Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant2, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant2, whole genome shotgun sequence.
sequence version: NZ_CM008780.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008780.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008780.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 54074
topology: circular
so has quality: SO_0000988
location: 1..54074
location: region:1-54074:1
RO_0002162: 573658

NZ_CM008780
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54074:1
position: 54074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-54074:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant2
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS04230
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04230
so part of: sequence
location: 865..1011
location: region:865-1011:1
so has part: feature:865-1011:1:exon
subclass of: SO_0000010

79948136
type: Gene
SIO_000068: ncbigene

position:865:1
position: 865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1011:1
position: 1011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:865-1011:1:exon

MAGTDC_RS04230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04230
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGVWFLMFNFIIGNSRCSFLLVSVWFSTDDVMCFGLLLVLVGDLSVIG
SIO_010081: MAGTDC_RS04230
subclass of: SO_0000673
so part of: MAGTDC_RS04230
location: 865..1011
location: region:865-1011:1
so has part: feature:865-1011:1:exon

WP_192572953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:865-1011:1:exon

MAGTDC_RS05230
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05230
so part of: sequence
location: 2011..2133
location: region:2011-2133:1
so has part: feature:2011-2133:1:exon
subclass of: SO_0000010

79948315
type: Gene
SIO_000068: ncbigene

position:2011:1
position: 2011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2133:1
position: 2133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2011-2133:1:exon

MAGTDC_RS05230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05230
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MMLLGRCLTRMLRFDDNLSMVCFINVCLYCLIIVVHDVFD
SIO_010081: MAGTDC_RS05230
subclass of: SO_0000673
so part of: MAGTDC_RS05230
location: 2011..2133
location: region:2011-2133:1
so has part: feature:2011-2133:1:exon

WP_278046864.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2011-2133:1:exon

MAGTDC_RS00730
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00730
old locus tag: magtdc_16
so part of: sequence
location: 3064..4640
location: region:3064-4640:1
so has part: feature:3064-4640:1:exon
subclass of: SO_0000573

79947581
type: Gene
SIO_000068: ncbigene

position:3064:1
position: 3064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4640:1
position: 4640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3064-4640:1:exon

MAGTDC_RS00730
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS00730
old locus tag: magtdc_16
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS00730
subclass of: SO_0000673
so part of: MAGTDC_RS00730
location: 3064..4640
location: region:3064-4640:1
so has part: feature:3064-4640:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3064-4640:1:exon

MAGTDC_RS00735
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00735
old locus tag: magtdc_17
so part of: sequence
location: 5000..7714
location: region:5000-7714:1
so has part: feature:5000-7714:1:exon
subclass of: SO_0000573

79947582
type: Gene
SIO_000068: ncbigene

position:5000:1
position: 5000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7714:1
position: 7714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5000-7714:1:exon

MAGTDC_RS00735
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS00735
old locus tag: magtdc_17
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS00735
subclass of: SO_0000673
so part of: MAGTDC_RS00735
location: 5000..7714
location: region:5000-7714:1
so has part: feature:5000-7714:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5000-7714:1:exon

MAGTDC_RS04235
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04235
so part of: sequence
location: 12957..13094
location: region:12957-13094:1
so has part: feature:12957-13094:1:exon
subclass of: SO_0000010

79948137
type: Gene
SIO_000068: ncbigene

position:12957:1
position: 12957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13094:1
position: 13094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12957-13094:1:exon

MAGTDC_RS04235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVRITIRYESKKLKCEEKKNISDCERIIDEVVVVEFWEQNLILIN
SIO_010081: MAGTDC_RS04235
subclass of: SO_0000673
so part of: MAGTDC_RS04235
location: 12957..13094
location: region:12957-13094:1
so has part: feature:12957-13094:1:exon

WP_192572954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12957-13094:1:exon

MAGTDC_RS00755
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsK
locus tag: MAGTDC_RS00755
so part of: sequence
location: 23595..23873
location: region:23595-23873:1
so has part: feature:23595-23873:1:exon
subclass of: SO_0000010

79947583
type: Gene
SIO_000068: ncbigene

position:23595:1
position: 23595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23873:1
position: 23873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23595-23873:1:exon

MAGTDC_RS00755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsK
locus tag: MAGTDC_RS00755
inference: COORDINATES: protein motif:HMM:NF012628.2
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S11
translation: MLFWLKKKCDIMEFYKWAEILKKRKIITVTIQMTIETILKTLIIMNIKNIQVEIKGIESNRDVMLRILQSSILNIISIRGVTTKFHNGCKKL
SIO_010081: MAGTDC_RS00755
subclass of: SO_0000673
so part of: MAGTDC_RS00755
location: 23595..23873
location: region:23595-23873:1
so has part: feature:23595-23873:1:exon

WP_146656612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23595-23873:1:exon

MAGTDC_RS04240
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04240
so part of: sequence
location: 24417..24563
location: region:24417-24563:1
so has part: feature:24417-24563:1:exon
subclass of: SO_0000010

79948138
type: Gene
SIO_000068: ncbigene

position:24417:1
position: 24417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24563:1
position: 24563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24417-24563:1:exon

MAGTDC_RS04240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVRYIFNEKKKKMNYAIESNWSVGNIKGYVRMLYFSEMETYNRIKGYY
SIO_010081: MAGTDC_RS04240
subclass of: SO_0000673
so part of: MAGTDC_RS04240
location: 24417..24563
location: region:24417-24563:1
so has part: feature:24417-24563:1:exon

WP_192572955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24417-24563:1:exon

MAGTDC_RS00765
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: hisD
locus tag: MAGTDC_RS00765
old locus tag: magtdc_18
so part of: sequence
location: 25844..27142
location: region:25844-27142:1
so has part: feature:25844-27142:1:exon
subclass of: SO_0000010

79947584
type: Gene
SIO_000068: ncbigene

position:25844:1
position: 25844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27142:1
position: 27142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25844-27142:1:exon

MAGTDC_RS00765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: hisD
locus tag: MAGTDC_RS00765
old locus tag: magtdc_18
EC number: 1.1.1.23
inference: COORDINATES: protein motif:HMM:NF013013.2
GO function: GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: histidinol dehydrogenase
translation: MCLRLRSDSPLFDKFIDGIIADRTLNTQHVDDLIDRMEELISKYSDKALMAYNKRLDNVTSRLLRIKVEHDVRGVDLRVLFEIKTLYDRILRYHSSQLIRDIFYVDKEGVILGSVWKPLSSIGIYVPCEETPCISSMFMSAIPARLAGIKHIYVATPYHKIKDKRLFMACASICGVECIYTFGGPQAIIAMAIGTETVKKVDKITGSGNVYIIAAKKKMFGRVGIDGLAGPSESVIVADKSSDTQQVSVDLAAQLERDKSALAVLITKTPKKASAVRSNINALMKLVPLDSNIRHSWSNYGLTIVCKSSTSLYNTVKKISPEHLHLNTSNAFEMMKWIHFAGSIFIGRYSPITVGDYAAGCNHVFTTNIIPRSPSGLSVLDFMTRKSVTCLPTLGSLRSISTPCIELALKANMDLHALSIGCRLHAVTNVGR
SIO_010081: MAGTDC_RS00765
subclass of: SO_0000673
so part of: MAGTDC_RS00765
location: 25844..27142
location: region:25844-27142:1
so has part: feature:25844-27142:1:exon

WP_192572956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25844-27142:1:exon

MAGTDC_RS05235
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05235
so part of: sequence
location: 32100..32237
location: region:32100-32237:1
so has part: feature:32100-32237:1:exon
subclass of: SO_0000010

79948316
type: Gene
SIO_000068: ncbigene

position:32100:1
position: 32100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32237:1
position: 32237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32100-32237:1:exon

MAGTDC_RS05235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIGENKDNNMTITFVGSGIDEMVLMQVLLLIKDLLSTYIDILLVE
SIO_010081: MAGTDC_RS05235
subclass of: SO_0000673
so part of: MAGTDC_RS05235
location: 32100..32237
location: region:32100-32237:1
so has part: feature:32100-32237:1:exon

WP_278046862.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32100-32237:1:exon

MAGTDC_RS00770
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00770
so part of: sequence
location: 32380..32754
location: region:32380-32754:1
so has part: feature:32380-32754:1:exon
subclass of: SO_0000010

79947585
type: Gene
SIO_000068: ncbigene

position:32380:1
position: 32380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32754:1
position: 32754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32380-32754:1:exon

MAGTDC_RS00770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00770
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVDKDRMNDGCDMLLAKAYISNLLTDLLISPEEEKNSNVVLHPIVERNSILEILSVFDITCNEQIRLMVKPLILKQNITTYLNWLLNNNYVTNITKNKTTKMVKFIFKKGDVIQVLIIYFIFLT
SIO_010081: MAGTDC_RS00770
subclass of: SO_0000673
so part of: MAGTDC_RS00770
location: 32380..32754
location: region:32380-32754:1
so has part: feature:32380-32754:1:exon

WP_146656615.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32380-32754:1:exon

MAGTDC_RS00775
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00775
old locus tag: magtdc_19
so part of: sequence
location: 32760..33404
location: region:32760-33404:1
so has part: feature:32760-33404:1:exon
subclass of: SO_0000010

79947586
type: Gene
SIO_000068: ncbigene

position:32760:1
position: 32760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33404:1
position: 33404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32760-33404:1:exon

MAGTDC_RS00775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00775
old locus tag: magtdc_19
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MENIRINIRKGSWRSCNCSGLYRLANLVCIKSQILLDQTLWTTKLLTTRPRFILKRIKEEQMKLILAVNYNVNRGVVMKSVDLIFQVFLLARSIGLNINNIIRLINYWNIVAITQHYDKWSSLLRTNKLNFNMNYQFSINNIRSNKLDNIILNGLNNLISDLFNVIFKLGLDGYRYHNKLITLFYNILQNVIALICNRGIKCSVMFNEVINKRR
SIO_010081: MAGTDC_RS00775
subclass of: SO_0000673
so part of: MAGTDC_RS00775
location: 32760..33404
location: region:32760-33404:1
so has part: feature:32760-33404:1:exon

WP_146656616.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32760-33404:1:exon

MAGTDC_RS00780
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00780
old locus tag: magtdc_20
so part of: sequence
location: 39524..39946
location: region:39524-39946:1
so has part: feature:39524-39946:1:exon
subclass of: SO_0000010

79947587
type: Gene
SIO_000068: ncbigene

position:39524:1
position: 39524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39946:1
position: 39946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39524-39946:1:exon

MAGTDC_RS00780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00780
old locus tag: magtdc_20
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKSNISISNSTFLRSEINISIYIITPQKSYLILMQVIKVNLYNDNKIVTYIPRMIYNIQEHLVMVSLLGACVKDLSRSDNIWFDGLLDSKCIGRMMNLGLEHRSKNLVISSKHQKYWISKLQSINKFCIDHLLFINLKC
SIO_010081: MAGTDC_RS00780
subclass of: SO_0000673
so part of: MAGTDC_RS00780
location: 39524..39946
location: region:39524-39946:1
so has part: feature:39524-39946:1:exon

WP_146656617.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39524-39946:1:exon

MAGTDC_RS00785
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00785
old locus tag: magtdc_21
so part of: sequence
location: 40100..41461
location: region:40100-41461:1
so has part: feature:40100-41461:1:exon
subclass of: SO_0000010

79947588
type: Gene
SIO_000068: ncbigene

position:40100:1
position: 40100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41461:1
position: 41461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40100-41461:1:exon

MAGTDC_RS00785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00785
old locus tag: magtdc_21
EC number: 2.1.2.1
inference: COORDINATES: protein motif:HMM:NF000586.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: serine hydroxymethyltransferase
translation: MWKRLLTIIPSKKQQENTNVITTIQQCEKNLSTHDTHDVLVKSILENELNRQTTSLNLITSENLVSKAVFKINSNIFINKCTVGYPGGRYYGGCEFVDELEKEAINRAKCLFKCKYANVQPHSGSQMNQAVMLALLSSGDTIMGMDQKYGGRFTHGSVVHISGMWLKYISYGIDLKTGLIDMNEVLNVAVKYRPRFIIAGSSSYPRTIDWKAFKQVADESDSFLFADISHIAGLIVTGLHPSPIEYCDVVTTTTHRSLRGPHGGLILSNNQELFDRISCSLFPEIQSGPMISVIAAKAMAFFEAQQDDYKTLTKSVIENAKTMVERLKIKGINVISNGTDNHLVIIDLKALGIVDEQVASWFNRCRIIVNKNTTSKDKSLTNSSANIISVLRLSTCACTSRGLKKEDFEKIADMIADGLLEIKDKGKLSPLLETTIKTQVLNITNKYPIDYNV
SIO_010081: MAGTDC_RS00785
subclass of: SO_0000673
so part of: MAGTDC_RS00785
location: 40100..41461
location: region:40100-41461:1
so has part: feature:40100-41461:1:exon

WP_278046863.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40100-41461:1:exon