Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant7, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant7, whole genome shotgun sequence.
sequence version: NZ_CM008793.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008793.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008793.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 29603
topology: circular
so has quality: SO_0000988
location: 1..29603
location: region:1-29603:1
RO_0002162: 573658

NZ_CM008793
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29603:1
position: 29603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29603:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant7
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS01705
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01705
old locus tag: magtdc_60
so part of: sequence
location: 1381..2487
location: region:1381-2487:1
so has part: feature:1381-2487:1:exon
subclass of: SO_0000010

79947740
type: Gene
SIO_000068: ncbigene

position:1381:1
position: 1381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2487:1
position: 2487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1381-2487:1:exon

MAGTDC_RS01705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01705
old locus tag: magtdc_60
EC number: 2.6.1.9
inference: COORDINATES: protein motif:HMM:NF012382.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: histidinol-phosphate transaminase
translation: MTLNLITKYHSSSIGSKVLAIHKLSSNENPLGTSKLIRKRLQINHIKLERYSNNIYKKLIQNIAITYNLNKKQIVLGNGSDEFLSLLCFAYLKEGDEVIISEHGFLLYKTQVLAAHAIPVIIKDTNNKIDINNIIRSINTKTKMIFITMPTNPAGLFLTSREINQLSALLKPTNILLVLDMAYSEYVKDDRYSIKITTNIVIIKTLSKIYGLASLRLGWMYSRPDLIKSIEKIKSPFNVNRIAQIAGRVVLSDSKQRRLSRSFNVFWLIKLIIYLRKANFIIDRSYANFIVIKLDKKVPILLIENYIAKCNVNVRRMSEYKLFNSIRASVGLPHENVKLINQFKRLKKQKFILVTHKTEKCTTQYWKN
SIO_010081: MAGTDC_RS01705
subclass of: SO_0000673
so part of: MAGTDC_RS01705
location: 1381..2487
location: region:1381-2487:1
so has part: feature:1381-2487:1:exon

WP_146656791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1381-2487:1:exon

MAGTDC_RS01715
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01715
so part of: sequence
location: 8987..9169
location: region:8987-9169:1
so has part: feature:8987-9169:1:exon
subclass of: SO_0000010

79947741
type: Gene
SIO_000068: ncbigene

position:8987:1
position: 8987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9169:1
position: 9169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8987-9169:1:exon

MAGTDC_RS01715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01715
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDVKDLNINSVLNIIVRNKKEVLTDVIERCNLSRPKYINRLYLQFMDFGNKDLEVGPWQD
SIO_010081: MAGTDC_RS01715
subclass of: SO_0000673
so part of: MAGTDC_RS01715
location: 8987..9169
location: region:8987-9169:1
so has part: feature:8987-9169:1:exon

WP_146656793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8987-9169:1:exon

MAGTDC_RS05490
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05490
so part of: sequence
location: 10689..10811
location: region:10689-10811:1
so has part: feature:10689-10811:1:exon
subclass of: SO_0000010

79948367
type: Gene
SIO_000068: ncbigene

position:10689:1
position: 10689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10811:1
position: 10811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10689-10811:1:exon

MAGTDC_RS05490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVTNVKIDITIRLIRTYRNVIDKPTLKPTKKRVYIIIIHW
SIO_010081: MAGTDC_RS05490
subclass of: SO_0000673
so part of: MAGTDC_RS05490
location: 10689..10811
location: region:10689-10811:1
so has part: feature:10689-10811:1:exon

WP_278046918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10689-10811:1:exon

MAGTDC_RS01720
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01720
so part of: sequence
location: 11644..11871
location: region:11644-11871:1
so has part: feature:11644-11871:1:exon
subclass of: SO_0000010

79947742
type: Gene
SIO_000068: ncbigene

position:11644:1
position: 11644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11871:1
position: 11871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11644-11871:1:exon

MAGTDC_RS01720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVKSFNLEGSKVGLELRSFNKDKQHRCYTSKYDIEKVETPLQMFFINISYLNISTELDIYISNLNKDDNKKDEST
SIO_010081: MAGTDC_RS01720
subclass of: SO_0000673
so part of: MAGTDC_RS01720
location: 11644..11871
location: region:11644-11871:1
so has part: feature:11644-11871:1:exon

WP_146656794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11644-11871:1:exon

MAGTDC_RS01725
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsN
locus tag: MAGTDC_RS01725
old locus tag: magtdc_62
so part of: sequence
location: 13596..13901
location: region:13596-13901:1
so has part: feature:13596-13901:1:exon
subclass of: SO_0000010

79947743
type: Gene
SIO_000068: ncbigene

position:13596:1
position: 13596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13901:1
position: 13901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13596-13901:1:exon

MAGTDC_RS01725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsN
locus tag: MAGTDC_RS01725
old locus tag: magtdc_62
inference: COORDINATES: protein motif:HMM:NF006477.0
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S14
translation: MSRFGAINKCKKTNDMIQKYKLIRLDLKRTLNSPLTSTKQKLLTTRSLINLPRTASLVRIRNRCVISGRPRGYYRFFGISRIIIKQLANTGLLPGMIKSSW
SIO_010081: MAGTDC_RS01725
subclass of: SO_0000673
so part of: MAGTDC_RS01725
location: 13596..13901
location: region:13596-13901:1
so has part: feature:13596-13901:1:exon

WP_146656795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13596-13901:1:exon

MAGTDC_RS01730
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsH
locus tag: MAGTDC_RS01730
old locus tag: magtdc_63
so part of: sequence
location: 13895..14278
location: region:13895-14278:1
so has part: feature:13895-14278:1:exon
subclass of: SO_0000010

79947744
type: Gene
SIO_000068: ncbigene

position:13895:1
position: 13895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14278:1
position: 14278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13895-14278:1:exon

MAGTDC_RS01730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsH
locus tag: MAGTDC_RS01730
old locus tag: magtdc_63
inference: COORDINATES: protein motif:HMM:NF012627.2
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S8
translation: MIDSIANMLAHVKNCSRTRKVLIYIPYSKFKFNLSLAFERYRFVKRVSLLRYSINRSEILIELAYNGYHNMIQDIVQVSKPGQRIYWNKKQLRVKRQIGIYFLSTSSGIKTNLDPTCVGGEVICNLV
SIO_010081: MAGTDC_RS01730
subclass of: SO_0000673
so part of: MAGTDC_RS01730
location: 13895..14278
location: region:13895-14278:1
so has part: feature:13895-14278:1:exon

WP_278046919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13895-14278:1:exon

MAGTDC_RS01735
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01735
old locus tag: magtdc_64
so part of: sequence
location: 14244..14762
location: region:14244-14762:1
so has part: feature:14244-14762:1:exon
subclass of: SO_0000010

79947745
type: Gene
SIO_000068: ncbigene

position:14244:1
position: 14244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14762:1
position: 14762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14244-14762:1:exon

MAGTDC_RS01735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01735
old locus tag: magtdc_64
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLEVKWSVILSKKLLLYAIPKDIKIYLYGSNVQMFGAIGNNNLNKHVFIKHNCIVVCSHNLKFQLSKLTNNIKGIKHSHIRWMIMRGIGYKISKRLDKLEIELGFSHTILFRLEEPTVNLMVNCNKLKIWGCSLNKVTLVAKKLKMLRKTNVYNGTGIVYRDQRFELKVGKR
SIO_010081: MAGTDC_RS01735
subclass of: SO_0000673
so part of: MAGTDC_RS01735
location: 14244..14762
location: region:14244-14762:1
so has part: feature:14244-14762:1:exon

WP_192573070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14244-14762:1:exon

MAGTDC_RS01740
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01740
so part of: sequence
location: 14749..14985
location: region:14749-14985:1
so has part: feature:14749-14985:1:exon
subclass of: SO_0000010

79947746
type: Gene
SIO_000068: ncbigene

position:14749:1
position: 14749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14985:1
position: 14985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14749-14985:1:exon

MAGTDC_RS01740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01740
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MERGNRTELNISKHNDTIHVMIINDGIYNMVNGTNGNLIIKITRCCLATGIFYLRFTNRYKGRIVQVVNMLRTLGFIL
SIO_010081: MAGTDC_RS01740
subclass of: SO_0000673
so part of: MAGTDC_RS01740
location: 14749..14985
location: region:14749-14985:1
so has part: feature:14749-14985:1:exon

WP_146656798.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14749-14985:1:exon

MAGTDC_RS01745
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01745
old locus tag: magtdc_65
so part of: sequence
location: 14986..15555
location: region:14986-15555:1
so has part: feature:14986-15555:1:exon
subclass of: SO_0000010

79947747
type: Gene
SIO_000068: ncbigene

position:14986:1
position: 14986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15555:1
position: 15555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14986-15555:1:exon

MAGTDC_RS01745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01745
old locus tag: magtdc_65
inference: COORDINATES: protein motif:HMM:NF012553.2
note: located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S5
translation: MKIYWKKFDDEYVPNFIDKKTRKNIADDIEISNLFDGNTLLYEKIIKLTKVCRIVKGGRKYRYWALVVVGDMCGSVGFGMAKANEAQDAVIKSGRCAKNNMLKVPLGRNKELISNISGRYNSTKVLMWNNRNGIGIRASNAIRSIFDALGIKNVSAKIIGSRNPHNVIKATFTALKELNLRFRLWNVVN
SIO_010081: MAGTDC_RS01745
subclass of: SO_0000673
so part of: MAGTDC_RS01745
location: 14986..15555
location: region:14986-15555:1
so has part: feature:14986-15555:1:exon

WP_146656799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14986-15555:1:exon

MAGTDC_RS01750
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsM
locus tag: MAGTDC_RS01750
old locus tag: magtdc_66
so part of: sequence
location: 16017..16361
location: region:16017-16361:1
so has part: feature:16017-16361:1:exon
subclass of: SO_0000010

79947748
type: Gene
SIO_000068: ncbigene

position:16017:1
position: 16017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16361:1
position: 16361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16017-16361:1:exon

MAGTDC_RS01750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsM
locus tag: MAGTDC_RS01750
old locus tag: magtdc_66
inference: COORDINATES: protein motif:HMM:NF012633.2
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S13
translation: MLIYGIRIPENRNIFVALQTLYGIGEPLSCLILSLLSINPRILVRTLSTFQRYKLIHFIETNLTLENILRYKVLSDVSNLKHINCYRGLRHKVGLPVRGQRTRTNAHTRKYTRL
SIO_010081: MAGTDC_RS01750
subclass of: SO_0000673
so part of: MAGTDC_RS01750
location: 16017..16361
location: region:16017-16361:1
so has part: feature:16017-16361:1:exon

WP_146656800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16017-16361:1:exon

MAGTDC_RS01755
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsK
locus tag: MAGTDC_RS01755
old locus tag: magtdc_67
so part of: sequence
location: 16372..16728
location: region:16372-16728:1
so has part: feature:16372-16728:1:exon
subclass of: SO_0000010

79947749
type: Gene
SIO_000068: ncbigene

position:16372:1
position: 16372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16728:1
position: 16728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16372-16728:1:exon

MAGTDC_RS01755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsK
locus tag: MAGTDC_RS01755
old locus tag: magtdc_67
inference: COORDINATES: protein motif:HMM:NF003698.1
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S11
translation: MFDKGLNGVLHIQLTDNNVIICCSDWKGNVILWSSAGERGFKGKKKSSPFAIQMTMETILKKLITMNIKNIQVEIKGIESNRDVVLRVLQSSILNITSIRDVATKSHNGCKPPKVRRV
SIO_010081: MAGTDC_RS01755
subclass of: SO_0000673
so part of: MAGTDC_RS01755
location: 16372..16728
location: region:16372-16728:1
so has part: feature:16372-16728:1:exon

WP_146656801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16372-16728:1:exon

MAGTDC_RS04585
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04585
so part of: sequence
location: 17261..17437
location: region:17261-17437:1
so has part: feature:17261-17437:1:exon
subclass of: SO_0000010

79948201
type: Gene
SIO_000068: ncbigene

position:17261:1
position: 17261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17437:1
position: 17437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17261-17437:1:exon

MAGTDC_RS04585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04585
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MCLHEKEMNHAIEINGSVSNIEGMFGCCLSQRWKFIIELKVIIKLFRINGEIIKTMKL
SIO_010081: MAGTDC_RS04585
subclass of: SO_0000673
so part of: MAGTDC_RS04585
location: 17261..17437
location: region:17261-17437:1
so has part: feature:17261-17437:1:exon

WP_192573066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17261-17437:1:exon

MAGTDC_RS05495
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05495
so part of: sequence
location: complement(18377..18511)
location: region:18377-18511:-1
so has part: feature:18377-18511:-1:exon
subclass of: SO_0000010

79948368
type: Gene
SIO_000068: ncbigene

position:18377:-1
position: 18377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18511:-1
position: 18511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18377-18511:-1:exon

MAGTDC_RS05495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05495
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIRTWKRPMTIYSMWISDCIKTMTNYGCLFATGRWWSDLILGTA
SIO_010081: MAGTDC_RS05495
subclass of: SO_0000673
so part of: MAGTDC_RS05495
location: complement(18377..18511)
location: region:18377-18511:-1
so has part: feature:18377-18511:-1:exon

WP_278046917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18377-18511:-1:exon

MAGTDC_RS01760
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: hisD
locus tag: MAGTDC_RS01760
old locus tag: magtdc_68
so part of: sequence
location: 18640..19938
location: region:18640-19938:1
so has part: feature:18640-19938:1:exon
subclass of: SO_0000010

79947750
type: Gene
SIO_000068: ncbigene

position:18640:1
position: 18640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19938:1
position: 19938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18640-19938:1:exon

MAGTDC_RS01760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: hisD
locus tag: MAGTDC_RS01760
old locus tag: magtdc_68
EC number: 1.1.1.23
inference: COORDINATES: protein motif:HMM:NF013013.2
GO function: GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: histidinol dehydrogenase
translation: MCLRLRSDSPLFDKFIDGIIADRTLNNEHVDKLIDRMEELILKYSDKALMAYNKRLDNVTSRLLRIKVEHDVRGVDLRVLFEIKTLYDRILRYHSSQLIRDVFYVDKEGVILGSVWKPLSSIGIYVPGGETTYISSMFMSAIPARLAGIKHIYVATPYHKIKDKRLFMACASICGVECIYTFGGPQAIIALAVGTETVKKVDKITGPGNIYVTTAKKKMFGRVGIDGLAGPSESVIIADKSSDTQQVSVDLAAQLEHDKSALAVLITKTPKKASAVRSNINALMNLVPSDSNIKHSWSNYGLTIVCKSSTSLYNIVKKISPEHLHLNTSNAFEMMKWIHSAGSIFIGKHSPIAVGDYAAGCNHILPTNTTSRFSSGLSVLDFMTRKSVTCLPTLGSLRSISTPCIELALMEKMDLHALSIGCRLHAVNNVDR
SIO_010081: MAGTDC_RS01760
subclass of: SO_0000673
so part of: MAGTDC_RS01760
location: 18640..19938
location: region:18640-19938:1
so has part: feature:18640-19938:1:exon

WP_146656802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18640-19938:1:exon

MAGTDC_RS01765
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01765
old locus tag: magtdc_69
so part of: sequence
location: 20526..20855
location: region:20526-20855:1
so has part: feature:20526-20855:1:exon
subclass of: SO_0000010

79947751
type: Gene
SIO_000068: ncbigene

position:20526:1
position: 20526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20855:1
position: 20855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20526-20855:1:exon

MAGTDC_RS01765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01765
old locus tag: magtdc_69
inference: COORDINATES: protein motif:HMM:NF012752.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: bL12 family ribosomal protein
translation: MIIGLRVTELMELIKLLELTWNTDTKVQTDQNHHVDLVNNKRYNVRLISIGKNKINVIKEIKNLLNIGLKESKDFIEVLPKMIKEQIERHEADTIKKKFELLDATIEIL
SIO_010081: MAGTDC_RS01765
subclass of: SO_0000673
so part of: MAGTDC_RS01765
location: 20526..20855
location: region:20526-20855:1
so has part: feature:20526-20855:1:exon

WP_192573067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20526-20855:1:exon

MAGTDC_RS01770
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01770
old locus tag: magtdc_70
so part of: sequence
location: 20858..24619
location: region:20858-24619:1
so has part: feature:20858-24619:1:exon
subclass of: SO_0000010

79947752
type: Gene
SIO_000068: ncbigene

position:20858:1
position: 20858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24619:1
position: 24619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20858-24619:1:exon

MAGTDC_RS01770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01770
old locus tag: magtdc_70
inference: COORDINATES: protein motif:HMM:NF012771.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNTRFDFNNDLVDKIPLNHSGLQNRLYKNTLWGCYNNEGIKISKLELNLRTLFPFDFGHWNLELIRSNNFIKDKKLTSFELYLNVVQYCLDKDIMFICCQFDLDVPLMDLPRLQKDEALTVNGTTKTLIMQLIKQSAVLFDQESESINMKDKHFGYLRIDGSKIEHNNHESDLLTSLLKLKTKRSHIFKGTSGKRDVGFYKGKWCQLTWINPQQSRFKYNSRWSFRCKKKLEHCLEISNGIVTSTYIDRSKVPFVNIGERIILDKHTALNYLNPIAITKSTKVLNVINYLDKAMLEGESEITYEEINNVELTFPGRIFLNELTRNHSNFGLDLLTKKDLILIWNEISVNLGGFNNTNCDVQIVRSGGDVIIDVIKKTLVHVLDIKNPNVQTDEVMMIDTLLDSVKKIQSDVDKFFVSSSLCQYLDQVNSLSELSHRNKLTYMGEGGLKQQNVDVTIRDTKRWHLAKICPIESPEGQNVGLVSALSAYVNVDVNGYMSTGYYKIYNGLINSNVIYLNYFESMRLNVALPCNKDQRKWVMCLNRNRIKVTDRNVIDLNLVSNVQVFSHAVRLIPFLGHNDPTRALMAVNMLKQAIPPLNPRPPLVGTGEEYNVMRDTGHNVVACNNGTVISADSKTIVVYEPRDQKRRVYILPQVVKSNQEMCQRIRTVVNPGQTLKRGDVIAECQSSCDGEMSLGANLLVAFMCWEGYNFEDSVIISDNVINKGVFKSFHITDLETKVMKTTSGNEWLTPNINGIPMKYRRHLDHNGIVKVGSNVRKDDVLVGKLAPRPDAERKKKEFKEICGDELSSDEEHGNDNGTIINITDENYEVGKEQEGDDEFSIDLTYNTSFRVPNGIEYATVLEVNRSSDEDRSYYDIDLEEYIRCYNVVKRKYIRRCCTLLHINNTEVPFTTSSFSSDNKIIQDGLNLLHKKYLSYLNKLEADMLSKFNNRLTNENQDDEGTVLEVIRIKLLVHKSIKTGDKICGRHGNKGVISRIVPKEDMPFMADGTPIDIILNPLGVPSRMNIGQLLETTFGLISYKFGLEFKNVLNMYYKTNDDRILKTVVPKLTELYPNINKLSKDMILILLSELSQGVKISCPLFKFPFESCLEDFNKRLSINFNGKVQLYDGITGLPFDKTTAIGIIYIFKLNHLVDDKIHARSTGPYSIVIQQPLKGRDNLGGQRLGEMEVWALQSYGAAYFLNEALSAKCDDIVARREVQDNILKGKPKYNLYQIESMSVLIKELFSMCIEIETTK
SIO_010081: MAGTDC_RS01770
subclass of: SO_0000673
so part of: MAGTDC_RS01770
location: 20858..24619
location: region:20858-24619:1
so has part: feature:20858-24619:1:exon

WP_146656804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20858-24619:1:exon

MAGTDC_RS01775
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01775
old locus tag: magtdc_71
so part of: sequence
location: 24625..28650
location: region:24625-28650:1
so has part: feature:24625-28650:1:exon
subclass of: SO_0000010

79947753
type: Gene
SIO_000068: ncbigene

position:24625:1
position: 24625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28650:1
position: 28650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24625-28650:1:exon

MAGTDC_RS01775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01775
old locus tag: magtdc_71
inference: COORDINATES: protein motif:HMM:NF016859.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLSIFNKNITSLRFKIISPETILSWSYGEVCNADTYDDNGKPIIDGLFCPKIFGPGKKNECLCSISNLNNEMICQTCGIYLGSDRMKTRLRFGHINLSTPVIHTLFHKPTPNILSELLNMDVGIVQDIIDCKLHVITWSNLNNYRNGQVISTETYRNMWEQKKQCIVASGGQAIMELLSKVQLTKIKTSLIKEIEQTKSDDHLHKIRTKLEMVEGFISNNFKLERLVIRMLPVLPAELRPVMVLDDDTTASSDLNILYKHIITANNNKLIKTNETRSNNVDKFDSYIKALILLQKTVDDLIDNSSNVDNPNNYNTTSLKSLAEMLKGKQGRFRHNILGKRVDYSGRSVIVPEPSLSINECSIPRSMAVELFKPFIHSKLMLKSEFNTKTTIKHILENDIHLTYKILEEVVSYCPVLLNRAPTLHKLSMRAFWVKLTNEKVIRLHPLVCSGFNADFDGDQMAVHVPLSFNARIEATTLLMADNNVMYPAHGDPCILPSQDMILGLYYMSLTSPEYKDICLSSYNEVHRLLFLKKINLHTKIKFRTVVNGKITEILSTSGRLLISELVPSECNFLYEWNYPELSKQLTSDIIKLVYNKYGSKQMTTFCEKLMRLGLKYATQSGMSLSASDLSNLSYKKILLKDIRSIITTSWSKIGNKHEIPMPLSIWPKVLDAINNNINLEVTGYSSKQTSIQMIVNSGARGTLSQVQQLIGSKGYIVGFEGKPCRLPILNSYNEGLSLIQYFCCTCSSRRGLIDTALKTASSGYLTRKLVESTREWIVSEDDCKTETGLQIKPIIDLEFIKNRLIGRFLAKPILKNKKITVKKNELITEDNICNILMNYNNDLWIRSPLTCQARFGICKLCYGIELSCGNVVQQGESVGVIAAQSISEPGTQLTLRTFHGLSNVGDKTHEKLIKNCLMSPFSGIIKIKNISCVISESNDIIVVNSNCILSIMKDDIEIWSYKLPRGTHLLVLNNKHVESEEILCFNCIRSTSLLSLTNGRSFFKNLVYHLNIKKEPTNIIKKIVTNVKPSVVMGKLSLIGLNVGRMKRLYYVTVGNRNKFIITPNELIRSFDSISENIVEDEDVIDMTLTEDFERLSKLFDNNVDENNSSIISPIDGLLKHGVSGNGNRSFVIDPIKTNEKPIVYSDLDVKLLIEDNKMIKRGQIILHGDHDLSNYAEVYGFNDLFNYFINIVQEIYGNQGVNVNSKHIEMVLRQMTNVVSITDPGSSSLMVGCCYRWQNISLINNHINKLKRKMASGIRQIVGITDSCLNQGSILSAISFQGAMKTVIKAIISGNNYGISGIKDKIMLGKIPLVGTGFVSKRRLIESKMLNESDPVNEKI
SIO_010081: MAGTDC_RS01775
subclass of: SO_0000673
so part of: MAGTDC_RS01775
location: 24625..28650
location: region:24625-28650:1
so has part: feature:24625-28650:1:exon

WP_192573068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24625-28650:1:exon

MAGTDC_RS01780
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01780
so part of: sequence
location: 29129..29419
location: region:29129-29419:1
so has part: feature:29129-29419:1:exon
subclass of: SO_0000010

79947754
type: Gene
SIO_000068: ncbigene

position:29129:1
position: 29129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29419:1
position: 29419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29129-29419:1:exon

MAGTDC_RS01780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01780
inference: COORDINATES: protein motif:HMM:NF012404.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNNRLHMNPLKVLYKTIDNVIPYIEVRNMRVDGVSHLMPTDIPTDRRLGLGLRWLVDATKQHREVTAWLRLAWEIIDSVLRKSSSYKRWETIHNLA
SIO_010081: MAGTDC_RS01780
subclass of: SO_0000673
so part of: MAGTDC_RS01780
location: 29129..29419
location: region:29129-29419:1
so has part: feature:29129-29419:1:exon

WP_278046920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29129-29419:1:exon