAT1[pfam09770], necessary for accurate chromosome transmission
orthologue of Saccharomyces cerevisiae Erg12
Also has a glycine-glutamic acid rich string (25/30)
Contains conserved domains: COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family; cd05163, TRRAP, TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; and pfam02259, FAT, FAT domain
nucleosome assembly protein-like protein
Contains conserved domain pfam00956: NAP Nucleosome assembly protein (NAP) NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. Contains conserved domain pfam00956: NAP Nucleosome assembly protein (NAP) NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity
MID1, a plasma membrane protein, is required for Ca2+ influx and mating
Contains conserved domains pfam12265: CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex and WD40[cd00200], WD40 domain.
orthologue of farnesyl diphosphate synthetase from Saccharomyces cerevisiae; orthologue of farnesyl diphosphate synthetase from S. cerevisiae
Ferritin/ribonucleotide reductase-like-protein
Contains conserved domains SET_assoc[pfam11767], SET domains are protein lysine methyltransferase enzyme and N-SET[pfam11764], The n-SET or N-SET domain is a component of the COMPASS complex and SET[smart00317], Putative methyl transferase
1| transcription initiation factor TFIID complex 60 kDa subunit [Metarhizium anisopliae ARSEF 23] Contains conserved domain TAF6[COG5095], Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA)
fumarate reductase/succinate dehydrogenase flavo protein-like protein
carbohydrate-binding module family 18 protein
Extracellular membrane-like protein (8-cysteine region, CFEM)
pyridine nucleotide-disulfide oxidoreductase-like protein
hypothetical pyridine nucleotide-disulphide oxidoreductase
histone acetyltransferase ELP3-like protein
1| ELP3 family histone acetyltransferase [Glomerella graminicola M1. 001] Contains conserved domain Radical_SAM[cd01335], Radical SAM superfamily. ELP3[COG1243], Histone acetyltransferase and Acetyltransf_1[pfam00583], Acetyltransferase (GNAT) family
3|INO80_NEUCR RecName: Full=Putative DNA helicase ino-80. Contains conserved domains DEXDc[smart00487], DEAD-like helicases superfamily. PHA03307[PHA03307], transcriptional regulator ICP4 and HELICc[cd00079], Helicase superfamily c-terminal domain
This is fungal specific cysteine rich domain
flavo protein pyridine nucleotide cytochrome reductase-like protein
Flavoprotein pyridine nucleotide cytochrome reductase-like protein
1|EPL1_NEUCR RecName: Full=Enhancer of polycomb-like protein 1. Contains conserved domain EPL1[pfam10513]. This is a family of EPL1 (Enhancer of polycomb-like) proteins
carbohydrate-binding module family 48 protein
Contains conserved domain SKIP_SNW[pfam02731], This domain is found in chromatin proteins.
Has EST support. expressed more highly at 34C
Contains conserved domain WD40[cd00200], WD40 domain
Contains conserved domain ACTIN[smart00268], Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
orthologue of Saccharomyces cerevisiae ERG2p; orthologue of S. cerevisiae ERG2p
Contains conserved domain: pfam10516, SHNi-TPR. SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat. It mediates protein-protein interactions and the assembly of multiprotein complexes.
fungal transcriptional regulatory-like protein
sphingolipid delta-4 desaturase like protein
orthologue of sphingolipid delta-4 desaturase from A. thaliana; orthologue of sphingolipid delta-4 desaturase from A. thaliana
Contains conserved domain Arrestin_N[pfam00339], Ig-like beta-sandwich fold.
Intradiol ring-cleavage dioxygenase-like protein
1| actin [Verticillium albo-atrum VaMs. 102] Contains conserved domain Actin[pfam00022], Actin
MFS general substrate transporter-like protein
polyketide synthase/non-ribosomal peptide synthetase hybrid