Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant15, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant15, whole genome shotgun sequence.
sequence version: NZ_CM008775.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008775.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008775.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 10839
topology: circular
so has quality: SO_0000988
location: 1..10839
location: region:1-10839:1
RO_0002162: 573658

NZ_CM008775
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10839:1
position: 10839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10839:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant15
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS00535
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00535
so part of: sequence
location: join(10778..10839,1..154)
location: region:1-10839:1
so has part: feature:10778-10839:1:exon
so has part: feature:1-154:1:exon
subclass of: SO_0000010

79947552
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:10778-10839:1:exon

position:10778:1
position: 10778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-154:1:exon

position:154:1
position: 154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MAGTDC_RS00535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00535
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGSVMGMALDVWDGRVCGEMEDRTLLIWTRFLVGSRVISRLFVGGSGDRIEMKYGRIGGCSGRLEVLSVCW
SIO_010081: MAGTDC_RS00535
subclass of: SO_0000673
so part of: MAGTDC_RS00535
location: join(10778..10839,1..154)
location: region:1-10839:1
so has part: feature:10778-10839:1:exon
so has part: feature:1-154:1:exon

WP_146656594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10778-10839:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-154:1:exon

MAGTDC_RS00540
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00540
so part of: sequence
location: 99..611
location: region:99-611:1
so has part: feature:99-611:1:exon
subclass of: SO_0000010

79947553
type: Gene
SIO_000068: ncbigene

position:99:1
position: 99
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:611:1
position: 611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99-611:1:exon

MAGTDC_RS00540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVGLEDVRVGWRFWVYVDKMGLKAWRLLNSTVLFREDRMDVLMKGYMFCLGFIRWDRLEMLELISLGLDEGIVWRFECFNRDGLEQRRYGCCWVRTLKFGGWNNIPMGVHRSCRCWLGNGGKRSNVWRDGIGGGLTGYRSQIRIADWRRKGQCWGSDVGYGGGRWQRCGR
SIO_010081: MAGTDC_RS00540
subclass of: SO_0000673
so part of: MAGTDC_RS00540
location: 99..611
location: region:99-611:1
so has part: feature:99-611:1:exon

WP_192572928.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99-611:1:exon

MAGTDC_RS05200
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05200
so part of: sequence
location: 612..737
location: region:612-737:1
so has part: feature:612-737:1:exon
subclass of: SO_0000010

79948309
type: Gene
SIO_000068: ncbigene

position:612:1
position: 612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:737:1
position: 737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:612-737:1:exon

MAGTDC_RS05200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05200
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MEVGDGDLDRCQFGWDPQVKFLIWCTPSLGVIIGGWLVGWS
SIO_010081: MAGTDC_RS05200
subclass of: SO_0000673
so part of: MAGTDC_RS05200
location: 612..737
location: region:612-737:1
so has part: feature:612-737:1:exon

WP_278046854.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:612-737:1:exon

MAGTDC_RS05205
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05205
so part of: sequence
location: 759..998
location: region:759-998:1
so has part: feature:759-998:1:exon
subclass of: SO_0000010

79948310
type: Gene
SIO_000068: ncbigene

position:759:1
position: 759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:998:1
position: 998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:759-998:1:exon

MAGTDC_RS05205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05205
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MWPSGRGPLGRWLDVWAPGEGHRLANDIMLGTEYRWVVDVIVGLGRINRSCWDVDVNGCCVGGLLWLGGDGMMGRKYGC
SIO_010081: MAGTDC_RS05205
subclass of: SO_0000673
so part of: MAGTDC_RS05205
location: 759..998
location: region:759-998:1
so has part: feature:759-998:1:exon

WP_278046855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:759-998:1:exon

MAGTDC_RS00550
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00550
so part of: sequence
location: 992..1168
location: region:992-1168:1
so has part: feature:992-1168:1:exon
subclass of: SO_0000010

79947554
type: Gene
SIO_000068: ncbigene

position:992:1
position: 992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1168:1
position: 1168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:992-1168:1:exon

MAGTDC_RS00550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00550
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLDVGLMGWIGLIVRVCCNFMIIGITLLGVGLIGGNWWRFGIRFRWDRCLHVGVEDWD
SIO_010081: MAGTDC_RS00550
subclass of: SO_0000673
so part of: MAGTDC_RS00550
location: 992..1168
location: region:992-1168:1
so has part: feature:992-1168:1:exon

WP_192572929.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:992-1168:1:exon

MAGTDC_RS00555
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00555
so part of: sequence
location: 1265..1462
location: region:1265-1462:1
so has part: feature:1265-1462:1:exon
subclass of: SO_0000010

79947555
type: Gene
SIO_000068: ncbigene

position:1265:1
position: 1265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1462:1
position: 1462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1265-1462:1:exon

MAGTDC_RS00555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVGLMLDLWTLVGLELGMGVVNVLLLWLLVKFNILGRIYGFKYWFGEYGRWEVGFMANVRCYIAG
SIO_010081: MAGTDC_RS00555
subclass of: SO_0000673
so part of: MAGTDC_RS00555
location: 1265..1462
location: region:1265-1462:1
so has part: feature:1265-1462:1:exon

WP_192572930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1265-1462:1:exon

MAGTDC_RS00560
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00560
so part of: sequence
location: 1393..1596
location: region:1393-1596:1
so has part: feature:1393-1596:1:exon
subclass of: SO_0000010

79947556
type: Gene
SIO_000068: ncbigene

position:1393:1
position: 1393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1596:1
position: 1596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1393-1596:1:exon

MAGTDC_RS00560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00560
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVWRVWTLGGWIYGQRSMLYRWVGLGVGCVKKMWMGDKVHIMDGEGGMNWPVMWMFGLEGRQAGLAC
SIO_010081: MAGTDC_RS00560
subclass of: SO_0000673
so part of: MAGTDC_RS00560
location: 1393..1596
location: region:1393-1596:1
so has part: feature:1393-1596:1:exon

WP_146656583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1393-1596:1:exon

MAGTDC_RS00565
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00565
so part of: sequence
location: 1706..2035
location: region:1706-2035:1
so has part: feature:1706-2035:1:exon
subclass of: SO_0000010

79947557
type: Gene
SIO_000068: ncbigene

position:1706:1
position: 1706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2035:1
position: 2035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1706-2035:1:exon

MAGTDC_RS00565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGWRNGFDDGGWWGVGMFGRWKDQRGWGWGGLVKRCVREDLDWCLLDDGGFFGGCYAVVGFVEGLDWFVWGFDEVGFEDFDDNVREDVGFGRRSMFGSNLNDIGTLLGR
SIO_010081: MAGTDC_RS00565
subclass of: SO_0000673
so part of: MAGTDC_RS00565
location: 1706..2035
location: region:1706-2035:1
so has part: feature:1706-2035:1:exon

WP_146656584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1706-2035:1:exon

MAGTDC_RS04150
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04150
so part of: sequence
location: 2131..2295
location: region:2131-2295:1
so has part: feature:2131-2295:1:exon
subclass of: SO_0000010

79948121
type: Gene
SIO_000068: ncbigene

position:2131:1
position: 2131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2295:1
position: 2295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2131-2295:1:exon

MAGTDC_RS04150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVSYFSSIHGWNIMSVITSGLDTVCGFNGRLLSCCWGWFLGFGCFGWCRLGVGV
SIO_010081: MAGTDC_RS04150
subclass of: SO_0000673
so part of: MAGTDC_RS04150
location: 2131..2295
location: region:2131-2295:1
so has part: feature:2131-2295:1:exon

WP_192572931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2131-2295:1:exon

MAGTDC_RS00570
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00570
so part of: sequence
location: 2692..2952
location: region:2692-2952:1
so has part: feature:2692-2952:1:exon
subclass of: SO_0000010

79947558
type: Gene
SIO_000068: ncbigene

position:2692:1
position: 2692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2952:1
position: 2952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2692-2952:1:exon

MAGTDC_RS00570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGSVGDWDNEVMSEVGWRWSLALCWLDEVGLGRMGVEVKDRGRCVGGGCCGCWILVVEIMRWGRISLVWVREDHLVCAWWEVMCFG
SIO_010081: MAGTDC_RS00570
subclass of: SO_0000673
so part of: MAGTDC_RS00570
location: 2692..2952
location: region:2692-2952:1
so has part: feature:2692-2952:1:exon

WP_146656585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2692-2952:1:exon

MAGTDC_RS00575
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00575
so part of: sequence
location: 2921..3196
location: region:2921-3196:1
so has part: feature:2921-3196:1:exon
subclass of: SO_0000010

79947559
type: Gene
SIO_000068: ncbigene

position:2921:1
position: 2921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3196:1
position: 3196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2921-3196:1:exon

MAGTDC_RS00575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLGGKLCVSVSSVWRLATTVGWGLIGQHNYEGDGRIWMGEVMVVGLRTLPQRPRLSAIDHADDGWMMWRLVQRLRGVWSGLGRFTTFRSGL
SIO_010081: MAGTDC_RS00575
subclass of: SO_0000673
so part of: MAGTDC_RS00575
location: 2921..3196
location: region:2921-3196:1
so has part: feature:2921-3196:1:exon

WP_192572934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2921-3196:1:exon

MAGTDC_RS00580
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00580
so part of: sequence
location: 3206..3427
location: region:3206-3427:1
so has part: feature:3206-3427:1:exon
subclass of: SO_0000010

79947560
type: Gene
SIO_000068: ncbigene

position:3206:1
position: 3206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3427:1
position: 3427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3206-3427:1:exon

MAGTDC_RS00580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00580
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MEGSVGVRTLDPEIAIGNTMERGVDVGLEVKSMVLSRGGVLRSNPSSDASPSLWMGMIIGIWVDGFLRMGTFR
SIO_010081: MAGTDC_RS00580
subclass of: SO_0000673
so part of: MAGTDC_RS00580
location: 3206..3427
location: region:3206-3427:1
so has part: feature:3206-3427:1:exon

WP_146656587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3206-3427:1:exon

MAGTDC_RS05210
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05210
so part of: sequence
location: 3548..3718
location: region:3548-3718:1
so has part: feature:3548-3718:1:exon
subclass of: SO_0000010

79948311
type: Gene
SIO_000068: ncbigene

position:3548:1
position: 3548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3718:1
position: 3718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3548-3718:1:exon

MAGTDC_RS05210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05210
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVVRLSLIGVNQLAGMRAMSWMLARIGSLGLGDGRLAWKPMGWNRHVVSRPEVHRG
SIO_010081: MAGTDC_RS05210
subclass of: SO_0000673
so part of: MAGTDC_RS05210
location: 3548..3718
location: region:3548-3718:1
so has part: feature:3548-3718:1:exon

WP_278046856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3548-3718:1:exon

MAGTDC_RS04160
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04160
so part of: sequence
location: 3833..3994
location: region:3833-3994:1
so has part: feature:3833-3994:1:exon
subclass of: SO_0000010

79948122
type: Gene
SIO_000068: ncbigene

position:3833:1
position: 3833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3994:1
position: 3994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3833-3994:1:exon

MAGTDC_RS04160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKSSRLDSMGSYAYVVLVLRWEFLIWTLDVFWWGLGITMVIGYRMLGSEDGFE
SIO_010081: MAGTDC_RS04160
subclass of: SO_0000673
so part of: MAGTDC_RS04160
location: 3833..3994
location: region:3833-3994:1
so has part: feature:3833-3994:1:exon

WP_192572936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3833-3994:1:exon

MAGTDC_RS00590
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00590
so part of: sequence
location: 3981..4247
location: region:3981-4247:1
so has part: feature:3981-4247:1:exon
subclass of: SO_0000010

79947561
type: Gene
SIO_000068: ncbigene

position:3981:1
position: 3981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4247:1
position: 4247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3981-4247:1:exon

MAGTDC_RS00590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVLNRVNNTSMKDRSIVGVADRMRMEGWNNVREVWEGIFGYLVKYINVWWIIWCLGCGLGWWLFWSHLGHFVVVIGVWGLVGFDFGEV
SIO_010081: MAGTDC_RS00590
subclass of: SO_0000673
so part of: MAGTDC_RS00590
location: 3981..4247
location: region:3981-4247:1
so has part: feature:3981-4247:1:exon

WP_146656589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3981-4247:1:exon

MAGTDC_RS05215
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05215
so part of: sequence
location: 4256..4384
location: region:4256-4384:1
so has part: feature:4256-4384:1:exon
subclass of: SO_0000010

79948312
type: Gene
SIO_000068: ncbigene

position:4256:1
position: 4256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4384:1
position: 4384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4256-4384:1:exon

MAGTDC_RS05215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MWGRWYGFHVIYLWVVWFAIKMLWMLLWIRVWRGWMVRVRSS
SIO_010081: MAGTDC_RS05215
subclass of: SO_0000673
so part of: MAGTDC_RS05215
location: 4256..4384
location: region:4256-4384:1
so has part: feature:4256-4384:1:exon

WP_278046857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4256-4384:1:exon

MAGTDC_RS05220
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05220
so part of: sequence
location: 4433..4555
location: region:4433-4555:1
so has part: feature:4433-4555:1:exon
subclass of: SO_0000010

79948313
type: Gene
SIO_000068: ncbigene

position:4433:1
position: 4433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4555:1
position: 4555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4433-4555:1:exon

MAGTDC_RS05220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MWWLVLIMFGWRLDAGMERLDVGINRMDVGDGRVGRLGSG
SIO_010081: MAGTDC_RS05220
subclass of: SO_0000673
so part of: MAGTDC_RS05220
location: 4433..4555
location: region:4433-4555:1
so has part: feature:4433-4555:1:exon

WP_278046858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4433-4555:1:exon

MAGTDC_RS00595
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00595
so part of: sequence
location: 4576..4809
location: region:4576-4809:1
so has part: feature:4576-4809:1:exon
subclass of: SO_0000010

79947562
type: Gene
SIO_000068: ncbigene

position:4576:1
position: 4576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4809:1
position: 4809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4576-4809:1:exon

MAGTDC_RS00595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MELRRLKWRVDWDRDWGRNGDYEGRVVLLIGWRLEVGFDGSLEDSMVRRLEGGEVGWRRMGLDGIGLGRSMFNMVGY
SIO_010081: MAGTDC_RS00595
subclass of: SO_0000673
so part of: MAGTDC_RS00595
location: 4576..4809
location: region:4576-4809:1
so has part: feature:4576-4809:1:exon

WP_146656590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4576-4809:1:exon

MAGTDC_RS04165
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04165
old locus tag: magtdc_118
so part of: sequence
location: complement(4759..5775)
location: region:4759-5775:-1
so has part: feature:4759-5775:-1:exon
subclass of: SO_0000010

79948123
type: Gene
SIO_000068: ncbigene

position:4759:-1
position: 4759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5775:-1
position: 5775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4759-5775:-1:exon

MAGTDC_RS04165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04165
old locus tag: magtdc_118
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVFFDDFSIKVLKTMNKLNKNTILLSLPEIAPNHWFNGVPSKLSGIPFDKTHRTWFSFQPIVWQFQHILPNINPTICIGKTKISNTLTPYIGISNAATTLWGSFIPNLITAIETCRSISPNNETFTLNVSCRDVYDSIVDICAFNPPIPNLLKSCFGNHVALKTLLSTLDICSIPPGTKRLRVLRNETYTRLLDLYTTVNKILSPFGRSINANLLAQTVAIKSCYVNSEKLNKFRRLLSTNIEINQTIRLLWGLPRSLGATLALKRLKDNLNSIPNLTIYHRCFSNKQVSPNTLAFSQLTKSSSTCFLNEARTISNRVISTGLITYHIKHRSPQTNPI
SIO_010081: MAGTDC_RS04165
subclass of: SO_0000673
so part of: MAGTDC_RS04165
location: complement(4759..5775)
location: region:4759-5775:-1
so has part: feature:4759-5775:-1:exon

WP_192572937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4759-5775:-1:exon

MAGTDC_RS00610
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00610
so part of: sequence
location: 5779..6075
location: region:5779-6075:1
so has part: feature:5779-6075:1:exon
subclass of: SO_0000010

79947563
type: Gene
SIO_000068: ncbigene

position:5779:1
position: 5779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6075:1
position: 6075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5779-6075:1:exon

MAGTDC_RS00610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSVGGVDVGGWMNGACFGRNKWGCWGSMDVEVGMWNNGIGDVWRLLGSKKRWLEVGGMGTGRSWGGLLREMIQGWNGHWRSGCWIWGRRLVAWSFWWD
SIO_010081: MAGTDC_RS00610
subclass of: SO_0000673
so part of: MAGTDC_RS00610
location: 5779..6075
location: region:5779-6075:1
so has part: feature:5779-6075:1:exon

WP_192572926.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5779-6075:1:exon

MAGTDC_RS04170
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04170
so part of: sequence
location: 6024..6179
location: region:6024-6179:1
so has part: feature:6024-6179:1:exon
subclass of: SO_0000010

79948124
type: Gene
SIO_000068: ncbigene

position:6024:1
position: 6024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6179:1
position: 6179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6024-6179:1:exon

MAGTDC_RS04170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLDLRSEVGSLVVLMGLERCTDLLWGDWWLDNCWLGSYSSVLPCERKVPTV
SIO_010081: MAGTDC_RS04170
subclass of: SO_0000673
so part of: MAGTDC_RS04170
location: 6024..6179
location: region:6024-6179:1
so has part: feature:6024-6179:1:exon

WP_192572927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6024-6179:1:exon

MAGTDC_RS00615
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00615
old locus tag: magtdc_120
so part of: sequence
location: complement(6193..8907)
location: region:6193-8907:-1
so has part: feature:6193-8907:-1:exon
subclass of: SO_0000573

79947564
type: Gene
SIO_000068: ncbigene

position:6193:-1
position: 6193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8907:-1
position: 8907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6193-8907:-1:exon

MAGTDC_RS00615
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS00615
old locus tag: magtdc_120
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS00615
subclass of: SO_0000673
so part of: MAGTDC_RS00615
location: complement(6193..8907)
location: region:6193-8907:-1
so has part: feature:6193-8907:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6193-8907:-1:exon

MAGTDC_RS00620
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00620
old locus tag: magtdc_119
so part of: sequence
location: complement(9004..10567)
location: region:9004-10567:-1
so has part: feature:9004-10567:-1:exon
subclass of: SO_0000573

79947565
type: Gene
SIO_000068: ncbigene

position:9004:-1
position: 9004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10567:-1
position: 10567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9004-10567:-1:exon

MAGTDC_RS00620
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS00620
old locus tag: magtdc_119
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS00620
subclass of: SO_0000673
so part of: MAGTDC_RS00620
location: complement(9004..10567)
location: region:9004-10567:-1
so has part: feature:9004-10567:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9004-10567:-1:exon