Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant25, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant25, whole genome shotgun sequence.
sequence version: NZ_CM008786.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008786.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008786.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 13831
topology: circular
so has quality: SO_0000988
location: 1..13831
location: region:1-13831:1
RO_0002162: 573658

NZ_CM008786
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13831:1
position: 13831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13831:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant25
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS04355
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04355
so part of: sequence
location: 558..737
location: region:558-737:1
so has part: feature:558-737:1:exon
subclass of: SO_0000010

79948159
type: Gene
SIO_000068: ncbigene

position:558:1
position: 558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:737:1
position: 737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:558-737:1:exon

MAGTDC_RS04355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04355
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLANGCLMLFVVLSVLLDQFGLKDLNVILVGCYLFMLGSSEVWGYMVVVDVLRVKLIVI
SIO_010081: MAGTDC_RS04355
subclass of: SO_0000673
so part of: MAGTDC_RS04355
location: 558..737
location: region:558-737:1
so has part: feature:558-737:1:exon

WP_278046892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:558-737:1:exon

MAGTDC_RS01140
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01140
old locus tag: magtdc_163
so part of: sequence
location: complement(1131..4325)
location: region:1131-4325:-1
so has part: feature:1131-4325:-1:exon
subclass of: SO_0000010

79947645
type: Gene
SIO_000068: ncbigene

position:1131:-1
position: 1131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4325:-1
position: 4325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1131-4325:-1:exon

MAGTDC_RS01140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01140
old locus tag: magtdc_163
EC number: 6.6.1.2
inference: COORDINATES: protein motif:HMM:NF014563.2
GO process: GO:0009058 - biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: cobaltochelatase subunit CobN
translation: MEILFCSDKQTDLAAVVKLLRTSPTSRLINLILINGNCKSLEHFSASAKLASLVAIRLRQTTKHSMELLKLASTLATKYKFILTPIIGDIHLLPESYNYANVPNVVIDGLWQCCILSRTRLLAKHLCDFLDAGNDIEIMDKPKSSEVKIFKLNETPTRNQDNNVLICCYGISENDGFVKQVTQKLILAKQRPIILCNNGQLHSNWLDNCNLIRTRYLPKIELNIVCFCNVPTMRLNKTVTIQTAQSEKLLKQVSIDLTGLTTPEIVRKVWLPETEGKIFTKAIGISKPNLCLTQPTYNNNKITISNRVNSVTSSLINQIGLKSNKRKIVYILANYPPDDSRIGNGVGLDTLESITNINGMVNKNTLNGRSLIEVLIDGVTNKTNLNRSIRATVSLNLANRQRINWVSDVEKNWGPLSLDAFVISGFCTVPALRLGTNMVIIQPTRGYGLTNPSIHHSTFVVPCAFYCLSYLFIKRTNPNALILNIGKHGNLEWMPGRSVALSRWCYPERIAGSTTNAYLYIVNDPGEGIQAKRRISSTIIDHDIPPVTEYPTTPDWKGTGFNCYSNLGNEYICSLLDLQFKCKLHCWCEFSLHEIVYSTLVLNKWQLSTRSVNLSLNVNQWWKAKHKWMTCSNLAKRAMFMEHSVLQIKDMDVVMRLVSLRLAGCYNELNSITKAQHNCFIQPGLASSFTRADDNILPTGRNFYIKNTNEMPTPFAYNIGKTVVSKLIRSYYHRSCKWLRSVAINVWATSNMRTGGDDIAIIMNLIGVKPIWHVTSSEVIGFEVLPLTQLQRPRINVLVRVSGLFRDTCPLILTRLHKMFSVVEGLQENPKDPSRWSGTLFSSKPGSYGVGIQELLDCRNLPSISCLATKYMIYGGYCFNGKTWINATGKLSQTLTKTQVILQTQDNYEHDILDSDDYYQFEGGLNAAIRHCRGGVCAYHVDTSQSMQRCIRIRRLKYELARVVTCKLLNKNWMLKMLESGYRGAAEILTNLSHFCNFAVTTGQTFDAQFDAIYALLFQNKDIMLSITKSNPDAYLTMKQKLFEIVCSGTWQAPSNSFRLYLGS
SIO_010081: MAGTDC_RS01140
subclass of: SO_0000673
so part of: MAGTDC_RS01140
location: complement(1131..4325)
location: region:1131-4325:-1
so has part: feature:1131-4325:-1:exon

WP_146656684.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1131-4325:-1:exon

MAGTDC_RS04360
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04360
so part of: sequence
location: 4404..4547
location: region:4404-4547:1
so has part: feature:4404-4547:1:exon
subclass of: SO_0000010

79948160
type: Gene
SIO_000068: ncbigene

position:4404:1
position: 4404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4547:1
position: 4547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4404-4547:1:exon

MAGTDC_RS04360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLLRFWMNDWMGCLFSLWESLLFRCDEGGISRVLVWMMGWDELCDMV
SIO_010081: MAGTDC_RS04360
subclass of: SO_0000673
so part of: MAGTDC_RS04360
location: 4404..4547
location: region:4404-4547:1
so has part: feature:4404-4547:1:exon

WP_192573001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4404-4547:1:exon

MAGTDC_RS04365
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04365
so part of: sequence
location: 4727..4879
location: region:4727-4879:1
so has part: feature:4727-4879:1:exon
subclass of: SO_0000010

79948161
type: Gene
SIO_000068: ncbigene

position:4727:1
position: 4727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4879:1
position: 4879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4727-4879:1:exon

MAGTDC_RS04365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04365
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFVGWWTGKDGSYGEGWWLEVGYMLWVCRFIDDLVLIRGLGVLLGCLTVG
SIO_010081: MAGTDC_RS04365
subclass of: SO_0000673
so part of: MAGTDC_RS04365
location: 4727..4879
location: region:4727-4879:1
so has part: feature:4727-4879:1:exon

WP_192573002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4727-4879:1:exon

MAGTDC_RS05325
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05325
so part of: sequence
location: 5057..5182
location: region:5057-5182:1
so has part: feature:5057-5182:1:exon
subclass of: SO_0000010

79948334
type: Gene
SIO_000068: ncbigene

position:5057:1
position: 5057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5182:1
position: 5182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5057-5182:1:exon

MAGTDC_RS05325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05325
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGSVHGFVWLLVGVVVDGLMKVWMGLCYGLVLLGLVGIWWT
SIO_010081: MAGTDC_RS05325
subclass of: SO_0000673
so part of: MAGTDC_RS05325
location: 5057..5182
location: region:5057-5182:1
so has part: feature:5057-5182:1:exon

WP_278046893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5057-5182:1:exon

MAGTDC_RS01145
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01145
so part of: sequence
location: 5411..5656
location: region:5411-5656:1
so has part: feature:5411-5656:1:exon
subclass of: SO_0000010

79947646
type: Gene
SIO_000068: ncbigene

position:5411:1
position: 5411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5656:1
position: 5656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5411-5656:1:exon

MAGTDC_RS01145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01145
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVDIYWMDVGGCKLEVVWWLGEVLMVLFDKCGWWTDWFGVVLGLEKTKRWGVGWVRLFGMLGWIVGVRCRVQEVNLLDSLM
SIO_010081: MAGTDC_RS01145
subclass of: SO_0000673
so part of: MAGTDC_RS01145
location: 5411..5656
location: region:5411-5656:1
so has part: feature:5411-5656:1:exon

WP_146656685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5411-5656:1:exon

MAGTDC_RS01150
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01150
so part of: sequence
location: 5741..6091
location: region:5741-6091:1
so has part: feature:5741-6091:1:exon
subclass of: SO_0000010

79947647
type: Gene
SIO_000068: ncbigene

position:5741:1
position: 5741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6091:1
position: 6091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5741-6091:1:exon

MAGTDC_RS01150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTGLERWQQDVGVGLSRLCRGWRRLRDSWWWDVGGHRCRFVWICWRLVRSLLWEWRHGCWFVFNLLVRGWWELGLMGFGPWMGSWMEVGLGTWSMGDGLFGVLVVWTLDTNNVWLC
SIO_010081: MAGTDC_RS01150
subclass of: SO_0000673
so part of: MAGTDC_RS01150
location: 5741..6091
location: region:5741-6091:1
so has part: feature:5741-6091:1:exon

WP_146656686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5741-6091:1:exon

MAGTDC_RS01155
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01155
so part of: sequence
location: 6091..6321
location: region:6091-6321:1
so has part: feature:6091-6321:1:exon
subclass of: SO_0000010

79947648
type: Gene
SIO_000068: ncbigene

position:6321:1
position: 6321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6091-6321:1:exon

MAGTDC_RS01155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MATGRDGINGGCFVDGKIVMGLGGCCGELLGMVVNEGGCWWIGWWLIGVKHRWWSLVYGRSMCYGLWLNMEQSTSG
SIO_010081: MAGTDC_RS01155
subclass of: SO_0000673
so part of: MAGTDC_RS01155
location: 6091..6321
location: region:6091-6321:1
so has part: feature:6091-6321:1:exon

WP_192573004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6091-6321:1:exon

MAGTDC_RS01160
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01160
so part of: sequence
location: 6344..6631
location: region:6344-6631:1
so has part: feature:6344-6631:1:exon
subclass of: SO_0000010

79947649
type: Gene
SIO_000068: ncbigene

position:6344:1
position: 6344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6631:1
position: 6631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6344-6631:1:exon

MAGTDC_RS01160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRARIKFNLLVRWLFPNLEHASWFNFSIPDVRVVLIEFIKLMSSRLPESKCLRINVLRSLEKLFCVVILCCGLLGYRDEDRWEYAWTEVTWDINC
SIO_010081: MAGTDC_RS01160
subclass of: SO_0000673
so part of: MAGTDC_RS01160
location: 6344..6631
location: region:6344-6631:1
so has part: feature:6344-6631:1:exon

WP_146656688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6344-6631:1:exon

MAGTDC_RS04370
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04370
so part of: sequence
location: 6789..6956
location: region:6789-6956:1
so has part: feature:6789-6956:1:exon
subclass of: SO_0000010

79948162
type: Gene
SIO_000068: ncbigene

position:6789:1
position: 6789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6956:1
position: 6956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6789-6956:1:exon

MAGTDC_RS04370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MMEVWYQVFDEIDASCRVFGDGISICWIIHYFVVMFRWWVDNIFLLWLVCNTCGV
SIO_010081: MAGTDC_RS04370
subclass of: SO_0000673
so part of: MAGTDC_RS04370
location: 6789..6956
location: region:6789-6956:1
so has part: feature:6789-6956:1:exon

WP_278046894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6789-6956:1:exon

MAGTDC_RS01165
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01165
so part of: sequence
location: 7019..7360
location: region:7019-7360:1
so has part: feature:7019-7360:1:exon
subclass of: SO_0000010

79947650
type: Gene
SIO_000068: ncbigene

position:7019:1
position: 7019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7360:1
position: 7360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7019-7360:1:exon

MAGTDC_RS01165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01165
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLLLSGLICFVNICFWVLVLEVICWVGWIYGQSFDVICLGGLGCVKKDVDGVGIRFTSWMERGRMKWSSHVDVWVRREASWGLGMFTGLGRDVLRGCWAGIRFPFLGCWSSVR
SIO_010081: MAGTDC_RS01165
subclass of: SO_0000673
so part of: MAGTDC_RS01165
location: 7019..7360
location: region:7019-7360:1
so has part: feature:7019-7360:1:exon

WP_146656689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7019-7360:1:exon

MAGTDC_RS05330
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05330
so part of: sequence
location: 7392..7532
location: region:7392-7532:1
so has part: feature:7392-7532:1:exon
subclass of: SO_0000010

79948335
type: Gene
SIO_000068: ncbigene

position:7392:1
position: 7392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7532:1
position: 7532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7392-7532:1:exon

MAGTDC_RS05330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIEIRFGYVWYLLLVHDGVGKGLEIGKRLVLGLGWFRGDEERVLEG
SIO_010081: MAGTDC_RS05330
subclass of: SO_0000673
so part of: MAGTDC_RS05330
location: 7392..7532
location: region:7392-7532:1
so has part: feature:7392-7532:1:exon

WP_278046884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7392-7532:1:exon

MAGTDC_RS05335
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05335
so part of: sequence
location: 7541..7693
location: region:7541-7693:1
so has part: feature:7541-7693:1:exon
subclass of: SO_0000010

79948336
type: Gene
SIO_000068: ncbigene

position:7541:1
position: 7541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7693:1
position: 7693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7541-7693:1:exon

MAGTDC_RS05335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05335
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLPTFGWVWDVWVLGFGLVLRLLEVELWVVLEVRRWHRMWMRVLILDEIL
SIO_010081: MAGTDC_RS05335
subclass of: SO_0000673
so part of: MAGTDC_RS05335
location: 7541..7693
location: region:7541-7693:1
so has part: feature:7541-7693:1:exon

WP_278046885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7541-7693:1:exon

MAGTDC_RS05340
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05340
so part of: sequence
location: 7709..7891
location: region:7709-7891:1
so has part: feature:7709-7891:1:exon
subclass of: SO_0000010

79948337
type: Gene
SIO_000068: ncbigene

position:7709:1
position: 7709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7891:1
position: 7891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7709-7891:1:exon

MAGTDC_RS05340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MQRVLVKMRDVGDEFSRLVLAVDPEDVMSMMMFEMPTKGSISVVDLDLVTWSCLMFLVVM
SIO_010081: MAGTDC_RS05340
subclass of: SO_0000673
so part of: MAGTDC_RS05340
location: 7709..7891
location: region:7709-7891:1
so has part: feature:7709-7891:1:exon

WP_278046886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7709-7891:1:exon

MAGTDC_RS05345
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05345
so part of: sequence
location: 7895..8179
location: region:7895-8179:1
so has part: feature:7895-8179:1:exon
subclass of: SO_0000010

79948338
type: Gene
SIO_000068: ncbigene

position:7895:1
position: 7895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8179:1
position: 8179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7895-8179:1:exon

MAGTDC_RS05345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDICWYFVDRIGVKHRRKGGRFNDLLQDRGVRRLRLACDWLKVLSSFMCLLLVSSIRSSPVKPKDRFPEVNSDAMFGADISLISRLEDVVSLPR
SIO_010081: MAGTDC_RS05345
subclass of: SO_0000673
so part of: MAGTDC_RS05345
location: 7895..8179
location: region:7895-8179:1
so has part: feature:7895-8179:1:exon

WP_278046887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7895-8179:1:exon

MAGTDC_RS05350
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05350
so part of: sequence
location: 8204..8350
location: region:8204-8350:1
so has part: feature:8204-8350:1:exon
subclass of: SO_0000010

79948339
type: Gene
SIO_000068: ncbigene

position:8204:1
position: 8204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8350:1
position: 8350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8204-8350:1:exon

MAGTDC_RS05350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05350
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRSLDLRMVSSVLAILPLEGRPRLGCSFMLVVVSKLVSEGYVSGLGCC
SIO_010081: MAGTDC_RS05350
subclass of: SO_0000673
so part of: MAGTDC_RS05350
location: 8204..8350
location: region:8204-8350:1
so has part: feature:8204-8350:1:exon

WP_278046888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8204-8350:1:exon

MAGTDC_RS05355
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05355
so part of: sequence
location: 8458..8613
location: region:8458-8613:1
so has part: feature:8458-8613:1:exon
subclass of: SO_0000010

79948340
type: Gene
SIO_000068: ncbigene

position:8458:1
position: 8458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8613:1
position: 8613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8458-8613:1:exon

MAGTDC_RS05355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05355
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLGVLVLDCNWLRFVDVWLVWVVTVCLGSVRGYGVFVVRGVGLFVCGVVVF
SIO_010081: MAGTDC_RS05355
subclass of: SO_0000673
so part of: MAGTDC_RS05355
location: 8458..8613
location: region:8458-8613:1
so has part: feature:8458-8613:1:exon

WP_278046889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8458-8613:1:exon

MAGTDC_RS01175
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01175
so part of: sequence
location: 8922..9206
location: region:8922-9206:1
so has part: feature:8922-9206:1:exon
subclass of: SO_0000010

79947651
type: Gene
SIO_000068: ncbigene

position:8922:1
position: 8922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9206:1
position: 9206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8922-9206:1:exon

MAGTDC_RS01175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01175
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNWEERNGRRMGFKILDNMFVVGWGKYGVAYERVCFCWVYCFVRSNVLGRLDPGWGMYLGERDNVRFTVMGSDLFLMEQQDVIKCVDVFDRQVI
SIO_010081: MAGTDC_RS01175
subclass of: SO_0000673
so part of: MAGTDC_RS01175
location: 8922..9206
location: region:8922-9206:1
so has part: feature:8922-9206:1:exon

WP_146656690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8922-9206:1:exon

MAGTDC_RS01180
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01180
so part of: sequence
location: 9652..9948
location: region:9652-9948:1
so has part: feature:9652-9948:1:exon
subclass of: SO_0000010

79947652
type: Gene
SIO_000068: ncbigene

position:9652:1
position: 9652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9948:1
position: 9948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9652-9948:1:exon

MAGTDC_RS01180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01180
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGVWGVFNMNGMFGGGVVWYKDGDWGSLEIWRRGIDEDRRGGLWSLMGKRLEMEVGCFGEELELEVWRFERREKWVWYEWGLVPRMLERWDRGRIEGI
SIO_010081: MAGTDC_RS01180
subclass of: SO_0000673
so part of: MAGTDC_RS01180
location: 9652..9948
location: region:9652-9948:1
so has part: feature:9652-9948:1:exon

WP_146656691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9652-9948:1:exon

MAGTDC_RS04375
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04375
so part of: sequence
location: 9993..10154
location: region:9993-10154:1
so has part: feature:9993-10154:1:exon
subclass of: SO_0000010

79948163
type: Gene
SIO_000068: ncbigene

position:9993:1
position: 9993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10154:1
position: 10154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9993-10154:1:exon

MAGTDC_RS04375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04375
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIGGLSVEVEIGGYWRLVCLSMVGGGIKRYNVEVDGGCVGIMVWDVLVIGVSV
SIO_010081: MAGTDC_RS04375
subclass of: SO_0000673
so part of: MAGTDC_RS04375
location: 9993..10154
location: region:9993-10154:1
so has part: feature:9993-10154:1:exon

WP_192572996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9993-10154:1:exon

MAGTDC_RS04380
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04380
so part of: sequence
location: 10512..10658
location: region:10512-10658:1
so has part: feature:10512-10658:1:exon
subclass of: SO_0000010

79948164
type: Gene
SIO_000068: ncbigene

position:10512:1
position: 10512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10658:1
position: 10658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10512-10658:1:exon

MAGTDC_RS04380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04380
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLWRGCSDVVCWYEVLRDLKKLLGFRVGFCSMTWMFDWSLSMSLWLGR
SIO_010081: MAGTDC_RS04380
subclass of: SO_0000673
so part of: MAGTDC_RS04380
location: 10512..10658
location: region:10512-10658:1
so has part: feature:10512-10658:1:exon

WP_192572997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10512-10658:1:exon

MAGTDC_RS04385
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04385
so part of: sequence
location: 10643..10807
location: region:10643-10807:1
so has part: feature:10643-10807:1:exon
subclass of: SO_0000010

79948165
type: Gene
SIO_000068: ncbigene

position:10643:1
position: 10643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10807:1
position: 10807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10643-10807:1:exon

MAGTDC_RS04385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIGSVEVEVVSFCCCSLIVLLVGYCGSVSIRCCWMVRRWEVGYGVWGVLVVGGI
SIO_010081: MAGTDC_RS04385
subclass of: SO_0000673
so part of: MAGTDC_RS04385
location: 10643..10807
location: region:10643-10807:1
so has part: feature:10643-10807:1:exon

WP_192572998.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10643-10807:1:exon

MAGTDC_RS01185
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01185
so part of: sequence
location: 11478..11798
location: region:11478-11798:1
so has part: feature:11478-11798:1:exon
subclass of: SO_0000010

79947653
type: Gene
SIO_000068: ncbigene

position:11478:1
position: 11478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11798:1
position: 11798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11478-11798:1:exon

MAGTDC_RS01185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01185
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLDAGCWSGVNVVMVQMFDNGITFTCMVVLLLVGCFRIRIRLCVLVIGMVVLDGFLFKVLEVRVGVGGIVCCWRFGLLCWGGDGVDGTLWVRVVRVLGCWLGGLIK
SIO_010081: MAGTDC_RS01185
subclass of: SO_0000673
so part of: MAGTDC_RS01185
location: 11478..11798
location: region:11478-11798:1
so has part: feature:11478-11798:1:exon

WP_146656692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11478-11798:1:exon

MAGTDC_RS01190
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01190
so part of: sequence
location: 12247..12438
location: region:12247-12438:1
so has part: feature:12247-12438:1:exon
subclass of: SO_0000010

79947654
type: Gene
SIO_000068: ncbigene

position:12247:1
position: 12247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12438:1
position: 12438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12247-12438:1:exon

MAGTDC_RS01190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01190
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVVIVWGYCNINVVICIWRCLSIDVVGVFDEGLRMRGCWVVVLELRLNWIYWEISWRLRDKCG
SIO_010081: MAGTDC_RS01190
subclass of: SO_0000673
so part of: MAGTDC_RS01190
location: 12247..12438
location: region:12247-12438:1
so has part: feature:12247-12438:1:exon

WP_146656693.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12247-12438:1:exon

MAGTDC_RS01195
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01195
so part of: sequence
location: 12431..12733
location: region:12431-12733:1
so has part: feature:12431-12733:1:exon
subclass of: SO_0000010

79947655
type: Gene
SIO_000068: ncbigene

position:12431:1
position: 12431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12733:1
position: 12733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12431-12733:1:exon

MAGTDC_RS01195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01195
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVREGGEWSNGFGDGDVWGLDVGSVKRTERMGMGGLIKRSVREDLDVVYLMMKTRWRVVVQLLVLLKIWISFCVVLMKLASKVSLVMFERMLVWRMGVRK
SIO_010081: MAGTDC_RS01195
subclass of: SO_0000673
so part of: MAGTDC_RS01195
location: 12431..12733
location: region:12431-12733:1
so has part: feature:12431-12733:1:exon

WP_146656694.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12431-12733:1:exon

MAGTDC_RS05360
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05360
so part of: sequence
location: 13294..13518
location: region:13294-13518:1
so has part: feature:13294-13518:1:exon
subclass of: SO_0000010

79948341
type: Gene
SIO_000068: ncbigene

position:13294:1
position: 13294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13518:1
position: 13518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13294-13518:1:exon

MAGTDC_RS05360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIGHWPQVAVGMGCYGYVIGRCHNMVTGGIDLNSFPCWKPSLTGQLMGIGWNYGNNEMMSRWVGGGRWNFWLSV
SIO_010081: MAGTDC_RS05360
subclass of: SO_0000673
so part of: MAGTDC_RS05360
location: 13294..13518
location: region:13294-13518:1
so has part: feature:13294-13518:1:exon

WP_278046890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13294-13518:1:exon

MAGTDC_RS05365
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05365
so part of: sequence
location: complement(13507..>13731)
location: region:13507-13731:-1
so has part: feature:13507-13731:-1:exon
subclass of: SO_0000010

79948342
type: Gene
SIO_000068: ncbigene

position:13507:-1
position: 13507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13731:-1
position: 13731
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13507-13731:-1:exon

MAGTDC_RS05365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05365
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: RLIQYVCDALCQTFGKHCLVVCVFKSNWHSEIYLLTNLYHLHGDLKRASILRLTMIIANKSLLTSRYSLCKLNR
SIO_010081: MAGTDC_RS05365
subclass of: SO_0000673
so part of: MAGTDC_RS05365
location: complement(13507..>13731)
location: region:13507-13731:-1
so has part: feature:13507-13731:-1:exon

WP_278046891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13507-13731:-1:exon