Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant9, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant9, whole genome shotgun sequence.
sequence version: NZ_CM008795.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008795.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008795.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 29085
topology: circular
so has quality: SO_0000988
location: 1..29085
location: region:1-29085:1
RO_0002162: 573658

NZ_CM008795
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29085:1
position: 29085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29085:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant9
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS01865
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01865
old locus tag: magtdc_79
so part of: sequence
location: complement(523..4485)
location: region:523-4485:-1
so has part: feature:523-4485:-1:exon
subclass of: SO_0000010

79947768
type: Gene
SIO_000068: ncbigene

position:523:-1
position: 523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4485:-1
position: 4485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:523-4485:-1:exon

MAGTDC_RS01865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01865
old locus tag: magtdc_79
inference: COORDINATES: protein motif:HMM:NF016859.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFNKRILSIKFEIASAETILSWSYGEVRNGSSFDGDGKPVIDGLFCPKIFGSRNKTECLCKKPTLIQPFGCMVCGMYFGGSKLKLRSRFGHICLATPMVHTLFYKTMPNVLGSLLNMDVGTIRDLIGCKLHVIKWCGSEEFESGQIISTETYRKLWMKTENYEVVSSGEAILLLLSKIRLKEVKQFLIDSKRNVELVEMLEDIHSRIEIIDWFINNKMSLDLMVIKVLPVLPAELRPSVVLDDNTQASSDLNVLYKGIINVNNVVVRNMEQRQHGVIDVDEYIMGIERLQRSVDSLIDNSQRLDGPAGYNIGALKSLTEMLKGKRGRFRHNVLGKRVDYSGRSVIVPGPDLSINECAIPRSMAVELFEPFIYSKLMLESKIRGHRNIKYLLGCDQQMGYKVLEEIVKYCPVVLNRAPTLHKLSMRAFWVKLTNEKVIRLHPLVCSGFNADFDGDQMAVHVPLSLKARIEVTTLLMTENNVFHPAHGDPCILPSQDMILGLYYMSLTSTEQKDVLFSSYVEVTKALEYKKTNLHTKVKFTTIKNNIRVTVFTTPGRLLISELVPSKCNFIYEWDDPGFSKPFILDVIEMVNKTCGQQQMVTFCECLMKMGLKYVTQSGLSLSRSEFGTSSYKRILLKNVRSVINKSWFGITNKTKIPMFWTIWHKILTSIYDNINLETYGNSLKQTAIQMIVNSGARGTVQQVQQLFGSRGYVVGFNGQRSRIPILNSYNEGLNLIQLFCCTYSSRRGLMDTALKTASSGYLTRKLVESTREWVIDEVDCCTNDGLCVNPVIDLEYIKHRLIGRFLLRDILSNGLVIARKNELITVKNINKVLLRCGNQLWIRSPLTCQATSGVCKFCYGIELSTGNMVQHGDSVGILAAQSIGEPGTQLTLRTFHGLTETDHRKHTQNLNTCLTSPFSGVIRIELLSCVCSDDFDMIVTTSECTLSILREGNKIWSYKLSRGTRLLVHDNEYVHVGGILCLNSVRSNSILVLTNGIITFECLKYGLNLYKINNNNYNFIGKYIKTKLLTNKIPLVCLRSGRCIKLCCSSVWDKINFLVKPSSNVEAFDVLFEVVFNYKVNNEVVLTGGFERLSKLLDNGIAEDNEAIICNTNSILRYGTNGRGNGTFVIDPMRLNEWPLVISGVNVETFVDANKMMQRGRIVIPGEIDLLNYVEVYGLNRFNNYFVDTVQEIYNEQGVNVNSKHIEMVLRQMTNIVNISDPGDSTLNINNNYGWQHVARTNRYVNILGGRLATGRRSITGVTKSCIKEGSILSTVSFQGSMKPVIKALLSGNDYRVTDIKDRIILGKLPLIGTGYTTSKQ
SIO_010081: MAGTDC_RS01865
subclass of: SO_0000673
so part of: MAGTDC_RS01865
location: complement(523..4485)
location: region:523-4485:-1
so has part: feature:523-4485:-1:exon

WP_146656822.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:523-4485:-1:exon

MAGTDC_RS01870
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01870
old locus tag: magtdc_80
so part of: sequence
location: complement(4496..8449)
location: region:4496-8449:-1
so has part: feature:4496-8449:-1:exon
subclass of: SO_0000010

79947769
type: Gene
SIO_000068: ncbigene

position:4496:-1
position: 4496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8449:-1
position: 8449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4496-8449:-1:exon

MAGTDC_RS01870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01870
old locus tag: magtdc_80
inference: COORDINATES: protein motif:HMM:NF012771.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLWWVEGKYLKDRISLDGTIDGMSVLNQRGVQERLYNNVLWGYYNDKGIKISKLELNIRGLFPLDIGHWRLEYGKVDICVLSRTTNVFGLILDVVQYLIDKKITFISQRLELSIPLVALPSLSEDNSVLVDGIKKTLVMQLIRDITVMFDRDTGEINMVTRSLKRLEIQGSRIKYGNCESDIFVTLLFLKSKYSHILKNILELQQLVYFSGRWRKLNWTTSDLNINGSKYGQRRLFRQTKTMTGCCCKNKITSACFVIDRSGNTVINMGDELDLDTNLALKHVSVLRITETSKSSVLKLLKGIGRLINSNSCWRSDIGSDNIKDVDLTLNGRYFLNDITCNNQDFGLDLLTKKDLISIWNRYVIERINLRPINCDVKVIKGSGDYLVDVIYSSLSNVLNLWVAKQSLEQPREPIMFDSDNVVIKGLLEVNVGIQKRVNKYFNSSDLCQYSDQVNSLSRLSHENKLTCLGEGGLTQQNADNYARDTKIWHYGKICPIESPEGQNIGLILSLAFCSNVDVNGHIITGYFKTYNGLISNNVVYLNYYECKCLKVSLPHWNDLSKQVLCLYQDTTVVVDKRSVDLTLISEAQVFSSAVCLIPFLGHNDPTRALMAANMLKQAIPLLKPQVPLIGTGEEYNVMRSTRDNVIASDDGMVVSVDSSRVLVYEPKKRRHRVYILSVIKKTNQETCQRIRAVVNPGQMVRSGDVIAECQSSCDGEMSLGANLLVAFMCWHGYNFEDSVILSENVINKGIFKSLHIIDLETTVMKTEHGDEWLSADINEIPMKYRKHLDSNGVVKEGSTVQEGDVLVGKLILKNNRQEDKGVFLDVGKDIERIKQGNNKIIRISEDDRSDQLSGLDGKQGVDVGKWSNKSDVSGLISNINDDDDGGYGVDSVGGDGDNETFNDLLSNVSLRVPNGIDSATVMEVKRVRPNEEEGGYDGAYEECLFHFNMITKKYIRRCTSLLQRNVTDCFSIKLPFTSEDKYIRNALSFLFKHYLNHIHKIEDILLEKMTKRLVTANPDDESKVLEVIKIKLFVKRSIKVGDKVCGRHGNKGVISRIVPKEDMPFMADGTPIDIILNPLGIPSRMNIGQILETNFGLVSYKLGLEFKDVLNMYNKTNDDRILKRVIPKLTELYPNINNLTKDMILILLAELSQGVKISCPLVKFPFESCLKDFNNRLLIKTNDKIQLYDGMTGLPLKDKTTVGIIYMFKLNHLIDDKLHARSIGPYSIVTQQPLKGKSHKGGQRLGEMEVWALQSYGVSYFLRESITVRCDDMLARNEIRDGIMHGDLRCKTYHNEGILVVIKELFAMCIDIKLKTE
SIO_010081: MAGTDC_RS01870
subclass of: SO_0000673
so part of: MAGTDC_RS01870
location: complement(4496..8449)
location: region:4496-8449:-1
so has part: feature:4496-8449:-1:exon

WP_278046924.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4496-8449:-1:exon

MAGTDC_RS01875
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01875
old locus tag: magtdc_81
so part of: sequence
location: complement(11532..12434)
location: region:11532-12434:-1
so has part: feature:11532-12434:-1:exon
subclass of: SO_0000010

79947770
type: Gene
SIO_000068: ncbigene

position:11532:-1
position: 11532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12434:-1
position: 12434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11532-12434:-1:exon

MAGTDC_RS01875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01875
old locus tag: magtdc_81
inference: COORDINATES: protein motif:HMM:NF013237.2
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO process: GO:0019346 - transsulfuration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: PLP-dependent transferase
translation: MDKRMEFTLTLQALSIIYNKFVKDQVIRNKPSPVASGSTKTNSQPQVSLPVRNLCSVISILEYSDSTILTSTRLTATTLMMLCLLNPGDHVLITDTICYSLKQLCNVLSKLNINVDFFNHRDEYSLKTLFRADTKLIYLESSCSEISDIGSINGICKYVRKRSDKCIISMDNSRTTPLVYKPLIHGVDVSICNLSKYLIKRPNTDLTSISTTKALSHIFIKFNDLVDLTWDNNDLLSVVDSLKSLFFRLVHRYNMFMGFYRYLYAVRYLRRAVCSVLQTSSDHKFWQQIVNSETIQHPLS
SIO_010081: MAGTDC_RS01875
subclass of: SO_0000673
so part of: MAGTDC_RS01875
location: complement(11532..12434)
location: region:11532-12434:-1
so has part: feature:11532-12434:-1:exon

WP_146656824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11532-12434:-1:exon

MAGTDC_RS04605
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04605
so part of: sequence
location: complement(13252..13410)
location: region:13252-13410:-1
so has part: feature:13252-13410:-1:exon
subclass of: SO_0000010

79948204
type: Gene
SIO_000068: ncbigene

position:13252:-1
position: 13252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13410:-1
position: 13410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13252-13410:-1:exon

MAGTDC_RS04605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFTELIKTYSIIVDVLPLSSGIKLCITSELRSEVGSSISWSGACLTVVVGNE
SIO_010081: MAGTDC_RS04605
subclass of: SO_0000673
so part of: MAGTDC_RS04605
location: complement(13252..13410)
location: region:13252-13410:-1
so has part: feature:13252-13410:-1:exon

WP_192573079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13252-13410:-1:exon

MAGTDC_RS01885
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01885
so part of: sequence
location: complement(14434..14814)
location: region:14434-14814:-1
so has part: feature:14434-14814:-1:exon
subclass of: SO_0000010

79947771
type: Gene
SIO_000068: ncbigene

position:14434:-1
position: 14434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14814:-1
position: 14814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14434-14814:-1:exon

MAGTDC_RS01885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01885
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MMLMFLYSLKDDRWMMFYLTILLVILLNLTQKDGTVYNKHRIDGDGEKDDGDEGEGGDKRAEDENTDDDDDDNDDDDVDDYDTDDYDTDDADDAADAADDDADGDADDTADADDNDDGTTKRCTRK
SIO_010081: MAGTDC_RS01885
subclass of: SO_0000673
so part of: MAGTDC_RS01885
location: complement(14434..14814)
location: region:14434-14814:-1
so has part: feature:14434-14814:-1:exon

WP_192573080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14434-14814:-1:exon

MAGTDC_RS01890
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01890
so part of: sequence
location: complement(14979..15209)
location: region:14979-15209:-1
so has part: feature:14979-15209:-1:exon
subclass of: SO_0000010

79947772
type: Gene
SIO_000068: ncbigene

position:14979:-1
position: 14979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15209:-1
position: 15209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14979-15209:-1:exon

MAGTDC_RS01890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKIGCLVKHDNNDSDMLNPKYNVHTLNPSHANITNDNRSACCKHLMKHICMAVALSRWLNMDMNDQCNNYSEILSV
SIO_010081: MAGTDC_RS01890
subclass of: SO_0000673
so part of: MAGTDC_RS01890
location: complement(14979..15209)
location: region:14979-15209:-1
so has part: feature:14979-15209:-1:exon

WP_146656827.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14979-15209:-1:exon

MAGTDC_RS01895
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01895
old locus tag: magtdc_82
so part of: sequence
location: complement(15634..16923)
location: region:15634-16923:-1
so has part: feature:15634-16923:-1:exon
subclass of: SO_0000010

79947773
type: Gene
SIO_000068: ncbigene

position:15634:-1
position: 15634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16923:-1
position: 16923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15634-16923:-1:exon

MAGTDC_RS01895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01895
old locus tag: magtdc_82
EC number: 2.1.2.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020178911.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: serine hydroxymethyltransferase
translation: MNVVTVNPLFKTSLSTLDVLVESILKNELIRQTTSLNLIASENLVSKAVLEAQNNVFINKYAEGYPGSRYYGGCMFADELEKVAIDRAKRLFKCEYANVQPHSGSQMNQAVMLALLSPGDTIMGMDLKCGGHLTHGSTVNISGMWFKSVSYGVDLKTGTIDMNEVLNVAIRHRPKLIIAGTTSYPRTIDWKAFRRVADIVDSFLLADISHVAGLIVTGLQPSPIDHCDVVTTTTHKSLRGPRGGLILSNKRELFNRLSNAVFPGLQGGPMMNIIAAKAVAFLEAQQDEYRIWTKSVVENAKAMVERFKNKKIDIVSNGTDNHLVMIDLKNLGITGKQVASWLDRCYITANKNTIPNDLLSANTTSGLRLGTCACTSRGLKKEDFERVADMIADVLLEIKDKGEVSLPLETRTRMEVLDLADKYPICYNV
SIO_010081: MAGTDC_RS01895
subclass of: SO_0000673
so part of: MAGTDC_RS01895
location: complement(15634..16923)
location: region:15634-16923:-1
so has part: feature:15634-16923:-1:exon

WP_146656828.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15634-16923:-1:exon

MAGTDC_RS01900
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsL
locus tag: MAGTDC_RS01900
old locus tag: magtdc_83
so part of: sequence
location: complement(17203..17586)
location: region:17203-17586:-1
so has part: feature:17203-17586:-1:exon
subclass of: SO_0000010

79947774
type: Gene
SIO_000068: ncbigene

position:17203:-1
position: 17203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17586:-1
position: 17586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17203-17586:-1:exon

MAGTDC_RS01900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsL
locus tag: MAGTDC_RS01900
old locus tag: magtdc_83
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007557018.1
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S12
translation: MTINQLIKERRRQNTKKSNTSALNGTPFRSGICIRVYVTTPKKPNSALRRVAKVKLCNGKKIIAYIPGERHNLQEHSVVIVRGGRVKDLPGVRYHLVKGLLDLNCVEGRKNSRSKYGTNMMTLSKKR
SIO_010081: MAGTDC_RS01900
subclass of: SO_0000673
so part of: MAGTDC_RS01900
location: complement(17203..17586)
location: region:17203-17586:-1
so has part: feature:17203-17586:-1:exon

WP_146656829.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17203-17586:-1:exon

MAGTDC_RS01905
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01905
old locus tag: magtdc_85
so part of: sequence
location: complement(18918..21622)
location: region:18918-21622:-1
so has part: feature:18918-21622:-1:exon
subclass of: SO_0000573

79947775
type: Gene
SIO_000068: ncbigene

position:18918:-1
position: 18918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21622:-1
position: 21622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18918-21622:-1:exon

MAGTDC_RS01905
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS01905
old locus tag: magtdc_85
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS01905
subclass of: SO_0000673
so part of: MAGTDC_RS01905
location: complement(18918..21622)
location: region:18918-21622:-1
so has part: feature:18918-21622:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18918-21622:-1:exon

MAGTDC_RS01915
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01915
old locus tag: magtdc_84
so part of: sequence
location: complement(22205..23769)
location: region:22205-23769:-1
so has part: feature:22205-23769:-1:exon
subclass of: SO_0000573

79947776
type: Gene
SIO_000068: ncbigene

position:22205:-1
position: 22205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23769:-1
position: 23769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22205-23769:-1:exon

MAGTDC_RS01915
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS01915
old locus tag: magtdc_84
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS01915
subclass of: SO_0000673
so part of: MAGTDC_RS01915
location: complement(22205..23769)
location: region:22205-23769:-1
so has part: feature:22205-23769:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22205-23769:-1:exon

MAGTDC_RS01925
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01925
so part of: sequence
location: complement(24399..24698)
location: region:24399-24698:-1
so has part: feature:24399-24698:-1:exon
subclass of: SO_0000010

79947777
type: Gene
SIO_000068: ncbigene

position:24399:-1
position: 24399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24698:-1
position: 24698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24399-24698:-1:exon

MAGTDC_RS01925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MCLVSSRRDVITEIEMSIINRWYWVWVRSGREEVRVVVISGWDVVFDNKKKMLLIYWCCTWIMLGTCHYDWCVLWVYNKVVIGSMKWDRCVMFNGNICV
SIO_010081: MAGTDC_RS01925
subclass of: SO_0000673
so part of: MAGTDC_RS01925
location: complement(24399..24698)
location: region:24399-24698:-1
so has part: feature:24399-24698:-1:exon

WP_192573077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24399-24698:-1:exon

MAGTDC_RS01930
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01930
so part of: sequence
location: complement(24665..24862)
location: region:24665-24862:-1
so has part: feature:24665-24862:-1:exon
subclass of: SO_0000010

79947778
type: Gene
SIO_000068: ncbigene

position:24665:-1
position: 24665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24862:-1
position: 24862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24665-24862:-1:exon

MAGTDC_RS01930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01930
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLTFVICLIQHVRITVMFRCWFGRCLVKMLWFDGNLSMACFVMCLVCYLIIVVHECVWLVQGEML
SIO_010081: MAGTDC_RS01930
subclass of: SO_0000673
so part of: MAGTDC_RS01930
location: complement(24665..24862)
location: region:24665-24862:-1
so has part: feature:24665-24862:-1:exon

WP_146656833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24665-24862:-1:exon

MAGTDC_RS05505
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05505
so part of: sequence
location: complement(28751..28909)
location: region:28751-28909:-1
so has part: feature:28751-28909:-1:exon
subclass of: SO_0000010

79948370
type: Gene
SIO_000068: ncbigene

position:28751:-1
position: 28751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28909:-1
position: 28909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28751-28909:-1:exon

MAGTDC_RS05505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKNMVIKSNLFSYSHVIILMDGTFGICVVLVYRVDLDHTERIVHDIIYSIRY
SIO_010081: MAGTDC_RS05505
subclass of: SO_0000673
so part of: MAGTDC_RS05505
location: complement(28751..28909)
location: region:28751-28909:-1
so has part: feature:28751-28909:-1:exon

WP_278046923.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28751-28909:-1:exon