Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant24, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant24, whole genome shotgun sequence.
sequence version: NZ_CM008785.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008785.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008785.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 16313
topology: circular
so has quality: SO_0000988
location: 1..16313
location: region:1-16313:1
RO_0002162: 573658

NZ_CM008785
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:16313:1
position: 16313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16313:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant24
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS01095
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01095
pseudo: true
so part of: sequence
location: <1..533
location: region:1-533:1
so has part: feature:1-533:1:exon
subclass of: SO_0000010

79947637
type: Gene
SIO_000068: ncbigene

position:533:1
position: 533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-533:1:exon

MAGTDC_RS01095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01095
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
pseudo: true
codon start: 3
transl table: 4
product: hypothetical protein
SIO_010081: MAGTDC_RS01095
subclass of: SO_0000673
so part of: MAGTDC_RS01095
location: <1..533
location: region:1-533:1
so has part: feature:1-533:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-533:1:exon

MAGTDC_RS01100
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01100
so part of: sequence
location: 693..1115
location: region:693-1115:1
so has part: feature:693-1115:1:exon
subclass of: SO_0000010

79947638
type: Gene
SIO_000068: ncbigene

position:693:1
position: 693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1115:1
position: 1115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:693-1115:1:exon

MAGTDC_RS01100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLKSTQDWLLSLISMFLSSLTDQRWLMFYLTILLLILLTVYKKDNKNGTANNTDRSDGDRREDDEESEGNMEGDEDTDNYADDNDDDYNDDDGNNDTDNNDNDNSDDDNYNDDDGNNDTDNNDNDNSDDDNNKTTKHCKH
SIO_010081: MAGTDC_RS01100
subclass of: SO_0000673
so part of: MAGTDC_RS01100
location: 693..1115
location: region:693-1115:1
so has part: feature:693-1115:1:exon

WP_192572990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:693-1115:1:exon

MAGTDC_RS01105
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01105
old locus tag: magtdc_161
so part of: sequence
location: 1230..2402
location: region:1230-2402:1
so has part: feature:1230-2402:1:exon
subclass of: SO_0000010

79947639
type: Gene
SIO_000068: ncbigene

position:1230:1
position: 1230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2402:1
position: 2402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1230-2402:1:exon

MAGTDC_RS01105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01105
old locus tag: magtdc_161
inference: COORDINATES: protein motif:HMM:NF013237.2
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO process: GO:0019346 - transsulfuration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: PLP-dependent transferase
translation: MEDIKKDIDITRMITTKRKSEFAYTINALNVIYDNLVKDRTLQTKPPSDITRSVTSDSQHWVSSTVHNLSTTIAALEYSDSTILTNSRLTATTLTILCLLSPGDHALIIDSVYYPLKEFCNVLSKLNINIDYFNPRDEYSLKTLLRTNTKLIHLESPCSDTFEVLDIDKICKYVKQRSDKCIISMDNSWATPLIYKPLTHGVDVSICDLTNYLIKQSNTDLTSISTTKTLSHMFIKFKNLVNLTYGNYDLLTILNNINNSIFRLYSRYNPIMKLCRHLSKMKHLCQVFCPASRSSPDNWLWQQNYNLQNNIISIKLNKNSINKCKKFLSNLAVIKTDGVYNDNKTSASLFVIRHRLFGTESTYPIIRLRIGLDDIDNLITDLNNALITTG
SIO_010081: MAGTDC_RS01105
subclass of: SO_0000673
so part of: MAGTDC_RS01105
location: 1230..2402
location: region:1230-2402:1
so has part: feature:1230-2402:1:exon

WP_146656676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1230-2402:1:exon

MAGTDC_RS04335
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04335
so part of: sequence
location: complement(3395..3535)
location: region:3395-3535:-1
so has part: feature:3395-3535:-1:exon
subclass of: SO_0000010

79948155
type: Gene
SIO_000068: ncbigene

position:3395:-1
position: 3395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3535:-1
position: 3535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3395-3535:-1:exon

MAGTDC_RS04335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04335
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLTNDGRVNNKKLVQIVISMNVVETELNELNQYKIWKILSCCIGLV
SIO_010081: MAGTDC_RS04335
subclass of: SO_0000673
so part of: MAGTDC_RS04335
location: complement(3395..3535)
location: region:3395-3535:-1
so has part: feature:3395-3535:-1:exon

WP_192572991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3395-3535:-1:exon

MAGTDC_RS05310
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05310
so part of: sequence
location: 3888..4010
location: region:3888-4010:1
so has part: feature:3888-4010:1:exon
subclass of: SO_0000010

79948331
type: Gene
SIO_000068: ncbigene

position:3888:1
position: 3888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4010:1
position: 4010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3888-4010:1:exon

MAGTDC_RS05310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGNDIVLEKILTTEISDKTNMVPNVVIINPRSKGTGCWHW
SIO_010081: MAGTDC_RS05310
subclass of: SO_0000673
so part of: MAGTDC_RS05310
location: 3888..4010
location: region:3888-4010:1
so has part: feature:3888-4010:1:exon

WP_278046883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3888-4010:1:exon

MAGTDC_RS01110
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01110
so part of: sequence
location: 4369..4695
location: region:4369-4695:1
so has part: feature:4369-4695:1:exon
subclass of: SO_0000010

79947640
type: Gene
SIO_000068: ncbigene

position:4369:1
position: 4369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4695:1
position: 4695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4369-4695:1:exon

MAGTDC_RS01110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDIGEILQQVNHIMLIDTNVQIAIYELELIYKIKVIMVISFNILLNNRITKLFDDDDLILQIPNSCFICYCHKQELFTSDDGVIILDIDIDLLISKQNNLINNKHMFS
SIO_010081: MAGTDC_RS01110
subclass of: SO_0000673
so part of: MAGTDC_RS01110
location: 4369..4695
location: region:4369-4695:1
so has part: feature:4369-4695:1:exon

WP_146656677.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4369-4695:1:exon

MAGTDC_RS04340
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04340
so part of: sequence
location: 5688..5825
location: region:5688-5825:1
so has part: feature:5688-5825:1:exon
subclass of: SO_0000010

79948156
type: Gene
SIO_000068: ncbigene

position:5688:1
position: 5688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5825:1
position: 5825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5688-5825:1:exon

MAGTDC_RS04340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDYILSCTVLNTGFYKDNYNVVINHDKTESSNVWFMMFKVYKLMF
SIO_010081: MAGTDC_RS04340
subclass of: SO_0000673
so part of: MAGTDC_RS04340
location: 5688..5825
location: region:5688-5825:1
so has part: feature:5688-5825:1:exon

WP_192572992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5688-5825:1:exon

MAGTDC_RS04345
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04345
so part of: sequence
location: 6036..6221
location: region:6036-6221:1
so has part: feature:6036-6221:1:exon
subclass of: SO_0000010

79948157
type: Gene
SIO_000068: ncbigene

position:6036:1
position: 6036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6221:1
position: 6221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6036-6221:1:exon

MAGTDC_RS04345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MMALMNTILKTCRTKFHANNNKPMTNQSIDGITHSCLIELNETDTTCCSIDYYSTLILECI
SIO_010081: MAGTDC_RS04345
subclass of: SO_0000673
so part of: MAGTDC_RS04345
location: 6036..6221
location: region:6036-6221:1
so has part: feature:6036-6221:1:exon

WP_192572993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6036-6221:1:exon

MAGTDC_RS01115
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01115
old locus tag: magtdc_162
so part of: sequence
location: 6888..7364
location: region:6888-7364:1
so has part: feature:6888-7364:1:exon
subclass of: SO_0000010

79947641
type: Gene
SIO_000068: ncbigene

position:6888:1
position: 6888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7364:1
position: 7364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6888-7364:1:exon

MAGTDC_RS01115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01115
old locus tag: magtdc_162
inference: COORDINATES: protein motif:HMM:NF014351.2
GO function: GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO process: GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
translation: MLLIGLQKTGKSRIIRSTCCNLKTLYVVTNSINVKDKLFQHIKHRSNNWNIYEESIDLTALIKTNVNTNAIVIIDDISTWLSNILILKSNCYNEIDKLLMLLKTTKKWIVITHELSNTISTNTLNKNFTRLLWNTTQQLVLISNKIYISISGNILRLK
SIO_010081: MAGTDC_RS01115
subclass of: SO_0000673
so part of: MAGTDC_RS01115
location: 6888..7364
location: region:6888-7364:1
so has part: feature:6888-7364:1:exon

WP_146656678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6888-7364:1:exon

MAGTDC_RS04350
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04350
so part of: sequence
location: complement(7646..7822)
location: region:7646-7822:-1
so has part: feature:7646-7822:-1:exon
subclass of: SO_0000010

79948158
type: Gene
SIO_000068: ncbigene

position:7646:-1
position: 7646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7822:-1
position: 7822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7646-7822:-1:exon

MAGTDC_RS04350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04350
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVWSRTSISSSTSHCRATFVNIWSIEYVLILKGGLHCCYRTVGNNVLTICSDHRVLML
SIO_010081: MAGTDC_RS04350
subclass of: SO_0000673
so part of: MAGTDC_RS04350
location: complement(7646..7822)
location: region:7646-7822:-1
so has part: feature:7646-7822:-1:exon

WP_192572994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7646-7822:-1:exon

MAGTDC_RS01120
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01120
so part of: sequence
location: complement(9273..9494)
location: region:9273-9494:-1
so has part: feature:9273-9494:-1:exon
subclass of: SO_0000010

79947642
type: Gene
SIO_000068: ncbigene

position:9273:-1
position: 9273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9494:-1
position: 9494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9273-9494:-1:exon

MAGTDC_RS01120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01120
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLGRVGWSNYIELRLMNSIHDNNWLIEMILIRQWVHVFGSDHINDSYGRCCFIRFEQIMYLQLAFRSIGWYSR
SIO_010081: MAGTDC_RS01120
subclass of: SO_0000673
so part of: MAGTDC_RS01120
location: complement(9273..9494)
location: region:9273-9494:-1
so has part: feature:9273-9494:-1:exon

WP_146656679.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9273-9494:-1:exon

MAGTDC_RS01125
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01125
so part of: sequence
location: 13582..13767
location: region:13582-13767:1
so has part: feature:13582-13767:1:exon
subclass of: SO_0000010

79947643
type: Gene
SIO_000068: ncbigene

position:13582:1
position: 13582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13767:1
position: 13767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13582-13767:1:exon

MAGTDC_RS01125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01125
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVIYLFWLWLNRWWIFRPEFYNVGLINELQGIIGVGNVSVFIRTDNIIGVQVITSTLQTSD
SIO_010081: MAGTDC_RS01125
subclass of: SO_0000673
so part of: MAGTDC_RS01125
location: 13582..13767
location: region:13582-13767:1
so has part: feature:13582-13767:1:exon

WP_192572989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13582-13767:1:exon

MAGTDC_RS05315
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05315
so part of: sequence
location: 14436..14564
location: region:14436-14564:1
so has part: feature:14436-14564:1:exon
subclass of: SO_0000010

79948332
type: Gene
SIO_000068: ncbigene

position:14436:1
position: 14436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14564:1
position: 14564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14436-14564:1:exon

MAGTDC_RS05315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MMLLVNTLVGNDEFRWKTWTRFEVKREYLGRIGGCFSFNKSE
SIO_010081: MAGTDC_RS05315
subclass of: SO_0000673
so part of: MAGTDC_RS05315
location: 14436..14564
location: region:14436-14564:1
so has part: feature:14436-14564:1:exon

WP_278046882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14436-14564:1:exon

MAGTDC_RS05320
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05320
so part of: sequence
location: 14812..14994
location: region:14812-14994:1
so has part: feature:14812-14994:1:exon
subclass of: SO_0000010

79948333
type: Gene
SIO_000068: ncbigene

position:14812:1
position: 14812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14994:1
position: 14994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14812-14994:1:exon

MAGTDC_RS05320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05320
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNTSHITINWHHKIVNFKIWYGKTKIKMKLLVLILGCSNIRLVRCWSLDYCKEIRDSKMT
SIO_010081: MAGTDC_RS05320
subclass of: SO_0000673
so part of: MAGTDC_RS05320
location: 14812..14994
location: region:14812-14994:1
so has part: feature:14812-14994:1:exon

WP_146656681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14812-14994:1:exon

MAGTDC_RS01135
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01135
so part of: sequence
location: 15164..15358
location: region:15164-15358:1
so has part: feature:15164-15358:1:exon
subclass of: SO_0000010

79947644
type: Gene
SIO_000068: ncbigene

position:15164:1
position: 15164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15358:1
position: 15358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15164-15358:1:exon

MAGTDC_RS01135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01135
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVPNTKQLPWWSKNRSVNKILNSYRYYYWNGILIQSECFVIDKVNSFRLDKNEVGRRKRVVSKE
SIO_010081: MAGTDC_RS01135
subclass of: SO_0000673
so part of: MAGTDC_RS01135
location: 15164..15358
location: region:15164-15358:1
so has part: feature:15164-15358:1:exon

WP_146656682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15164-15358:1:exon