Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant22, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant22, whole genome shotgun sequence.
sequence version: NZ_CM008783.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008783.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008783.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 35645
topology: circular
so has quality: SO_0000988
location: 1..35645
location: region:1-35645:1
RO_0002162: 573658

NZ_CM008783
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35645:1
position: 35645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-35645:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant22
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS00945
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00945
old locus tag: magtdc_140
so part of: sequence
location: complement(76..150)
location: region:76-150:-1
so has part: feature:76-150:-1:exon
subclass of: SO_0000663

79947613
type: Gene
SIO_000068: ncbigene

position:76:-1
position: 76
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150:-1
position: 150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76-150:-1:exon

MAGTDC_RS00945
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 573658
locus tag: MAGTDC_RS00945
old locus tag: magtdc_140
product: tRNA-Ile
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(116..118),aa:Ile,seq:cat)
SIO_010081: MAGTDC_RS00945
subclass of: SO_0000673
so part of: MAGTDC_RS00945
location: complement(76..150)
location: region:76-150:-1
so has part: feature:76-150:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:76-150:-1:exon

MAGTDC_RS00950
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00950
old locus tag: magtdc_141
so part of: sequence
location: 600..4361
location: region:600-4361:1
so has part: feature:600-4361:1:exon
subclass of: SO_0000010

79947614
type: Gene
SIO_000068: ncbigene

position:600:1
position: 600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4361:1
position: 4361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:600-4361:1:exon

MAGTDC_RS00950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00950
old locus tag: magtdc_141
inference: COORDINATES: protein motif:HMM:NF012771.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNTRFNFNTNSVNKTPLNHNDLQNRLYKNTLWGCYNNEGIKISKLELILQTLFPVNLKHYSLELIKTSNCIKDEKLTSFGLELNVIRYCLDKDILFVNDQHNLDVLLMDLPRLSKDGILTINGTKKTLITQLIKQSAVLFDRENETISIKDRDIGYLRINGPKIIHNNHESDLFASLLTLKTKHSHIFKGTSETHDVGFYKGTWHRLTWDNTKRTGFKYSSRRSLRCKKTITGYLETGNVIITGAYINVSKTPIVNIGKHITLDRNTALNYSSSITITKSFDVLNVIKHFDEAILEGETEITCEDINNVELTLPGRIFLNDLTKNHLNFGLDQLTKKDLILILNEILINRNGFKHVDCDIRMIRGSGEVIIDFIKKTLEPILSVNDPNVQTDDDMIIDKLFDSVKKIQSDVDKFFVSSSLCQYLDQVNSLSELSHKGKLTCLGEGGLTSQNVEITIRDTKQWHLAKICPIESPEGQNIGLVTTLSAYADVDVNGYISTGYYKTYNGLINRNVIYLNHFESKRLNVGLSCNRIQKKWTMCLNWNKIKVTDRSVIDLSLVSDVQMFSHAVRLIPFLGHNDPTRALMAANMLKQAIPPLNSRPPLVGTGEEYAVMRDTGHNVVARNNGIVINVDSKRIVIHEPKDQKQRVYILPQSRKSNQDMCQRIRTVVNPGQRLKQGDVIAECQSSCDGEMSLGANLLVAFMCWEGYNFEDSVIISNNVINKGIFKSLHIINLKTKVKQTPSGNEWLSPNITDVPMKHRRCLDSNGIVKVGSNVHEGDVLVGKLVPRSDAKQKKEEIKEICGDELSSDEEINEDNGMITNMEDGDYTFNVGKDGNDEFSTELVHNTSLIVPKGIEHATVLEVERSSDGDKKYQDKDLEDYIRCYNVVTKKYIRRCCILLQISNIKRLFTTNPLSSDNKVIQDGLNLLHKKYLSYLNKLEVNMLSKFNNRLTNENQSDGSKILETIKVKLLVHRSIKVGDKICGRHGNKGVISEIVPKEDMPFMADGTPIDIILNPLGVPSRMNIGQLLETTFGLISYKFGLEFKNILNMYYKTNDDRILERVIPKLTELYPNINKLSKNMILILLSELSQGVKISCPLFEFPFESCLKDFNDRLLINSNRKIQLYDGKTGLPFISTTNVGIIYIFKLNHLVDDKIHARSTGPYSAVTQQPLKGRNNLGGQRLGEMEVWALQSYGVAYFLNESLSAKCDDIMARHEIKENFLEERPTHKLYQTEGMAVLVKELFSMCIEIEATK
SIO_010081: MAGTDC_RS00950
subclass of: SO_0000673
so part of: MAGTDC_RS00950
location: 600..4361
location: region:600-4361:1
so has part: feature:600-4361:1:exon

WP_146656649.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:600-4361:1:exon

MAGTDC_RS00955
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00955
old locus tag: magtdc_142
so part of: sequence
location: 4367..8392
location: region:4367-8392:1
so has part: feature:4367-8392:1:exon
subclass of: SO_0000010

79947615
type: Gene
SIO_000068: ncbigene

position:4367:1
position: 4367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8392:1
position: 8392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4367-8392:1:exon

MAGTDC_RS00955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00955
old locus tag: magtdc_142
inference: COORDINATES: protein motif:HMM:NF016859.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MMSIFNKNISNLRFKITSPETILSWSYGEICNADTYDDNGKPIVGGLFCPKVFGLRRKNECLCPTPNLNNKMICQTCGIYLDTNRLQARSRFGHINLSTPVIHTLFYKPTPNILAELLNMDVEIVQDIIECKLHVIIWSDLSDYRNGQVISTETYRNMWIRNDRCSVASGGQAIMELLSRVQLNKIKTSLTKEIQRTKSEELLDKIKDRLEMVEGFISNNIRLEWLVIRILPVLPAELRPMMVLDDDTLANSDLNVLYKHIITVNNNQLIKTNKIKSNDVNEFDSYIEGLVSLQKAVDDLIDNSSNVDNPNKYNTPALKSLTEILKGKQGRFRHNILGKRVDYSGRSVIVPGPNLSINECSIPRSMAVDLFKPFIYSKLMLKSNLNNKKAIKQVLETDIYLTYKILEEVVSYCPVLLNRAPTLHKLSMRSFWVKLTNEKVIRLHPLVCSGFNADFDGDQMAVHVPLSFNARIEATMLLMADNNVMHPAHGDPCILPSQDMILGLYYMSLTSPEHKDICLSSYKEVHKILFLNKINLHAKIKFKTVVNGKITEILSTPGRLLISELVPSECNFLYEWSYPEFSKQLIFDIIKLVNDRCGSKQMTTFCERLMRLGFKYATKSGMSLSDSDLVNLSYKKLLLRDIRSRITTSWSKIDNKQEIPMPLSTWPKVLDAVNNNINLEITGYSLKQTPIQMIINSGARGTLSQIQQLIGSRGYIVGFEGKTCRLPILNAYNEGLSLIQFFCCTFSSRRGLIDTTLKTASSGYLTRKLVESTREWVVSEDDCNTETGLHVKPIIDLEFIKNRLIGRFIAKPILTNKKTIVQRNELITEDNIYKILINCNDGLWIRSPLTCQARFGICKLCYGIELGSGNMVQHGDSVGVLAAQSIGEPGTQLTLRTFHGLTNIESKTNIKTIKNCLISPFSGIIKTKNISCVVSESNDIIVVNSNSSLSIIKDGIEIWNYKLPRGTHLLVSNDKHVEPEEILCFNCIRSTSLLSLVSGNSFFKNLVYYLNIKKEIYDITKRKKTNVKPDVVKDKMSLIGLDVGRMKRLHYVTVNGKNKFKISPNERISLFDEILEVTIEDEDEIDMTLTEGFERLSKLFNNNTDEDNSSIISPIDGILKHGTDSNGNRSFVIDPININKQPVVYSDLDVKLFIKDNKIIKQGQIILHGDHDLSNYAEVYGFNDLFNYFVGIVQEIYGNQGVNVNSKHIEMVLRQMTNTISISDPGNSPLKVGCCYNWQDVARINYYIKTLKRKVALGDRQIVGITETCMNQRSILSAISFQGAIKSIIKAIISNNNYEVTNIKDKIMLGKVPLIGTGFINERKLIEDGILNKNGSVNRKI
SIO_010081: MAGTDC_RS00955
subclass of: SO_0000673
so part of: MAGTDC_RS00955
location: 4367..8392
location: region:4367-8392:1
so has part: feature:4367-8392:1:exon

WP_192572978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4367-8392:1:exon

MAGTDC_RS04305
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04305
so part of: sequence
location: 9027..9179
location: region:9027-9179:1
so has part: feature:9027-9179:1:exon
subclass of: SO_0000010

79948149
type: Gene
SIO_000068: ncbigene

position:9027:1
position: 9027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9179:1
position: 9179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9027-9179:1:exon

MAGTDC_RS04305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04305
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGLGLRWMVDATKQHSGGSNMVGLTWEIIDRCYKKEFFVQTKRNHDTTQL
SIO_010081: MAGTDC_RS04305
subclass of: SO_0000673
so part of: MAGTDC_RS04305
location: 9027..9179
location: region:9027-9179:1
so has part: feature:9027-9179:1:exon

WP_192572980.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9027-9179:1:exon

MAGTDC_RS00970
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00970
so part of: sequence
location: 9324..9560
location: region:9324-9560:1
so has part: feature:9324-9560:1:exon
subclass of: SO_0000010

79947616
type: Gene
SIO_000068: ncbigene

position:9324:1
position: 9324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9560:1
position: 9560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9324-9560:1:exon

MAGTDC_RS00970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00970
inference: COORDINATES: protein motif:HMM:NF012239.2
GO function: GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: GTP-binding protein
translation: MVEVHGGNINMNWMIQEQEHGITITSTVSSTSWKTDLFVDVRFNLIDTSDHINFTTEIEKDLRILDGIVIILDGSVKC
SIO_010081: MAGTDC_RS00970
subclass of: SO_0000673
so part of: MAGTDC_RS00970
location: 9324..9560
location: region:9324-9560:1
so has part: feature:9324-9560:1:exon

WP_278046876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9324-9560:1:exon

MAGTDC_RS00975
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00975
so part of: sequence
location: 9765..10079
location: region:9765-10079:1
so has part: feature:9765-10079:1:exon
subclass of: SO_0000010

79947617
type: Gene
SIO_000068: ncbigene

position:9765:1
position: 9765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10079:1
position: 10079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9765-10079:1:exon

MAGTDC_RS00975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00975
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKVVYQNQDDKDLTCSVINITKEYKNVTNEQRTLLIDSIIESDHNQTTTCLRCNKLDNHSIISLIRLTTLSGKILPIMCGSTLNNKTIQPVLDIISQLFTISRW
SIO_010081: MAGTDC_RS00975
subclass of: SO_0000673
so part of: MAGTDC_RS00975
location: 9765..10079
location: region:9765-10079:1
so has part: feature:9765-10079:1:exon

WP_146656654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9765-10079:1:exon

MAGTDC_RS04310
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04310
so part of: sequence
location: 10172..10321
location: region:10172-10321:1
so has part: feature:10172-10321:1:exon
subclass of: SO_0000010

79948150
type: Gene
SIO_000068: ncbigene

position:10172:1
position: 10172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10321:1
position: 10321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10172-10321:1:exon

MAGTDC_RS04310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSDIYSDFSMFIRIYSGGIKQWEVIYNVRNTSEQKITKLLKLYANLITG
SIO_010081: MAGTDC_RS04310
subclass of: SO_0000673
so part of: MAGTDC_RS04310
location: 10172..10321
location: region:10172-10321:1
so has part: feature:10172-10321:1:exon

WP_192572982.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10172-10321:1:exon

MAGTDC_RS00980
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00980
old locus tag: magtdc_143
so part of: sequence
location: 11028..12182
location: region:11028-12182:1
so has part: feature:11028-12182:1:exon
subclass of: SO_0000010

79947618
type: Gene
SIO_000068: ncbigene

position:11028:1
position: 11028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12182:1
position: 12182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11028-12182:1:exon

MAGTDC_RS00980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00980
old locus tag: magtdc_143
inference: COORDINATES: protein motif:HMM:NF012263.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: cytochrome b N-terminal domain-containing protein
translation: MIDLTKTMINYLIKFQVPKHANWLYTTGFSLMFIFILQIVSGISIAIHYKPSTRLAFLSIHRTERLFKYGWLVRSLHVCGSSALFLLLYLHIFKGIYYKAYSGSKKIIWLTGSIIHLIMILIGFFGSVLSWSQMSYWAAVVITNFIGSIPIVGKPLRLILLGRYSVGASTLRRFFVFHCIFPFICLFFIIIHLLLVHIKGQTSPIANRLPISKSFEDLYPNFIAKDIIACIIVLFVMYVLCLIYPNIILNKLSYIPADYYSTPTDIEPEWYFLPYYSILKTFESKMLGITSITVLLSSLVLIPYIYNKELPNITTRSYRLHTITAFISLIFLGLTGKYRYTKLISKLSKACVLWYLGFISLPLVIRIISFINKNHKRYWILASK
SIO_010081: MAGTDC_RS00980
subclass of: SO_0000673
so part of: MAGTDC_RS00980
location: 11028..12182
location: region:11028-12182:1
so has part: feature:11028-12182:1:exon

WP_146656655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11028-12182:1:exon

MAGTDC_RS00985
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00985
old locus tag: magtdc_144
so part of: sequence
location: 12161..12802
location: region:12161-12802:1
so has part: feature:12161-12802:1:exon
subclass of: SO_0000010

79947619
type: Gene
SIO_000068: ncbigene

position:12161:1
position: 12161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12802:1
position: 12802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12161-12802:1:exon

MAGTDC_RS00985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00985
old locus tag: magtdc_144
inference: COORDINATES: protein motif:HMM:NF014247.2
GO function: GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: cytochrome c1
translation: MDISFKIGQIKRGFNVFRQICINCHSLKLFKLMDLLKLGYTHKQAALLVKKYRIIDYFKLPYKSVIQAKRFNNGSLPPDLSLVTKYRSVQWIYDLLTGYGNTIIRNESNLYQNKGLESGWTAMRPPLAYKCVKDNFYAPHTIHQYSRDVIGFLNWVSEPWLNIRQRITIPILSSLFITGLILTNSLIKNNNKTIWNYIINNHHSDHETDNNKL
SIO_010081: MAGTDC_RS00985
subclass of: SO_0000673
so part of: MAGTDC_RS00985
location: 12161..12802
location: region:12161-12802:1
so has part: feature:12161-12802:1:exon

WP_146656656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12161-12802:1:exon

MAGTDC_RS00990
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsD
locus tag: MAGTDC_RS00990
old locus tag: magtdc_145
so part of: sequence
location: 13102..13725
location: region:13102-13725:1
so has part: feature:13102-13725:1:exon
subclass of: SO_0000010

79947620
type: Gene
SIO_000068: ncbigene

position:13102:1
position: 13102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13725:1
position: 13725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13102-13725:1:exon

MAGTDC_RS00990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsD
locus tag: MAGTDC_RS00990
old locus tag: magtdc_145
inference: COORDINATES: protein motif:HMM:NF003717.0
GO component: GO:0015935 - small ribosomal subunit [Evidence IEA]
GO function: GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S4
translation: MNRRKVPKFKFDRRIGENIWNSRRSSLNKRNYGSGQHGNKPKKRLTDYGIRLLAKQKMKIYYSNLTESKFKKVYIKALKLNGNVALNIVRLLEMRLDVLVHRAKLAPSFRAARQLINHGYILVNNKEVNICSHECNVGDVFRIRPKCINSMLIKQSILNSESDVPKHIECCYRYLTFKLIKTPKYTNKTYPVTMNPESVVEFYSGRY
SIO_010081: MAGTDC_RS00990
subclass of: SO_0000673
so part of: MAGTDC_RS00990
location: 13102..13725
location: region:13102-13725:1
so has part: feature:13102-13725:1:exon

WP_146656657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13102-13725:1:exon

MAGTDC_RS00995
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00995
old locus tag: magtdc_147
so part of: sequence
location: complement(14194..14733)
location: region:14194-14733:-1
so has part: feature:14194-14733:-1:exon
subclass of: SO_0000010

79947621
type: Gene
SIO_000068: ncbigene

position:14194:-1
position: 14194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14733:-1
position: 14733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14194-14733:-1:exon

MAGTDC_RS00995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00995
old locus tag: magtdc_147
inference: COORDINATES: protein motif:HMM:NF016337.2
GO function: GO:0005507 - copper ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: cytochrome c oxidase assembly protein
translation: MIKMSSISSGLIYGISIITFVSMGVFCFLMAKLYKITCARFGLAGIPKKGINLNKKLHHKPVQIEFITQIDKTLPCVFECSINRIILIPGEVIKVNYKLRNKINNYFVGEAIYNITPFVASKYFNKLQCFCYNKMIIPPCSNIVLPLVFYINPNITFDEGTKNIEKITLTYILNNMGKW
SIO_010081: MAGTDC_RS00995
subclass of: SO_0000673
so part of: MAGTDC_RS00995
location: complement(14194..14733)
location: region:14194-14733:-1
so has part: feature:14194-14733:-1:exon

WP_146656658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14194-14733:-1:exon

MAGTDC_RS01000
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01000
old locus tag: magtdc_148
so part of: sequence
location: complement(14727..16364)
location: region:14727-16364:-1
so has part: feature:14727-16364:-1:exon
subclass of: SO_0000010

79947622
type: Gene
SIO_000068: ncbigene

position:14727:-1
position: 14727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16364:-1
position: 16364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14727-16364:-1:exon

MAGTDC_RS01000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01000
old locus tag: magtdc_148
inference: COORDINATES: protein motif:HMM:NF012343.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO process: GO:0009060 - aerobic respiration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: cbb3-type cytochrome c oxidase subunit I
translation: MDHKFNKLTDYIEDNIFRLILNIYDTVVFVNDWLRKNTINVINSLMLWDHVRIGRYYIFFSVIFGTIAAIISILMRTELKHPGIQVYNKIARLIYKDGDIEDKAKHLYNSSMTAHGLIMIFYMLMPMLINGMGSLLIPKLVMSNDLASKVASLCSFFILMLSGLVAVASMLTKGTLNDYGSATGWTLYPPLSNANYHAGRSVDLVIFAIILACISSVITSSNFISTIITKKDRRVRLVKMSLIAWALLISSLLLIITMPVLISAVTMLFLDRRYNTVFYESQAGSDPTMFQHLFWFFGHPEVYALILPAFGIVSEIISKFSGKPIFGRSGMILSMMSIALIGMVVWAHHMYTVGLTFKSIKYFVISTMAVAVPTGIKVFSWLGTMWGGNIRLKSPMIWALGFVILFVAGGLTGIQLANAALSKALHDTYYVVAHFHYVLSVASIFAAMAGWYYWFHKIFERTYSENLCILHAVITFIASNITFLPQHFLGLAGMPRRSIDYIEAYSGWNKVSTYGAYFGIIGILLFFYIIIDSKIRGKTCIKSPW
SIO_010081: MAGTDC_RS01000
subclass of: SO_0000673
so part of: MAGTDC_RS01000
location: complement(14727..16364)
location: region:14727-16364:-1
so has part: feature:14727-16364:-1:exon

WP_146656659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14727-16364:-1:exon

MAGTDC_RS01005
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: coxB
locus tag: MAGTDC_RS01005
old locus tag: magtdc_149
so part of: sequence
location: complement(16354..17133)
location: region:16354-17133:-1
so has part: feature:16354-17133:-1:exon
subclass of: SO_0000010

79947623
type: Gene
SIO_000068: ncbigene

position:16354:-1
position: 16354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17133:-1
position: 17133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16354-17133:-1:exon

MAGTDC_RS01005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: coxB
locus tag: MAGTDC_RS01005
old locus tag: magtdc_149
EC number: 7.1.1.9
inference: COORDINATES: protein motif:HMM:NF012344.2
GO function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: cytochrome c oxidase subunit II
translation: MSIFVGKPLNWQTGLQRSATPVMKQINQLMSFTNVLLSPILVFVVIAIIILCYKNNGNTVISQTNNNLPLEIIWTIIPIMILSSICEPSFKALKYQMSQKRLPFITVKVTAHQWYWNYEYNLIGNKFNYNSNILKQQHRIGFKKTNLGLYPELLATDYELVVPTRRVIRILITSDDVIHGFAVPSFGLKIDAIPGKLNDAWIKVSTPGIYYGQCSEFCGKDHAFMPIAVRGVSQERFNNWLKVAKSDLDKAFRIMRHGS
SIO_010081: MAGTDC_RS01005
subclass of: SO_0000673
so part of: MAGTDC_RS01005
location: complement(16354..17133)
location: region:16354-17133:-1
so has part: feature:16354-17133:-1:exon

WP_146656660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16354-17133:-1:exon

MAGTDC_RS01010
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01010
old locus tag: magtdc_150
so part of: sequence
location: complement(18181..18251)
location: region:18181-18251:-1
so has part: feature:18181-18251:-1:exon
subclass of: SO_0000663

79947624
type: Gene
SIO_000068: ncbigene

position:18181:-1
position: 18181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18251:-1
position: 18251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18181-18251:-1:exon

MAGTDC_RS01010
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 573658
locus tag: MAGTDC_RS01010
old locus tag: magtdc_150
product: tRNA-His
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(18217..18219),aa:His,seq:gtg)
SIO_010081: MAGTDC_RS01010
subclass of: SO_0000673
so part of: MAGTDC_RS01010
location: complement(18181..18251)
location: region:18181-18251:-1
so has part: feature:18181-18251:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18181-18251:-1:exon

MAGTDC_RS01015
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01015
old locus tag: magtdc_151
so part of: sequence
location: complement(18269..18892)
location: region:18269-18892:-1
so has part: feature:18269-18892:-1:exon
subclass of: SO_0000010

79947625
type: Gene
SIO_000068: ncbigene

position:18269:-1
position: 18269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18892:-1
position: 18892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18269-18892:-1:exon

MAGTDC_RS01015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01015
old locus tag: magtdc_151
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKYNNNKINSLNHNFDWLKIKLWNNVVLLSIGLDSLNVIIDKIKLSVFSNYVVLGICFKKSITKDVILKWYVKSTTDSIELLVFKSRIREFIYETFIDKCEFMKIKLNDLLYVSIFDSNETIVNLDTKKLFRCLHETKGVSTTMIVNQVNFQRNLKYNLNNKVKEYINQVNVVTDLTEQYETMKKRLLVEVNMPRLVIEKWKTDINW
SIO_010081: MAGTDC_RS01015
subclass of: SO_0000673
so part of: MAGTDC_RS01015
location: complement(18269..18892)
location: region:18269-18892:-1
so has part: feature:18269-18892:-1:exon

WP_192572977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18269-18892:-1:exon

MAGTDC_RS01020
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01020
old locus tag: magtdc_152
so part of: sequence
location: 22924..25482
location: region:22924-25482:1
so has part: feature:22924-25482:1:exon
subclass of: SO_0000010

79947626
type: Gene
SIO_000068: ncbigene

position:22924:1
position: 22924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25482:1
position: 25482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22924-25482:1:exon

MAGTDC_RS01020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01020
old locus tag: magtdc_152
inference: COORDINATES: protein motif:HMM:NF012361.2
GO function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: class I tRNA ligase family protein
translation: MFNINMLQKQENVIDVRYTCYQRSNSGCNFVGMLNRKRFRVLDGPPFANGELHLGHMVNKILKDICIKANEELGKSSSIKHNWDCHGLPIELQVIAKTKNRRYLSFLCKIYSLNWAITQALQHKMFGIRCYKSQTVELCTAQKMITDRIYNLVKTGIIMFGKKYSAWSITDNSSIPDIDITDSMVDSFEGEVCGVISKRRQVKITSTPTLLELLVNFFVPRFRMLGSRIQVRNCMLWSLPWGTYVNVSVNGLNFKRLEHGSILLLERNKYDQSWLYGPIPAEVMTTFNVFNVFNQRNMPIVVDFGTKTSIVDVTNKLNRFVRLTGYKRNFLTYNNKYFKKLTIDVITNCLVGQKHVINKLIACSLIHNCVEVNKRCLRSTRSNSLVINCVSPQWYIKLDYNKKMAIEKIINYIRFRPQWHKELIVKLIWTRADWIVSRQRVWGTPICLVRGKFNKILYDKNLFLRLWDLFEKEMGSYWSEIKILYDGYNRFNWSKVNDVLDVWFDAGMVYKLRNGRLPWDVVIEGVDQHRGWFQTLLIISTILEDKMPIRLLITHPFALNIDFKKMSKSIVGISVNEIINNDHNVSRGWVSGFGLSENRIIEGNWSLKMVEMLYRIDNVIKWALNVMEPEFELAPGLLRQIDRFILHKLVIWNNKIRYLYDNCLYYDILNLIGGICKDISSDYFELSKRILYCQFRYSAKRMNCLYVINCWTTQICKWLNPILPTRYKNIFDQLKIYNCVIWNLPSNWFNSMVALQFELINVIKGVVNEVLFDKDLIKNKLVVVTIIVSDVSKLKLFKNISSNDISESIKLNILYSKKIMESGDVEICGLVWIKIGVKYQNFCNRCRRLVNR
SIO_010081: MAGTDC_RS01020
subclass of: SO_0000673
so part of: MAGTDC_RS01020
location: 22924..25482
location: region:22924-25482:1
so has part: feature:22924-25482:1:exon

WP_146656662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22924-25482:1:exon

MAGTDC_RS01025
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01025
old locus tag: magtdc_153
so part of: sequence
location: complement(25472..26419)
location: region:25472-26419:-1
so has part: feature:25472-26419:-1:exon
subclass of: SO_0000010

79947627
type: Gene
SIO_000068: ncbigene

position:25472:-1
position: 25472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26419:-1
position: 26419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25472-26419:-1:exon

MAGTDC_RS01025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01025
old locus tag: magtdc_153
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNNESINPTTENIYTYRNILTLPCLDSRSWCIRLKYGMDYSFKIRTFLCLEVVNKRLELKQVKEILRKRYQLFRDSTNNIILRKISWTESLGRSVLRLNNLKQTKLLVRTLSVIKFTLTSKLIKSKNLTNIFKYERSYKVISALTSKFNLNVHKFIFNINLHFNSRSIVIYNDVNASEFKKHHFVGLIINHLNKIRKHKITSLRYSYYLIVNRLSNICLIGTDLNLIVLTTKFIELLIKVQLKTTKLLKTLSKPELFLEWRNISMLNYIYLNYLLSFTKIKSDHNHYALINFNIFIINSLKHVPNVHLKSFTSIY
SIO_010081: MAGTDC_RS01025
subclass of: SO_0000673
so part of: MAGTDC_RS01025
location: complement(25472..26419)
location: region:25472-26419:-1
so has part: feature:25472-26419:-1:exon

WP_146656663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25472-26419:-1:exon

MAGTDC_RS01030
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01030
so part of: sequence
location: complement(27523..27669)
location: region:27523-27669:-1
so has part: feature:27523-27669:-1:exon
subclass of: SO_0000010

79947628
type: Gene
SIO_000068: ncbigene

position:27523:-1
position: 27523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27669:-1
position: 27669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27523-27669:-1:exon

MAGTDC_RS01030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01030
inference: COORDINATES: protein motif:HMM:NF013237.2
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO process: GO:0019346 - transsulfuration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: PLP-dependent transferase
translation: MDNSWATPLISKPVIQGVDISICDLTKYITGCSDVVLGSIFTTKKIFD
SIO_010081: MAGTDC_RS01030
subclass of: SO_0000673
so part of: MAGTDC_RS01030
location: complement(27523..27669)
location: region:27523-27669:-1
so has part: feature:27523-27669:-1:exon

WP_146656664.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27523-27669:-1:exon

MAGTDC_RS01035
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01035
so part of: sequence
location: complement(28409..28846)
location: region:28409-28846:-1
so has part: feature:28409-28846:-1:exon
subclass of: SO_0000010

79947629
type: Gene
SIO_000068: ncbigene

position:28409:-1
position: 28409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28846:-1
position: 28846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28409-28846:-1:exon

MAGTDC_RS01035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIRTALIKEYTLWCEDLSHIRNIISKWFIRITSISLTNILIRLIYGIFVCWWYVNYKLKPFYRIIRRLKRKTKKVIRWTWKKIKIILTPISILLYSLTDYRWLTFYIIVLAKLFDNLCKREDEREYYENYYENDEEDYENKDEKK
SIO_010081: MAGTDC_RS01035
subclass of: SO_0000673
so part of: MAGTDC_RS01035
location: complement(28409..28846)
location: region:28409-28846:-1
so has part: feature:28409-28846:-1:exon

WP_146656665.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28409-28846:-1:exon

MAGTDC_RS01040
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01040
old locus tag: magtdc_154
so part of: sequence
location: 29736..30038
location: region:29736-30038:1
so has part: feature:29736-30038:1:exon
subclass of: SO_0000010

79947630
type: Gene
SIO_000068: ncbigene

position:29736:1
position: 29736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30038:1
position: 30038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29736-30038:1:exon

MAGTDC_RS01040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS01040
old locus tag: magtdc_154
inference: COORDINATES: protein motif:HMM:NF013025.2
GO component: GO:0005840 - ribosome [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: bL21 family ribosomal protein
translation: MFIQLNNNQYRISRNMLIRLRTDGVVNHRNVVVAKVLTFKCGNDLIYDDGNNWLALGKVIGSFVDVGCLCCKFKRRKGYKRTYGYRNVITMVCFTKIIRL
SIO_010081: MAGTDC_RS01040
subclass of: SO_0000673
so part of: MAGTDC_RS01040
location: 29736..30038
location: region:29736-30038:1
so has part: feature:29736-30038:1:exon

WP_146656666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29736-30038:1:exon

MAGTDC_RS01045
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01045
old locus tag: magtdc_156
so part of: sequence
location: complement(30490..33199)
location: region:30490-33199:-1
so has part: feature:30490-33199:-1:exon
subclass of: SO_0000573

79947631
type: Gene
SIO_000068: ncbigene

position:30490:-1
position: 30490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33199:-1
position: 33199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30490-33199:-1:exon

MAGTDC_RS01045
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS01045
old locus tag: magtdc_156
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS01045
subclass of: SO_0000673
so part of: MAGTDC_RS01045
location: complement(30490..33199)
location: region:30490-33199:-1
so has part: feature:30490-33199:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30490-33199:-1:exon

MAGTDC_RS01050
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS01050
old locus tag: magtdc_155
so part of: sequence
location: complement(33529..35099)
location: region:33529-35099:-1
so has part: feature:33529-35099:-1:exon
subclass of: SO_0000573

79947632
type: Gene
SIO_000068: ncbigene

position:33529:-1
position: 33529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35099:-1
position: 35099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33529-35099:-1:exon

MAGTDC_RS01050
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS01050
old locus tag: magtdc_155
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS01050
subclass of: SO_0000673
so part of: MAGTDC_RS01050
location: complement(33529..35099)
location: region:33529-35099:-1
so has part: feature:33529-35099:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33529-35099:-1:exon