Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant27, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant27, whole genome shotgun sequence.
sequence version: NZ_CM008788.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008788.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008788.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 10386
topology: circular
so has quality: SO_0000988
location: 1..10386
location: region:1-10386:1
RO_0002162: 573658

NZ_CM008788
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10386:1
position: 10386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10386:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant27
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS01250
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01250
so part of: sequence
location: complement(<1..489)
location: region:1-489:-1
so has part: feature:1-489:-1:exon
subclass of: SO_0000010

79947663
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:489:-1
position: 489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-489:-1:exon

MAGTDC_RS01250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRINLTGDVNNNDRLLIDQPQGRLYSLPLFGCRNEIGIRLSKIRLHLSRLFPIAFKDYDVDFRDLVYDYRNQKGYCVVGLKISFIDYDETDEFDLLHSTETVVIPLIKLPLLNDNDVIMVNGLHKMFISQLAEQKDVQVSVTDDRGCITFNTIDFDPFKIKFN
SIO_010081: MAGTDC_RS01250
subclass of: SO_0000673
so part of: MAGTDC_RS01250
location: complement(<1..489)
location: region:1-489:-1
so has part: feature:1-489:-1:exon

WP_146656705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-489:-1:exon

MAGTDC_RS04390
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04390
so part of: sequence
location: complement(696..833)
location: region:696-833:-1
so has part: feature:696-833:-1:exon
subclass of: SO_0000010

79948166
type: Gene
SIO_000068: ncbigene

position:696:-1
position: 696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:833:-1
position: 833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696-833:-1:exon

MAGTDC_RS04390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLKSCSNVELINLLLWYKRDRLYGQLKSKSLKVGTYWSVGTTRWQ
SIO_010081: MAGTDC_RS04390
subclass of: SO_0000673
so part of: MAGTDC_RS04390
location: complement(696..833)
location: region:696-833:-1
so has part: feature:696-833:-1:exon

WP_192573011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:696-833:-1:exon

MAGTDC_RS01260
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01260
old locus tag: magtdc_174
so part of: sequence
location: complement(940..2388)
location: region:940-2388:-1
so has part: feature:940-2388:-1:exon
subclass of: SO_0000010

79947664
type: Gene
SIO_000068: ncbigene

position:940:-1
position: 940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2388:-1
position: 2388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:940-2388:-1:exon

MAGTDC_RS01260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01260
old locus tag: magtdc_174
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: AAA family ATPase
translation: MGTSIVLLATSSNAGKTFICSCLCKIARNIGLRVVPFKAQNMSNASFKNHEQIGCINVAQWIQSVASNQFSSSDFNPFWIKPLGERISQLYVEGDLIRCKFTYPSSRRLRTRMKTKIIDKINWLKNQNDLVVIEGAGSIAEGNLMAFDVGNVWLAKRTSSKISLIADMERGGALASIAGTSCLMCNSEHHMINGFLLNKFVGRVSLLSSGLKSLEKITEWSCLGIIPWIVEALKLPWEDTLFDRYHQLDNKPMVFVVDVLFGNGLDELNGLNLESNLNVVMLKSAPNWIPRELRIIILPDSGSVVSTITRLHQTNWSDYLIRTRTHGVLIIGVGAGFLATCSSFGWFKGSTWTDLKTFDANTLCLTTSSYSLCCKCEFLSATFRACASLYAPWLHRIYGNQNKYEQLIECTGFCYGVRRSNVWGIGVNGVFMSDSFRSGLMRFIGVKPSELVYENHVQAIMADAAIKVANCIGINLYRLFGL
SIO_010081: MAGTDC_RS01260
subclass of: SO_0000673
so part of: MAGTDC_RS01260
location: complement(940..2388)
location: region:940-2388:-1
so has part: feature:940-2388:-1:exon

WP_146656707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:940-2388:-1:exon

MAGTDC_RS05375
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05375
so part of: sequence
location: 3139..3267
location: region:3139-3267:1
so has part: feature:3139-3267:1:exon
subclass of: SO_0000010

79948344
type: Gene
SIO_000068: ncbigene

position:3139:1
position: 3139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3267:1
position: 3267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3139-3267:1:exon

MAGTDC_RS05375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05375
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLALMFEIGERFKFKAVTVDKITCLDKMLVVNGVEIQRSGVG
SIO_010081: MAGTDC_RS05375
subclass of: SO_0000673
so part of: MAGTDC_RS05375
location: 3139..3267
location: region:3139-3267:1
so has part: feature:3139-3267:1:exon

WP_278046898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3139-3267:1:exon

MAGTDC_RS01265
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01265
so part of: sequence
location: 3682..3999
location: region:3682-3999:1
so has part: feature:3682-3999:1:exon
subclass of: SO_0000010

79947665
type: Gene
SIO_000068: ncbigene

position:3682:1
position: 3682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3999:1
position: 3999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3682-3999:1:exon

MAGTDC_RS01265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01265
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDGWEVRNGMRECWFKEVLWLWLRGVKWLYFANRINRWMSNKWGSCVKVIIGVGGLWVGHRSYLYWSWYISSQWEVLVKLLQQVHPLIDWDNTPYDVGLLPSDWV
SIO_010081: MAGTDC_RS01265
subclass of: SO_0000673
so part of: MAGTDC_RS01265
location: 3682..3999
location: region:3682-3999:1
so has part: feature:3682-3999:1:exon

WP_192573012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3682-3999:1:exon

MAGTDC_RS01270
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01270
so part of: sequence
location: complement(4276..4458)
location: region:4276-4458:-1
so has part: feature:4276-4458:-1:exon
subclass of: SO_0000010

79947666
type: Gene
SIO_000068: ncbigene

position:4276:-1
position: 4276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4458:-1
position: 4458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4276-4458:-1:exon

MAGTDC_RS01270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTLTSRYPKRTTQTEPKPNLHLSKRNNNFNELLTQNPDYPIPDHVNHNDLTNYILFIIGN
SIO_010081: MAGTDC_RS01270
subclass of: SO_0000673
so part of: MAGTDC_RS01270
location: complement(4276..4458)
location: region:4276-4458:-1
so has part: feature:4276-4458:-1:exon

WP_146656709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4276-4458:-1:exon

MAGTDC_RS04395
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04395
so part of: sequence
location: complement(5224..5370)
location: region:5224-5370:-1
so has part: feature:5224-5370:-1:exon
subclass of: SO_0000010

79948167
type: Gene
SIO_000068: ncbigene

position:5224:-1
position: 5224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5370:-1
position: 5370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5224-5370:-1:exon

MAGTDC_RS04395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04395
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MHVPNERCYPFMVRPILILINPIEFYTRKNKPTHIHHVNVVITHQSKI
SIO_010081: MAGTDC_RS04395
subclass of: SO_0000673
so part of: MAGTDC_RS04395
location: complement(5224..5370)
location: region:5224-5370:-1
so has part: feature:5224-5370:-1:exon

WP_192573006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5224-5370:-1:exon

MAGTDC_RS05380
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05380
so part of: sequence
location: 5957..6091
location: region:5957-6091:1
so has part: feature:5957-6091:1:exon
subclass of: SO_0000010

79948345
type: Gene
SIO_000068: ncbigene

position:5957:1
position: 5957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6091:1
position: 6091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5957-6091:1:exon

MAGTDC_RS05380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05380
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVSYMDNRLLCLESSLWTNEEVGSLMGWFEWGLVFDNGWELQLC
SIO_010081: MAGTDC_RS05380
subclass of: SO_0000673
so part of: MAGTDC_RS05380
location: 5957..6091
location: region:5957-6091:1
so has part: feature:5957-6091:1:exon

WP_278046895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5957-6091:1:exon

MAGTDC_RS01280
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01280
so part of: sequence
location: 6426..6611
location: region:6426-6611:1
so has part: feature:6426-6611:1:exon
subclass of: SO_0000010

79947667
type: Gene
SIO_000068: ncbigene

position:6426:1
position: 6426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6611:1
position: 6611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6426-6611:1:exon

MAGTDC_RS01280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGRLNGCWDNVCLNWCMGVVRWYLGGLLRTDRFLVVNSYNVGGLEVSWWGVRCGECVMMGV
SIO_010081: MAGTDC_RS01280
subclass of: SO_0000673
so part of: MAGTDC_RS01280
location: 6426..6611
location: region:6426-6611:1
so has part: feature:6426-6611:1:exon

WP_146656711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6426-6611:1:exon

MAGTDC_RS04400
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04400
so part of: sequence
location: 7028..7264
location: region:7028-7264:1
so has part: feature:7028-7264:1:exon
subclass of: SO_0000010

79948168
type: Gene
SIO_000068: ncbigene

position:7028:1
position: 7028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7264:1
position: 7264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7028-7264:1:exon

MAGTDC_RS04400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04400
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLEVCMWRLGRNKALDKVCHNDVLSWREVWVGFCFGMRLLWVLTHIWLVGSKIEVGMKEKVGKWLWSSRGWNCWGLCD
SIO_010081: MAGTDC_RS04400
subclass of: SO_0000673
so part of: MAGTDC_RS04400
location: 7028..7264
location: region:7028-7264:1
so has part: feature:7028-7264:1:exon

WP_192573007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7028-7264:1:exon

MAGTDC_RS01290
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01290
so part of: sequence
location: 7698..7913
location: region:7698-7913:1
so has part: feature:7698-7913:1:exon
subclass of: SO_0000010

79947668
type: Gene
SIO_000068: ncbigene

position:7698:1
position: 7698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7913:1
position: 7913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7698-7913:1:exon

MAGTDC_RS01290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01290
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVVGYGKWNMVGNGLKGNNDGLKSWVVVRINGCLYVGWFDGGWRVGIGQLLMGQMLWSEVVVGLYKVGVGG
SIO_010081: MAGTDC_RS01290
subclass of: SO_0000673
so part of: MAGTDC_RS01290
location: 7698..7913
location: region:7698-7913:1
so has part: feature:7698-7913:1:exon

WP_278046896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7698-7913:1:exon

MAGTDC_RS04405
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04405
so part of: sequence
location: 8131..8295
location: region:8131-8295:1
so has part: feature:8131-8295:1:exon
subclass of: SO_0000010

79948169
type: Gene
SIO_000068: ncbigene

position:8131:1
position: 8131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8295:1
position: 8295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8131-8295:1:exon

MAGTDC_RS04405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04405
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVVSMGLGSTLYKLLVGVNKDRFIGFMRVGCGGWLWGGDYSDVWLDKCGFWYVG
SIO_010081: MAGTDC_RS04405
subclass of: SO_0000673
so part of: MAGTDC_RS04405
location: 8131..8295
location: region:8131-8295:1
so has part: feature:8131-8295:1:exon

WP_192573009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8131-8295:1:exon

MAGTDC_RS05385
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05385
so part of: sequence
location: 8298..8420
location: region:8298-8420:1
so has part: feature:8298-8420:1:exon
subclass of: SO_0000010

79948346
type: Gene
SIO_000068: ncbigene

position:8298:1
position: 8298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8420:1
position: 8420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8298-8420:1:exon

MAGTDC_RS05385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIWFGVLFRVGYKIGWVCRGIGVGLEDLLDVMEEVEVMED
SIO_010081: MAGTDC_RS05385
subclass of: SO_0000673
so part of: MAGTDC_RS05385
location: 8298..8420
location: region:8298-8420:1
so has part: feature:8298-8420:1:exon

WP_278046897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8298-8420:1:exon

MAGTDC_RS01295
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01295
so part of: sequence
location: 8630..8812
location: region:8630-8812:1
so has part: feature:8630-8812:1:exon
subclass of: SO_0000010

79947669
type: Gene
SIO_000068: ncbigene

position:8630:1
position: 8630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8812:1
position: 8812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8630-8812:1:exon

MAGTDC_RS01295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01295
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVWVGWDVCWVWEVGVGWLVCCRLYHWVNYRRDGVVLVRDGYVWGMYWYLRGWKVGLACW
SIO_010081: MAGTDC_RS01295
subclass of: SO_0000673
so part of: MAGTDC_RS01295
location: 8630..8812
location: region:8630-8812:1
so has part: feature:8630-8812:1:exon

WP_146656714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8630-8812:1:exon

MAGTDC_RS01300
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01300
old locus tag: magtdc_176
so part of: sequence
location: complement(9068..9997)
location: region:9068-9997:-1
so has part: feature:9068-9997:-1:exon
subclass of: SO_0000010

79947670
type: Gene
SIO_000068: ncbigene

position:9068:-1
position: 9068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9997:-1
position: 9997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9068-9997:-1:exon

MAGTDC_RS01300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01300
old locus tag: magtdc_176
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAVVHTISILKYLVGANLKHLIYNENGNPIVTCYAVVGQWLIRTETARGGYPHAEVLCLSELGREKPTEVILSLSPCTEFNNTPPCCYSLLAFCSSLTILELDITQAESIRFLRCFISIGWMKSRSVSLISSMGFMVNVNSQQQLLDQRTRLLTRNIYPNPSIFEVTKNSVIPEQKTDVLTRLRILSKKLNRDIRSGTVPIKLPVEISLSTSLKNKINKIHRSLIYSRMISRRLKRLTMCLATTNDMNFIDPITTNTDLFMTRINPTIPLSKRTNFNFRPRTNNLNTLLYRNIRPLTRRLFFINQIIDY
SIO_010081: MAGTDC_RS01300
subclass of: SO_0000673
so part of: MAGTDC_RS01300
location: complement(9068..9997)
location: region:9068-9997:-1
so has part: feature:9068-9997:-1:exon

WP_146656715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9068-9997:-1:exon

MAGTDC_RS04410
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04410
so part of: sequence
location: 10085..>10286
location: region:10085-10286:1
so has part: feature:10085-10286:1:exon
subclass of: SO_0000010

79948170
type: Gene
SIO_000068: ncbigene

position:10085:1
position: 10085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10286:1
position: 10286
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10085-10286:1:exon

MAGTDC_RS04410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04410
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGSVMGMALDVWDGRVCGEMEDRTLLIWTRFLVGSRVISRLFVGGSGDRIEMKYGRIGGCSGRLEVL
SIO_010081: MAGTDC_RS04410
subclass of: SO_0000673
so part of: MAGTDC_RS04410
location: 10085..>10286
location: region:10085-10286:1
so has part: feature:10085-10286:1:exon

WP_192573010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10085-10286:1:exon