Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant5, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant5, whole genome shotgun sequence.
sequence version: NZ_CM008791.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008791.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008791.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 34671
topology: circular
so has quality: SO_0000988
location: 1..34671
location: region:1-34671:1
RO_0002162: 573658

NZ_CM008791
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34671:1
position: 34671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34671:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant5
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS05440
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05440
so part of: sequence
location: join(34613..34671,1..67)
location: region:1-34671:1
so has part: feature:34613-34671:1:exon
so has part: feature:1-67:1:exon
subclass of: SO_0000010

79948357
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:34613-34671:1:exon

position:34613:1
position: 34613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-67:1:exon

position:67:1
position: 67
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MAGTDC_RS05440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05440
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFTTGKRLSFVILACDGLGVWMLLFIVSIIRKCLVNIIYLN
SIO_010081: MAGTDC_RS05440
subclass of: SO_0000673
so part of: MAGTDC_RS05440
location: join(34613..34671,1..67)
location: region:1-34671:1
so has part: feature:34613-34671:1:exon
so has part: feature:1-67:1:exon

WP_278046909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34613-34671:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-67:1:exon

MAGTDC_RS05445
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05445
so part of: sequence
location: 770..892
location: region:770-892:1
so has part: feature:770-892:1:exon
subclass of: SO_0000010

79948358
type: Gene
SIO_000068: ncbigene

position:770:1
position: 770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:892:1
position: 892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:770-892:1:exon

MAGTDC_RS05445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05445
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDQKMMVWISYRYMINGIKRLWAADVTAVNLGIVNIVLSK
SIO_010081: MAGTDC_RS05445
subclass of: SO_0000673
so part of: MAGTDC_RS05445
location: 770..892
location: region:770-892:1
so has part: feature:770-892:1:exon

WP_278046910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:770-892:1:exon

MAGTDC_RS05450
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05450
so part of: sequence
location: complement(1207..1338)
location: region:1207-1338:-1
so has part: feature:1207-1338:-1:exon
subclass of: SO_0000010

79948359
type: Gene
SIO_000068: ncbigene

position:1207:-1
position: 1207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1338:-1
position: 1338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1207-1338:-1:exon

MAGTDC_RS05450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MELNDGNNKMMERSVKIESMNRSEMMMVTDEHSGSNFISTLTK
SIO_010081: MAGTDC_RS05450
subclass of: SO_0000673
so part of: MAGTDC_RS05450
location: complement(1207..1338)
location: region:1207-1338:-1
so has part: feature:1207-1338:-1:exon

WP_278046911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1207-1338:-1:exon

MAGTDC_RS01485
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01485
so part of: sequence
location: complement(1352..1540)
location: region:1352-1540:-1
so has part: feature:1352-1540:-1:exon
subclass of: SO_0000010

79947701
type: Gene
SIO_000068: ncbigene

position:1352:-1
position: 1352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1540:-1
position: 1540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1352-1540:-1:exon

MAGTDC_RS01485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01485
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVQSGTRRFTTLVLKDVKISVLDTVYSFIYSFTDRRWLDEYTSRFSNGVNLMSDTTLIKLMK
SIO_010081: MAGTDC_RS01485
subclass of: SO_0000673
so part of: MAGTDC_RS01485
location: complement(1352..1540)
location: region:1352-1540:-1
so has part: feature:1352-1540:-1:exon

WP_146656750.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1352-1540:-1:exon

MAGTDC_RS01490
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01490
old locus tag: magtdc_39
so part of: sequence
location: complement(1498..2058)
location: region:1498-2058:-1
so has part: feature:1498-2058:-1:exon
subclass of: SO_0000010

79947702
type: Gene
SIO_000068: ncbigene

position:1498:-1
position: 1498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2058:-1
position: 2058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1498-2058:-1:exon

MAGTDC_RS01490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01490
old locus tag: magtdc_39
inference: COORDINATES: protein motif:HMM:NF012881.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFTGLVKTLGMIVDVLPLSGGIKLCIISKLRLNVGNSISCSGVCLTVVSVNEYYFEVEVWSESLCLSGLVDLQRFDMVNLEEPITLNTPLHGNITNGYSKSVVTIDKTYVYGDSIILVIECPKWISDEITSPSSISLDGVALTVTRSGEDYFEVLLTRYTILNTTFKYFDTKRWFSLEQDVSQRWC
SIO_010081: MAGTDC_RS01490
subclass of: SO_0000673
so part of: MAGTDC_RS01490
location: complement(1498..2058)
location: region:1498-2058:-1
so has part: feature:1498-2058:-1:exon

WP_146656751.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1498-2058:-1:exon

MAGTDC_RS01500
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01500
old locus tag: magtdc_40
so part of: sequence
location: complement(2294..3583)
location: region:2294-3583:-1
so has part: feature:2294-3583:-1:exon
subclass of: SO_0000010

79947703
type: Gene
SIO_000068: ncbigene

position:2294:-1
position: 2294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3583:-1
position: 3583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2294-3583:-1:exon

MAGTDC_RS01500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01500
old locus tag: magtdc_40
EC number: 2.1.2.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020184567.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: serine hydroxymethyltransferase
translation: MNVVTVNPLFKTSLSTLDVLVESILKNELIRQTTSLNLIASENLVSKAVLEAQNNVFINKYAEGYPGSRYYGGCMFADELEKVAIDRAKRLFKCEYANVQPHSGSQMNQAVMLALLSPGDTIMGMDLKCGGHLTHGSTVNISGMWFKSVSYGVDLKTGTIDMNEVLNVAIRHRPKLIIAGTTSYPRTIDWKAFRRVADIVDSFLLADISHVAGLIATGLQPSPIDHCDVVTTTTHKSLRGPRGGLILSNKRELFNRLSNAVFPGLQGGPMMNIIAAKAVAFLEAQQDEYRIWTKSVVENAKAMVERFKHKKIDIVSNGTDNHLVMIDLKNLGITGKQVTSWLDRCYITANKNTIPNDLLSANTTSGLRLGTCACTSRGLKKEDFERVADMIADVLLEIKNKGEVSLPLETRTRMEVLDLADKYPICYNV
SIO_010081: MAGTDC_RS01500
subclass of: SO_0000673
so part of: MAGTDC_RS01500
location: complement(2294..3583)
location: region:2294-3583:-1
so has part: feature:2294-3583:-1:exon

WP_146656753.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2294-3583:-1:exon

MAGTDC_RS01505
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsL
locus tag: MAGTDC_RS01505
old locus tag: magtdc_41
so part of: sequence
location: complement(3864..4247)
location: region:3864-4247:-1
so has part: feature:3864-4247:-1:exon
subclass of: SO_0000010

79947704
type: Gene
SIO_000068: ncbigene

position:3864:-1
position: 3864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4247:-1
position: 4247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3864-4247:-1:exon

MAGTDC_RS01505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsL
locus tag: MAGTDC_RS01505
old locus tag: magtdc_41
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005853956.1
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S12
translation: MTINQLIKGRRRKNTKKSNTPALNGAPFRSGICIRVYVTTPKKPNSALRKVAKVKLCNGKEIIAYIPGEGHNLQEHSAVIVRGGRVKDLPGVRYHLVRGLLDLKCVEGRKNSRSKYGTKMMTLSKKQ
SIO_010081: MAGTDC_RS01505
subclass of: SO_0000673
so part of: MAGTDC_RS01505
location: complement(3864..4247)
location: region:3864-4247:-1
so has part: feature:3864-4247:-1:exon

WP_146656754.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3864-4247:-1:exon

MAGTDC_RS01510
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01510
old locus tag: magtdc_42
so part of: sequence
location: complement(5578..8287)
location: region:5578-8287:-1
so has part: feature:5578-8287:-1:exon
subclass of: SO_0000573

79947705
type: Gene
SIO_000068: ncbigene

position:5578:-1
position: 5578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8287:-1
position: 8287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5578-8287:-1:exon

MAGTDC_RS01510
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS01510
old locus tag: magtdc_42
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS01510
subclass of: SO_0000673
so part of: MAGTDC_RS01510
location: complement(5578..8287)
location: region:5578-8287:-1
so has part: feature:5578-8287:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5578-8287:-1:exon

MAGTDC_RS01515
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01515
old locus tag: magtdc_43
so part of: sequence
location: complement(8857..10428)
location: region:8857-10428:-1
so has part: feature:8857-10428:-1:exon
subclass of: SO_0000573

79947706
type: Gene
SIO_000068: ncbigene

position:8857:-1
position: 8857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10428:-1
position: 10428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8857-10428:-1:exon

MAGTDC_RS01515
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS01515
old locus tag: magtdc_43
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS01515
subclass of: SO_0000673
so part of: MAGTDC_RS01515
location: complement(8857..10428)
location: region:8857-10428:-1
so has part: feature:8857-10428:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8857-10428:-1:exon

MAGTDC_RS01520
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01520
so part of: sequence
location: complement(11199..11483)
location: region:11199-11483:-1
so has part: feature:11199-11483:-1:exon
subclass of: SO_0000010

79947707
type: Gene
SIO_000068: ncbigene

position:11199:-1
position: 11199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11483:-1
position: 11483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11199-11483:-1:exon

MAGTDC_RS01520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01520
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFVCLLAFDCDNENRLIGLVSIEMLWFGEGSSMGWLDNVGMLSDNSSIRYVWFNYKWKGNNRHRTSLLTDVMRLCTRWEEGVVVSYWRSGCCVW
SIO_010081: MAGTDC_RS01520
subclass of: SO_0000673
so part of: MAGTDC_RS01520
location: complement(11199..11483)
location: region:11199-11483:-1
so has part: feature:11199-11483:-1:exon

WP_192573047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11199-11483:-1:exon

MAGTDC_RS01525
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01525
old locus tag: magtdc_44
so part of: sequence
location: complement(15335..16630)
location: region:15335-16630:-1
so has part: feature:15335-16630:-1:exon
subclass of: SO_0000010

79947708
type: Gene
SIO_000068: ncbigene

position:15335:-1
position: 15335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16630:-1
position: 16630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15335-16630:-1:exon

MAGTDC_RS01525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01525
old locus tag: magtdc_44
inference: COORDINATES: protein motif:HMM:NF013584.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: amidase family protein
translation: MKLTRSLSKLYRYSRLPYTASISVLVKDQISIKNMKYELISLNLCNYSCKYNSEVILRIFNSKSIISGKTNMDEFGIGFSSGNSIRAITFTSWSIYSLKLLKLLTLSGGSSGNCAAALSLITTLLAIGSDTGGSIRQPANYNGLIGLKPTYGRCSRWGLVAYSPSLEQIGIMSRTTSDCSYLSSILFGKDNKDWNTFNIPVPKYQLYNNCHENELMILRKHSPCLNTDWTYGLSLINRIGINITEGKLSNIAVILPAYCVLTSVECFSSLSRYNGIRYGLRFKENNPFLLYKKIRSVGYNPDIRRKLMTGIYILSSKLNNFKLYSKALKYRFITKSNLITLIKNKIGLITPVIPHVNLGINYIRTNTFNHDIYTILSNITGLPSITIPLGINKNSIPFGVQVIGNPFDEVNLLSLCKHIQEVNGLIIPFDW
SIO_010081: MAGTDC_RS01525
subclass of: SO_0000673
so part of: MAGTDC_RS01525
location: complement(15335..16630)
location: region:15335-16630:-1
so has part: feature:15335-16630:-1:exon

WP_192573048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15335-16630:-1:exon

MAGTDC_RS01530
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01530
so part of: sequence
location: complement(16886..17134)
location: region:16886-17134:-1
so has part: feature:16886-17134:-1:exon
subclass of: SO_0000010

79947709
type: Gene
SIO_000068: ncbigene

position:16886:-1
position: 16886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17134:-1
position: 17134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16886-17134:-1:exon

MAGTDC_RS01530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01530
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MEAVNNVALMCWDHFKVTINWLDLRWDGTFCTSIEIKRWINVVLVRMEIGSMLQRLNGCGCKRTDSLPSNVLIDVITPKSLI
SIO_010081: MAGTDC_RS01530
subclass of: SO_0000673
so part of: MAGTDC_RS01530
location: complement(16886..17134)
location: region:16886-17134:-1
so has part: feature:16886-17134:-1:exon

WP_146656757.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16886-17134:-1:exon

MAGTDC_RS01535
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01535
so part of: sequence
location: 17276..17575
location: region:17276-17575:1
so has part: feature:17276-17575:1:exon
subclass of: SO_0000010

79947710
type: Gene
SIO_000068: ncbigene

position:17276:1
position: 17276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17575:1
position: 17575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17276-17575:1:exon

MAGTDC_RS01535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01535
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKVISSWMLVQTFGSDIRPTTRCQNGLLLNQLTNHRQLDPINQCLNTSFNIDSIVVNYKSIVSTQHDDNNMFGTTCCFKLVYSDLISSSCTLYYWPWWK
SIO_010081: MAGTDC_RS01535
subclass of: SO_0000673
so part of: MAGTDC_RS01535
location: 17276..17575
location: region:17276-17575:1
so has part: feature:17276-17575:1:exon

WP_146656758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17276-17575:1:exon

MAGTDC_RS01540
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01540
old locus tag: magtdc_45
so part of: sequence
location: complement(18449..18523)
location: region:18449-18523:-1
so has part: feature:18449-18523:-1:exon
subclass of: SO_0000663

79947711
type: Gene
SIO_000068: ncbigene

position:18449:-1
position: 18449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18523:-1
position: 18523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18449-18523:-1:exon

MAGTDC_RS01540
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 573658
locus tag: MAGTDC_RS01540
old locus tag: magtdc_45
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(18486..18488),aa:Gly,seq:gcc)
SIO_010081: MAGTDC_RS01540
subclass of: SO_0000673
so part of: MAGTDC_RS01540
location: complement(18449..18523)
location: region:18449-18523:-1
so has part: feature:18449-18523:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18449-18523:-1:exon

MAGTDC_RS01545
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01545
old locus tag: magtdc_46
so part of: sequence
location: complement(19087..20106)
location: region:19087-20106:-1
so has part: feature:19087-20106:-1:exon
subclass of: SO_0000010

79947712
type: Gene
SIO_000068: ncbigene

position:19087:-1
position: 19087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20106:-1
position: 20106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19087-20106:-1:exon

MAGTDC_RS01545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01545
old locus tag: magtdc_46
inference: COORDINATES: protein motif:HMM:NF012968.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: electron transfer flavoprotein subunit alpha/FixB family protein
translation: MKALVILEAVNNRFSSTDQRLIDFATRMCPNVDVLAINCNVVRIMVLKRINNVFIFACKRPINVLRDYHRLSLIVSGLLLKYDIVLVDNNSNLHHILCCAGAAINRCVISGIHDVIDYNVFAMLLHDGKLLKYISFKHPSPWLMSVRLFYPTLLFESKKPDRQPSLTSRIQIINFNTDHCLKLLTYSRKDLGPYGLDLPKLTEADIVIAGGRSFGTSENFKKWLLPLALKLGAAIGTTRGAVELGCAPSELQIGGNYQVISPKLYIAFGISGSDHHLAGIRFVKSIVAVNTDINAQIFSLSNYAIASDMYKVITKMMDWLQKNTVKNTDFLINKFRNTV
SIO_010081: MAGTDC_RS01545
subclass of: SO_0000673
so part of: MAGTDC_RS01545
location: complement(19087..20106)
location: region:19087-20106:-1
so has part: feature:19087-20106:-1:exon

WP_146656759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19087-20106:-1:exon

MAGTDC_RS01550
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01550
old locus tag: magtdc_47
so part of: sequence
location: complement(20111..20851)
location: region:20111-20851:-1
so has part: feature:20111-20851:-1:exon
subclass of: SO_0000010

79947713
type: Gene
SIO_000068: ncbigene

position:20111:-1
position: 20111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20851:-1
position: 20851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20111-20851:-1:exon

MAGTDC_RS01550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01550
old locus tag: magtdc_47
inference: COORDINATES: protein motif:HMM:NF013200.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRILVTVKIIYDPKIELRQQDGMLCFENISRVINPIDEENIMAVVEFRNKYPRTTLSAVCIGNNVDENIFKYVLAMGVDEAFMFRSVQCKTQDFDDLTIAKVLKRFIKTNKFDLVLTGKSTFSNNVGCVGPALATLLGWHQLYYVCNLLKLTNNELTVQCHAYNRTMTFGIKLPCVLICNFTKLIRYLGLLNIISMLSKPVKVIPLPNLNIKSNPCIETQELLVLNKPRKCKFFDDVNDLMNTIFG
SIO_010081: MAGTDC_RS01550
subclass of: SO_0000673
so part of: MAGTDC_RS01550
location: complement(20111..20851)
location: region:20111-20851:-1
so has part: feature:20111-20851:-1:exon

WP_146656760.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20111-20851:-1:exon

MAGTDC_RS01555
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01555
so part of: sequence
location: complement(21674..22027)
location: region:21674-22027:-1
so has part: feature:21674-22027:-1:exon
subclass of: SO_0000010

79947714
type: Gene
SIO_000068: ncbigene

position:21674:-1
position: 21674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22027:-1
position: 22027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21674-22027:-1:exon

MAGTDC_RS01555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVKMFDKTQRPKDSISWMELIKFYIINSSFRYQNTRIINRIVNILLSDQLLPRLINHLYDLLFTTYEHGYKLLKLLKTKKLIHLHQTTTSMSTLAIMLGLFVISNHTMLLISKTIPS
SIO_010081: MAGTDC_RS01555
subclass of: SO_0000673
so part of: MAGTDC_RS01555
location: complement(21674..22027)
location: region:21674-22027:-1
so has part: feature:21674-22027:-1:exon

WP_192573034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21674-22027:-1:exon

MAGTDC_RS01560
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01560
old locus tag: magtdc_48
so part of: sequence
location: complement(22373..23353)
location: region:22373-23353:-1
so has part: feature:22373-23353:-1:exon
subclass of: SO_0000010

79947715
type: Gene
SIO_000068: ncbigene

position:22373:-1
position: 22373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23353:-1
position: 23353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22373-23353:-1:exon

MAGTDC_RS01560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01560
old locus tag: magtdc_48
EC number: 1.5.1.20
inference: COORDINATES: protein motif:HMM:NF014296.2
GO function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO process: GO:0006555 - methionine metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: methylenetetrahydrofolate reductase
translation: MRLSRVRNTSIARLINQTSVSFVSANSIYVKFSVERFPPRKISNLSKMLKSDLNTNQTKLSEFNSITCSSENKNRLNSTTFLFVVLRRLCNCSIVLHNLLIQMRCMLISNTSMFHDLGMNNMLLISGDKYATNKRRSDDVSPYKIRRLLRKKNVFNIGTGYPDNHILCSGSFQDLFTMLLNRESGCSMHITQIFNHMDNFLRNNLRCSIFKLGSLLPGLFISSKHPLAVDINLKCGIYLTRPVKELLESEYLDERAAFLFNMYRIIEIIKNDITWIQVFTLNKTRILKEIIWMLNDLTYYIRYWRLTNRNECYAVMSDMHNAYKRR
SIO_010081: MAGTDC_RS01560
subclass of: SO_0000673
so part of: MAGTDC_RS01560
location: complement(22373..23353)
location: region:22373-23353:-1
so has part: feature:22373-23353:-1:exon

WP_192573035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22373-23353:-1:exon

MAGTDC_RS01565
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: hisE
locus tag: MAGTDC_RS01565
old locus tag: magtdc_49
so part of: sequence
location: complement(23423..24058)
location: region:23423-24058:-1
so has part: feature:23423-24058:-1:exon
subclass of: SO_0000010

79947716
type: Gene
SIO_000068: ncbigene

position:23423:-1
position: 23423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24058:-1
position: 24058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23423-24058:-1:exon

MAGTDC_RS01565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: hisE
locus tag: MAGTDC_RS01565
old locus tag: magtdc_49
EC number: 3.6.1.31
inference: COORDINATES: protein motif:HMM:TIGR03188.1
GO function: GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: phosphoribosyl-ATP diphosphatase
translation: MMDNVFAGGMRSWNCWNLYELIDLVSIKSQIISDQNSWTTKMVVAGPKLILKKIGEEQTELFLALNYETNREVVMESVDLIFHVVLLARRIGLNLNNIMRLIGYVNTKTSTQHPIKRPNLLRVNKPNYGMNYPLLIHNIRRIKQCNVLFDRLNSSILNLFMVVVGLGTNGCRYHDVLNMLFFDVLRNIITLICNRNIKYSEVVNEVINRTR
SIO_010081: MAGTDC_RS01565
subclass of: SO_0000673
so part of: MAGTDC_RS01565
location: complement(23423..24058)
location: region:23423-24058:-1
so has part: feature:23423-24058:-1:exon

WP_146656763.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23423-24058:-1:exon

MAGTDC_RS01570
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01570
old locus tag: magtdc_50
so part of: sequence
location: complement(24141..24929)
location: region:24141-24929:-1
so has part: feature:24141-24929:-1:exon
subclass of: SO_0000010

79947717
type: Gene
SIO_000068: ncbigene

position:24141:-1
position: 24141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24929:-1
position: 24929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24141-24929:-1:exon

MAGTDC_RS01570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01570
old locus tag: magtdc_50
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002968025.1
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: HisA/HisF-related TIM barrel protein
translation: MTSLTIRIIPCIDVDYNNVVKGTKFSDLTTIGSPSLLANKYSVSGADELCLLNVTASSDNKMILYDTISRIADTCFIPLTVGGGIRTIKDVECLLKAGADKVAINSASVMNPEFIANCVERFGSQCIVSSVDCKAVNGTWEVFSHSGLRSTGIDALEHICKLVQYGAGEILLTSIDKDGTNGGYDIPLLKSVSQLVNVPVVASGGGSEFRHVVSAIIEGGVSAVLLASALHYDRYSVSQLKYFLGRCGILVRDDYLSYGLCD
SIO_010081: MAGTDC_RS01570
subclass of: SO_0000673
so part of: MAGTDC_RS01570
location: complement(24141..24929)
location: region:24141-24929:-1
so has part: feature:24141-24929:-1:exon

WP_146656764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24141-24929:-1:exon

MAGTDC_RS01575
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01575
old locus tag: magtdc_51
so part of: sequence
location: complement(24922..25647)
location: region:24922-25647:-1
so has part: feature:24922-25647:-1:exon
subclass of: SO_0000010

79947718
type: Gene
SIO_000068: ncbigene

position:24922:-1
position: 24922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25647:-1
position: 25647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24922-25647:-1:exon

MAGTDC_RS01575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01575
old locus tag: magtdc_51
inference: COORDINATES: protein motif:HMM:NF013168.2
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: HisA/HisF-related TIM barrel protein
translation: MIYIPAIDIKDNKCVRLYKGDMNRYKVYKNSPTEVIDEFQLQTLSTLHIVDLDGAVCGKPKNFRTIKEFVDLTNCNIQLGGGIRTMDTLERYFDIGVTKVILGTSVLSDMRFLSEACYKYPGRICVSIDTLNGMILDMGWTNNTGRKDHEIIEMIAGFNISFIVWTDINRDGVMEGINTTGLLRVINKSRLPVVVSGGVTNVADLIFLRNNLNDSLAGVICGRALYEGSISIDIIKQLEDD
SIO_010081: MAGTDC_RS01575
subclass of: SO_0000673
so part of: MAGTDC_RS01575
location: complement(24922..25647)
location: region:24922-25647:-1
so has part: feature:24922-25647:-1:exon

WP_192573036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24922-25647:-1:exon

MAGTDC_RS01580
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: hisH
locus tag: MAGTDC_RS01580
old locus tag: magtdc_52
so part of: sequence
location: complement(25647..26318)
location: region:25647-26318:-1
so has part: feature:25647-26318:-1:exon
subclass of: SO_0000010

79947719
type: Gene
SIO_000068: ncbigene

position:26318:-1
position: 26318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25647-26318:-1:exon

MAGTDC_RS01580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: hisH
locus tag: MAGTDC_RS01580
old locus tag: magtdc_52
EC number: 4.3.2.10
inference: COORDINATES: protein motif:HMM:NF012345.2
GO function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: imidazole glycerol phosphate synthase subunit HisH
translation: MSNNKLKVAIIDYGSGNLRSVVSAFEMAARMGSINCDVFVTNKPDDVSDSNKIILPGVGNYFDCFKQLSSIPNMIDALNYSVKIKLTHFLGICVGMQLLSSFSLEGKKTCGLNWIPGSVTKIPPSWNVRVPHIGWSLIKPINNHFLFPTSTSNNSNHSAYFVHSYIYKVLNPSNILASTSFCKDITVAVCNKNIIGVQFHPEKSHNFGIMFCKNFLLWSTEFK
SIO_010081: MAGTDC_RS01580
subclass of: SO_0000673
so part of: MAGTDC_RS01580
location: complement(25647..26318)
location: region:25647-26318:-1
so has part: feature:25647-26318:-1:exon

WP_192573037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25647-26318:-1:exon

MAGTDC_RS01585
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01585
old locus tag: magtdc_53
so part of: sequence
location: complement(26294..26875)
location: region:26294-26875:-1
so has part: feature:26294-26875:-1:exon
subclass of: SO_0000010

79947720
type: Gene
SIO_000068: ncbigene

position:26294:-1
position: 26294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26875:-1
position: 26875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26294-26875:-1:exon

MAGTDC_RS01585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01585
old locus tag: magtdc_53
inference: COORDINATES: protein motif:HMM:NF012687.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: imidazoleglycerol-phosphate dehydratase
translation: MYNYCLRRTTFETDVVGSICHNKNASVIRTGIPFLNHVLSQWSTYSDLCLKLYCVGDVIIDYHHTFEDIGIVLGMLLNNMVIKNNLFRYSHVIIPMDGTLVRCCVDLSGRPGLYWTNSTRYNLFNPILELTYTLFNSLVWNSNISIHIDVIKFDSFHHVAEAIFKAFGTCLFRSINAVQNINSTKGCPIISWK
SIO_010081: MAGTDC_RS01585
subclass of: SO_0000673
so part of: MAGTDC_RS01585
location: complement(26294..26875)
location: region:26294-26875:-1
so has part: feature:26294-26875:-1:exon

WP_146656767.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26294-26875:-1:exon

MAGTDC_RS01590
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01590
old locus tag: magtdc_54
so part of: sequence
location: complement(26883..27290)
location: region:26883-27290:-1
so has part: feature:26883-27290:-1:exon
subclass of: SO_0000010

79947721
type: Gene
SIO_000068: ncbigene

position:26883:-1
position: 26883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27290:-1
position: 27290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26883-27290:-1:exon

MAGTDC_RS01590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01590
old locus tag: magtdc_54
inference: COORDINATES: protein motif:HMM:NF012598.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: uS9 family ribosomal protein
translation: MYKTRTCDGWIHASAGKKTSVAKVKLCLNNKFVFVINNSVNDNRKHDPLFKFITHNVFDLIRHNNFQIFADVKGGGITSQAHAIRLAVVKCLLCLNDGIRPILKANNYITTDCRIVERKKYGHRKSRKSYQFSKR
SIO_010081: MAGTDC_RS01590
subclass of: SO_0000673
so part of: MAGTDC_RS01590
location: complement(26883..27290)
location: region:26883-27290:-1
so has part: feature:26883-27290:-1:exon

WP_192573038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26883-27290:-1:exon

MAGTDC_RS01595
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01595
old locus tag: magtdc_55
so part of: sequence
location: complement(27283..27669)
location: region:27283-27669:-1
so has part: feature:27283-27669:-1:exon
subclass of: SO_0000010

79947722
type: Gene
SIO_000068: ncbigene

position:27283:-1
position: 27283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27669:-1
position: 27669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27283-27669:-1:exon

MAGTDC_RS01595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01595
old locus tag: magtdc_55
inference: COORDINATES: protein motif:HMM:NF012781.2
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: uL13 family ribosomal protein
translation: MSNHHYNKSYVIDLHNRSIGRMASVLILILKKIYNDNPHYTSKLILTNVGSLKISSKLLNKKYWRHTGYPGGIKFKFGYNFDVPTLVKMILLGMLNKTSLDKRLFKTILMINDLQNIPTINNIQYINV
SIO_010081: MAGTDC_RS01595
subclass of: SO_0000673
so part of: MAGTDC_RS01595
location: complement(27283..27669)
location: region:27283-27669:-1
so has part: feature:27283-27669:-1:exon

WP_192573039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27283-27669:-1:exon

MAGTDC_RS05455
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05455
so part of: sequence
location: 27952..28083
location: region:27952-28083:1
so has part: feature:27952-28083:1:exon
subclass of: SO_0000010

79948360
type: Gene
SIO_000068: ncbigene

position:27952:1
position: 27952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28083:1
position: 28083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27952-28083:1:exon

MAGTDC_RS05455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05455
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKWFKPSLSIKINSLVCCTNILNNRIVMDNKFKLSLNRCIRWN
SIO_010081: MAGTDC_RS05455
subclass of: SO_0000673
so part of: MAGTDC_RS05455
location: 27952..28083
location: region:27952-28083:1
so has part: feature:27952-28083:1:exon

WP_278046907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27952-28083:1:exon

MAGTDC_RS04490
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04490
so part of: sequence
location: complement(28578..28733)
location: region:28578-28733:-1
so has part: feature:28578-28733:-1:exon
subclass of: SO_0000010

79948184
type: Gene
SIO_000068: ncbigene

position:28578:-1
position: 28578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28733:-1
position: 28733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28578-28733:-1:exon

MAGTDC_RS04490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLAVIISWIKTYVNFNEVIVVMTCKHVKSNWNILVINWNNKNHKNHGSNHM
SIO_010081: MAGTDC_RS04490
subclass of: SO_0000673
so part of: MAGTDC_RS04490
location: complement(28578..28733)
location: region:28578-28733:-1
so has part: feature:28578-28733:-1:exon

WP_192573040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28578-28733:-1:exon

MAGTDC_RS04495
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04495
so part of: sequence
location: complement(28737..28889)
location: region:28737-28889:-1
so has part: feature:28737-28889:-1:exon
subclass of: SO_0000010

79948185
type: Gene
SIO_000068: ncbigene

position:28737:-1
position: 28737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28889:-1
position: 28889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28737-28889:-1:exon

MAGTDC_RS04495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04495
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVVPNGLFTSFLRKITTSSSLIIKMKPPRIPDFISIGLRKRLILFVQTWG
SIO_010081: MAGTDC_RS04495
subclass of: SO_0000673
so part of: MAGTDC_RS04495
location: complement(28737..28889)
location: region:28737-28889:-1
so has part: feature:28737-28889:-1:exon

WP_192573041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28737-28889:-1:exon

MAGTDC_RS05460
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05460
so part of: sequence
location: complement(29012..29308)
location: region:29012-29308:-1
so has part: feature:29012-29308:-1:exon
subclass of: SO_0000010

79948361
type: Gene
SIO_000068: ncbigene

position:29012:-1
position: 29012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29308:-1
position: 29308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29012-29308:-1:exon

MAGTDC_RS05460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05460
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVNNVRSFGVISDLIGVSNVLITESYNYTVRTPIPHWSQRWQRIWTALLNKHRWSNIESMSLWCRYNEVMSLKGLVLRYRSYRLSITKIQCSVLQTRG
SIO_010081: MAGTDC_RS05460
subclass of: SO_0000673
so part of: MAGTDC_RS05460
location: complement(29012..29308)
location: region:29012-29308:-1
so has part: feature:29012-29308:-1:exon

WP_146656770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29012-29308:-1:exon

MAGTDC_RS05465
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05465
so part of: sequence
location: complement(29316..29438)
location: region:29316-29438:-1
so has part: feature:29316-29438:-1:exon
subclass of: SO_0000010

79948362
type: Gene
SIO_000068: ncbigene

position:29316:-1
position: 29316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29438:-1
position: 29438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29316-29438:-1:exon

MAGTDC_RS05465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLRYKEQPISSLDLLISKQNIDTLLQCCWVGCSVPMPLRL
SIO_010081: MAGTDC_RS05465
subclass of: SO_0000673
so part of: MAGTDC_RS05465
location: complement(29316..29438)
location: region:29316-29438:-1
so has part: feature:29316-29438:-1:exon

WP_278046908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29316-29438:-1:exon

MAGTDC_RS04500
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04500
so part of: sequence
location: complement(29472..29639)
location: region:29472-29639:-1
so has part: feature:29472-29639:-1:exon
subclass of: SO_0000010

79948186
type: Gene
SIO_000068: ncbigene

position:29472:-1
position: 29472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29639:-1
position: 29639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29472-29639:-1:exon

MAGTDC_RS04500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFQWLVHWLLWRSDVVVGESDIEMIGFIDELFNMSKLYPLGSDQWWWRWKRNMME
SIO_010081: MAGTDC_RS04500
subclass of: SO_0000673
so part of: MAGTDC_RS04500
location: complement(29472..29639)
location: region:29472-29639:-1
so has part: feature:29472-29639:-1:exon

WP_192573042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29472-29639:-1:exon

MAGTDC_RS01605
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01605
so part of: sequence
location: 32556..32825
location: region:32556-32825:1
so has part: feature:32556-32825:1:exon
subclass of: SO_0000010

79947723
type: Gene
SIO_000068: ncbigene

position:32556:1
position: 32556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32825:1
position: 32825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32556-32825:1:exon

MAGTDC_RS01605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAIMVLMFCCTLIEVILEIRNIILGIDGYGWSTVLVVVLSLILDLIRTNRNVMVGWDNENMDLILWFIDHGPNEIYLSNSIYGKYHPVS
SIO_010081: MAGTDC_RS01605
subclass of: SO_0000673
so part of: MAGTDC_RS01605
location: 32556..32825
location: region:32556-32825:1
so has part: feature:32556-32825:1:exon

WP_192573043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32556-32825:1:exon

MAGTDC_RS01610
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01610
so part of: sequence
location: complement(33487..33726)
location: region:33487-33726:-1
so has part: feature:33487-33726:-1:exon
subclass of: SO_0000010

79947724
type: Gene
SIO_000068: ncbigene

position:33487:-1
position: 33487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33726:-1
position: 33726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33487-33726:-1:exon

MAGTDC_RS01610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MHIPTVHNLSTTIVTLEHSDSMILISSRLTLTTVSSYVSQSKRSWINKWFDLSFLERNYNMLSEFNKNRDIPITDTNTV
SIO_010081: MAGTDC_RS01610
subclass of: SO_0000673
so part of: MAGTDC_RS01610
location: complement(33487..33726)
location: region:33487-33726:-1
so has part: feature:33487-33726:-1:exon

WP_146656772.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33487-33726:-1:exon

MAGTDC_RS04505
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04505
so part of: sequence
location: complement(33743..33913)
location: region:33743-33913:-1
so has part: feature:33743-33913:-1:exon
subclass of: SO_0000010

79948187
type: Gene
SIO_000068: ncbigene

position:33743:-1
position: 33743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33913:-1
position: 33913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33743-33913:-1:exon

MAGTDC_RS04505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLKWKILIKDINITIMTTTKRWSELVYKINTLDVIYHNLWRIEHFKPKHHPILSDQ
SIO_010081: MAGTDC_RS04505
subclass of: SO_0000673
so part of: MAGTDC_RS04505
location: complement(33743..33913)
location: region:33743-33913:-1
so has part: feature:33743-33913:-1:exon

WP_192573044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33743-33913:-1:exon

MAGTDC_RS04510
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04510
so part of: sequence
location: complement(34039..34410)
location: region:34039-34410:-1
so has part: feature:34039-34410:-1:exon
subclass of: SO_0000010

79948188
type: Gene
SIO_000068: ncbigene

position:34039:-1
position: 34039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34410:-1
position: 34410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34039-34410:-1:exon

MAGTDC_RS04510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLILSKINHHIMSMLKGIRVWLSNLSSLFLHSLKDDRWLMFYLFILLVILLNISKKDSKNGTVYNKHRTDADGEEDDGDEGEGGDERDEDEDTDDDDDDDDDNDDDDGNTDDDDDDNDDDGTT
SIO_010081: MAGTDC_RS04510
subclass of: SO_0000673
so part of: MAGTDC_RS04510
location: complement(34039..34410)
location: region:34039-34410:-1
so has part: feature:34039-34410:-1:exon

WP_192573045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34039-34410:-1:exon