Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant13, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant13, whole genome shotgun sequence.
sequence version: NZ_CM008773.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008773.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008773.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 17780
topology: circular
so has quality: SO_0000988
location: 1..17780
location: region:1-17780:1
RO_0002162: 573658

NZ_CM008773
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17780:1
position: 17780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17780:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant13
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS00460
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00460
old locus tag: magtdc_110
so part of: sequence
location: join(17772..17780,1..564)
location: region:1-17780:1
so has part: feature:17772-17780:1:exon
so has part: feature:1-564:1:exon
subclass of: SO_0000010

79947541
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:17772-17780:1:exon

position:17772:1
position: 17772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-564:1:exon

position:564:1
position: 564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MAGTDC_RS00460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00460
old locus tag: magtdc_110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLRLGTEQIGSNLRWNKSIFVLSWNVAVKNMPQCCYHSITRYVVTRLRYCFGFDVIKYCVYSDGVFGLLASSLSKKGIILTDTYALHSLLRNVCGGLDVKIYCLSGLIKPRLSIGCAKSCIQLDLCIKLITLIYGVQPVIVVGTAPTTIFRMLEISKPTLVIATACGQINSSLVKGWGSSLSNESCSNFS
SIO_010081: MAGTDC_RS00460
subclass of: SO_0000673
so part of: MAGTDC_RS00460
location: join(17772..17780,1..564)
location: region:1-17780:1
so has part: feature:17772-17780:1:exon
so has part: feature:1-564:1:exon

WP_146656575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17772-17780:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-564:1:exon

MAGTDC_RS00465
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00465
old locus tag: magtdc_111
so part of: sequence
location: complement(508..4557)
location: region:508-4557:-1
so has part: feature:508-4557:-1:exon
subclass of: SO_0000010

79947542
type: Gene
SIO_000068: ncbigene

position:508:-1
position: 508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4557:-1
position: 4557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:508-4557:-1:exon

MAGTDC_RS00465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00465
old locus tag: magtdc_111
inference: COORDINATES: protein motif:HMM:NF016859.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRSEFGDYDQRDVLVGCWGTMQVDSRRLEEGRDFLFQGHNESVSRIKISLASPETILSYSYGEVIETEMFDVKTKKPIEGGLYCERIFGPLNCRDRSFDQRSEQDGFIEIFQRSRFGHIQLAVPIVHTWFYRTEPDVLATLIGKPISILKEIVSCDMHLICESTSQDYNVGQLIRSNDYLKLCNGVDKIVILSGGKAILKLLSNVNIKQICDKLETRCSSETSVEALNKLRGKIELIKGLGCDGIKPDWMVLCILPVLPAELRPIIELEDDNISTNTSDIYRNILMANDDVLAKLDSISKRDDVGFEEYMVSLRNLQGSVDMLFDSTDVSDYKSSYNNLGLRGLTTVLKGKKGRFRSALLGRRVDYSGRSVIVPEPSLNLNECQIPKIIAFKLFEPFILSKLMSIFSIKSEWLARHTLKTNPDLNEELIGGILKHCPVLLNRAPTLHKLSIQAFWVKLTNERTIGLHPLVCAGYNADFDGDQMAVHVPLSMAARLEAVLLMVSSNNILHPAHGNPTLLPTKDMILGLYYLSLVSSEVSNICFNNYSEVVKAISNRKINIHSNVRFNLKVNGIMNVVKTTPGRLLISEIIPAKCNIIYDVSMSELTRTEVNHLIEFVYKICDEETSIKFSERLMRLGFKYATLSGISLAYQEFILSSSKSKMLVKMNGRSDGFIKDWNTSVNKSHDYEGRWNGYKTALEQIYLDVDANIRGSGVDQTSFQMMINSGARGTLSQARQIIGARGLILGFDDEISNKPVLGSYIDGLSLLEFYKLTFTARKGLIITALNTSSSGYLTRKLVEVSREYVIKETDCHTDIGIDVGMCDDYHLMRDRIIGRILLDAVMIDNKCILNANELITDENIHKLLEHSKISIRIRSPITCLTRNGVCKMCYGLSLNTNTLPPLGESVGILASQSIGEPGIQLTLRTFHGLNSSEKPEEIKPIDRCLTTPCSGFVKIINIVCIYSSSGDIIVANTKCFITILGINIKQRIDITRGTRLTTRNNTFVRTGDVIGIQYPNYNCLISLVEGRTMFENVIINVNAIVIPRTGTSLKKYWFDLRNNTPWLKPIIIRVGNLKFVCSHNDVYLDMAVVEPNLKVQSFDELLVNKTMDIHNFKLRVHEELETLTKLFENTSSEDCSDMAPVNGSLRLVNTKSNKKIYVLDPNKSSLIPIIYITDGNGLLYGENIKCGSILSSNDINLPNYLDHNGFNKLIEVFITKVQRIYGSQGVDVNSKHIEIILRLMTNWVLVTKSEIHDILEGEELDWRLIQNYRKIYGNNKTVNFKRILHSINNVASNGSTLLSNIAFQGSSKSLVKAMLVSKHQKFGIKDSIMFGKLAEIGTGFVRKRTTPSFN
SIO_010081: MAGTDC_RS00465
subclass of: SO_0000673
so part of: MAGTDC_RS00465
location: complement(508..4557)
location: region:508-4557:-1
so has part: feature:508-4557:-1:exon

WP_146656564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:508-4557:-1:exon

MAGTDC_RS00470
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00470
old locus tag: magtdc_112
so part of: sequence
location: complement(4488..8162)
location: region:4488-8162:-1
so has part: feature:4488-8162:-1:exon
subclass of: SO_0000010

79947543
type: Gene
SIO_000068: ncbigene

position:4488:-1
position: 4488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8162:-1
position: 8162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4488-8162:-1:exon

MAGTDC_RS00470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00470
old locus tag: magtdc_112
inference: COORDINATES: protein motif:HMM:NF012771.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRINLTGDGDNNGQLLIDCPQGRLYSLPLFGCHNEIGIRLSKIRLHLSSLFPIEFRDYNIDFGDVVYDLRRWERCCVVSLKINFIDYDGTNDFDLIHSTNSVIIPLINLPLSNKKDVITVNGLHKTFISQLVKQSDVQVKVVDDDGFIIFKTIDFSPFKIKFNKSICDLYVDRDKCGCLESMLVYGIKRNHLVRTVGNEVVIAYRNNNWYRLKITMDCVVKNKFGWRRRLRGMKCFDILTTKGKVVSTIKFNKKQVIKLTKSSALTIGSPLRIVLHKMLTKCMFKFDRCLDLRGLNPVNLERINMVDMTMAGRHLLNSFTEQNDWNFDMLTKRDLILIWNKCVNTNKKIDESNFNVRLIRGIGDTIIDWVINVLEDVLFSRIQILEPDLVIKRIAMLFNRHQRSIDKLFNQSELVQHLEQLNSLTKLDQKLRVLNMRSDGVSIRTTGTSSRYVQKWHLGKLCPIESPEGQNIGLVLSLALHTSFDVDGQLLTTFCIEDTNNRHNKISHLNYYNVGRYSEPIVSGSDERFIEDGNSDSKQHNVVRLINKAQVFSPVVNLIPFLTHNDPTRALMATNMLKQAIPLTHPQPPLIGTGLESSVMAATNDNITAKCTSVVMEVDGTKVTTYNPVTMEYYSYPIPDTTSRGQNGCERFRSVVKVGQIIKQGDVVAECQSSSDGEMSLGVNLLAAIMCWRGYNYEDSILLSEDVVHRGLLHSMHIVSLDVEVFKTTSGHEILTNKLNIGENVGVNKLMDSGFVEAGSLVNEGDVLVGKLTPIAKGKSTEANDLSHSMFTNEVDVRYIDSSVRVPIGIRRAVVLGITEEGVEVDQMKLKQNEWLETLSNINEKYWRRLMVLSEQGGIKVNVSVVKTNTNIMEFDIDDGNILSDLMLLKKMFSLEVRRFISLYKYKSNARLTCNKRSRIRGKHVGLEVINRIKIRLLVRRSIEVGDKVCGRHGNKGVISRIVPKEDMPYLADGTVIDIVINPLSIPSRMNIGQILEIQLGLVSHGLGLEYKRFVDIYNKLNNKMLFMELIGKKFTEIDPNVDIQSLSFDDVLEMSRDLANGVRFACPLTDESTIELLDQFNKRVNNRDRFSQFQLYDGRMGLPFERKTTVGKLYVLKLDHLVDNKIHVRSVGPYSHILKQPVKGRDNKGGQRLGEMEVWALQSYGVASMLKEVCTAKCDDILSRKLIKQSVFNNRPRLESTWGQSLVTTIREMFSLVVEVRCR
SIO_010081: MAGTDC_RS00470
subclass of: SO_0000673
so part of: MAGTDC_RS00470
location: complement(4488..8162)
location: region:4488-8162:-1
so has part: feature:4488-8162:-1:exon

WP_146656565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4488-8162:-1:exon

MAGTDC_RS04100
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04100
so part of: sequence
location: complement(8198..8338)
location: region:8198-8338:-1
so has part: feature:8198-8338:-1:exon
subclass of: SO_0000010

79948112
type: Gene
SIO_000068: ncbigene

position:8198:-1
position: 8198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8338:-1
position: 8338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8198-8338:-1:exon

MAGTDC_RS04100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDFVSIYLLEVWELAGLDVRDLGHNICILNGEILGLRLSGCLGNGW
SIO_010081: MAGTDC_RS04100
subclass of: SO_0000673
so part of: MAGTDC_RS04100
location: complement(8198..8338)
location: region:8198-8338:-1
so has part: feature:8198-8338:-1:exon

WP_192572921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8198-8338:-1:exon

MAGTDC_RS05180
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05180
so part of: sequence
location: complement(8345..8491)
location: region:8345-8491:-1
so has part: feature:8345-8491:-1:exon
subclass of: SO_0000010

79948305
type: Gene
SIO_000068: ncbigene

position:8345:-1
position: 8345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8491:-1
position: 8491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8345-8491:-1:exon

MAGTDC_RS05180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05180
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDWSSNVELTDLLLGYKCDRLYGQLKSIIEVGTYGGWNVIVITSCWGN
SIO_010081: MAGTDC_RS05180
subclass of: SO_0000673
so part of: MAGTDC_RS05180
location: complement(8345..8491)
location: region:8345-8491:-1
so has part: feature:8345-8491:-1:exon

WP_278046851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8345-8491:-1:exon

MAGTDC_RS00480
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00480
old locus tag: magtdc_113
so part of: sequence
location: 8652..9581
location: region:8652-9581:1
so has part: feature:8652-9581:1:exon
subclass of: SO_0000010

79947544
type: Gene
SIO_000068: ncbigene

position:8652:1
position: 8652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9581:1
position: 9581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8652-9581:1:exon

MAGTDC_RS00480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00480
old locus tag: magtdc_113
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAIVHTISILKYLVGANLKHLVYNENGNPIVTCYAVIGQWLIRTETAQGGYPHAEVLCLSELGREKPNEVILSLSPCTEFSNTPPCCYSLLAFCSSLIIQELDMAHAESIRFLRCFISIGWMRSRSVALIPSMRFMVDVNEQQHILDPRIKLLTHNIHSNPSIFEVTKNGVIMKQNTDALTRLRILSKKLNRDIRSGKVPIKLPVEMSLNSSLRKKIDKIHRSLIHSRMISRRLRRLTLGLAITNDMNFIGPTETNVNLFMTRIEPTIPLSRRINFNFRPRNNGPNTLLYRNIRPLTRRLFFINQIIDC
SIO_010081: MAGTDC_RS00480
subclass of: SO_0000673
so part of: MAGTDC_RS00480
location: 8652..9581
location: region:8652-9581:1
so has part: feature:8652-9581:1:exon

WP_146656567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8652-9581:1:exon

MAGTDC_RS04105
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04105
so part of: sequence
location: complement(9556..9726)
location: region:9556-9726:-1
so has part: feature:9556-9726:-1:exon
subclass of: SO_0000010

79948113
type: Gene
SIO_000068: ncbigene

position:9556:-1
position: 9556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9726:-1
position: 9726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9556-9726:-1:exon

MAGTDC_RS04105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04105
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIGGRIVMREKSWWSVQGCWGLECRCYGFNSWNVKECSCWCWKEGSDVVNNRLFGL
SIO_010081: MAGTDC_RS04105
subclass of: SO_0000673
so part of: MAGTDC_RS04105
location: complement(9556..9726)
location: region:9556-9726:-1
so has part: feature:9556-9726:-1:exon

WP_278046849.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9556-9726:-1:exon

MAGTDC_RS04110
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04110
so part of: sequence
location: complement(9797..9994)
location: region:9797-9994:-1
so has part: feature:9797-9994:-1:exon
subclass of: SO_0000010

79948114
type: Gene
SIO_000068: ncbigene

position:9797:-1
position: 9797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9994:-1
position: 9994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9797-9994:-1:exon

MAGTDC_RS04110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFVGSRKEGWMISLVSIISLVSFRRVIVLVREGYVRSMFGSLRYKEVGVGMVSYWCFIDYNYELG
SIO_010081: MAGTDC_RS04110
subclass of: SO_0000673
so part of: MAGTDC_RS04110
location: complement(9797..9994)
location: region:9797-9994:-1
so has part: feature:9797-9994:-1:exon

WP_192572913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9797-9994:-1:exon

MAGTDC_RS04115
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04115
so part of: sequence
location: complement(10353..10511)
location: region:10353-10511:-1
so has part: feature:10353-10511:-1:exon
subclass of: SO_0000010

79948115
type: Gene
SIO_000068: ncbigene

position:10353:-1
position: 10353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10511:-1
position: 10511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10353-10511:-1:exon

MAGTDC_RS04115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVVSMKLDSNLYKLLFKVNKHRSLVSWQDGMYWLLDGNSDVWLGKCRSLVCE
SIO_010081: MAGTDC_RS04115
subclass of: SO_0000673
so part of: MAGTDC_RS04115
location: complement(10353..10511)
location: region:10353-10511:-1
so has part: feature:10353-10511:-1:exon

WP_192572914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10353-10511:-1:exon

MAGTDC_RS04120
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04120
so part of: sequence
location: complement(11541..11693)
location: region:11541-11693:-1
so has part: feature:11541-11693:-1:exon
subclass of: SO_0000010

79948116
type: Gene
SIO_000068: ncbigene

position:11541:-1
position: 11541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11693:-1
position: 11693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11541-11693:-1:exon

MAGTDC_RS04120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04120
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVQILLECWFGLVVSWDVRDRIMMFGDMYKKVRRIRFCHNDVLSCVGDCI
SIO_010081: MAGTDC_RS04120
subclass of: SO_0000673
so part of: MAGTDC_RS04120
location: complement(11541..11693)
location: region:11541-11693:-1
so has part: feature:11541-11693:-1:exon

WP_192572915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11541-11693:-1:exon

MAGTDC_RS00490
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00490
so part of: sequence
location: complement(11915..12094)
location: region:11915-12094:-1
so has part: feature:11915-12094:-1:exon
subclass of: SO_0000010

79947545
type: Gene
SIO_000068: ncbigene

position:11915:-1
position: 11915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12094:-1
position: 12094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11915-12094:-1:exon

MAGTDC_RS00490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MWKSMWWMSMMDVRGWKVKVWLRCDMGISVGENKRLDWMVCGCWGWIDWMVEGNNRYLM
SIO_010081: MAGTDC_RS00490
subclass of: SO_0000673
so part of: MAGTDC_RS00490
location: complement(11915..12094)
location: region:11915-12094:-1
so has part: feature:11915-12094:-1:exon

WP_146656569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11915-12094:-1:exon

MAGTDC_RS04125
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04125
so part of: sequence
location: complement(12545..12682)
location: region:12545-12682:-1
so has part: feature:12545-12682:-1:exon
subclass of: SO_0000010

79948117
type: Gene
SIO_000068: ncbigene

position:12545:-1
position: 12545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12682:-1
position: 12682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12545-12682:-1:exon

MAGTDC_RS04125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04125
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFGLNVWIKSMDRWKIGSLMGCSILVWYLIMRWDSNFVVLLLVKM
SIO_010081: MAGTDC_RS04125
subclass of: SO_0000673
so part of: MAGTDC_RS04125
location: complement(12545..12682)
location: region:12545-12682:-1
so has part: feature:12545-12682:-1:exon

WP_192572916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12545-12682:-1:exon

MAGTDC_RS05185
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05185
so part of: sequence
location: complement(13687..13821)
location: region:13687-13821:-1
so has part: feature:13687-13821:-1:exon
subclass of: SO_0000010

79948306
type: Gene
SIO_000068: ncbigene

position:13687:-1
position: 13687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13821:-1
position: 13821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13687-13821:-1:exon

MAGTDC_RS05185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05185
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MWICYCSSWWPFEDEKSTSIAKTSFVDNETFEGIDVYHKKRRCW
SIO_010081: MAGTDC_RS05185
subclass of: SO_0000673
so part of: MAGTDC_RS05185
location: complement(13687..13821)
location: region:13687-13821:-1
so has part: feature:13687-13821:-1:exon

WP_278046850.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13687-13821:-1:exon

MAGTDC_RS00500
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00500
so part of: sequence
location: 13997..14182
location: region:13997-14182:1
so has part: feature:13997-14182:1:exon
subclass of: SO_0000010

79947546
type: Gene
SIO_000068: ncbigene

position:13997:1
position: 13997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14182:1
position: 14182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13997-14182:1:exon

MAGTDC_RS00500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLSDLGKYTTFMRFIVVGEISEHKQTISILYLDHDIGCYQQVSTEHGSKVVIYTRRTLFVG
SIO_010081: MAGTDC_RS00500
subclass of: SO_0000673
so part of: MAGTDC_RS00500
location: 13997..14182
location: region:13997-14182:1
so has part: feature:13997-14182:1:exon

WP_146656571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13997-14182:1:exon

MAGTDC_RS04130
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04130
so part of: sequence
location: 16307..16453
location: region:16307-16453:1
so has part: feature:16307-16453:1:exon
subclass of: SO_0000010

79948118
type: Gene
SIO_000068: ncbigene

position:16307:1
position: 16307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16453:1
position: 16453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16307-16453:1:exon

MAGTDC_RS04130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04130
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MCCWSNVVLAISLNVGKMFICGSLLKIVETLVLGVVTFEEQNMDKCIV
SIO_010081: MAGTDC_RS04130
subclass of: SO_0000673
so part of: MAGTDC_RS04130
location: 16307..16453
location: region:16307-16453:1
so has part: feature:16307-16453:1:exon

WP_192572917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16307-16453:1:exon

MAGTDC_RS00505
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00505
so part of: sequence
location: complement(16614..16877)
location: region:16614-16877:-1
so has part: feature:16614-16877:-1:exon
subclass of: SO_0000010

79947547
type: Gene
SIO_000068: ncbigene

position:16614:-1
position: 16614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16877:-1
position: 16877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16614-16877:-1:exon

MAGTDC_RS00505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTSKTTQQQDVPVTEANTPSFHVYDQADLTRCSFANQTLPTSDAIRFPSTISFYLFNNKIILTSLSINPINNFNYHLLFPTFINSDM
SIO_010081: MAGTDC_RS00505
subclass of: SO_0000673
so part of: MAGTDC_RS00505
location: complement(16614..16877)
location: region:16614-16877:-1
so has part: feature:16614-16877:-1:exon

WP_192572918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16614-16877:-1:exon

MAGTDC_RS00510
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00510
so part of: sequence
location: 16949..17179
location: region:16949-17179:1
so has part: feature:16949-17179:1:exon
subclass of: SO_0000010

79947548
type: Gene
SIO_000068: ncbigene

position:16949:1
position: 16949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17179:1
position: 17179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16949-17179:1:exon

MAGTDC_RS00510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: METTTDRGCLGIILLIVGTLGLPWKDVLFDRYHWFDNKPMVGYGLFCSEMSRWTGWFWFGMESQRFDVKVGSGLNS
SIO_010081: MAGTDC_RS00510
subclass of: SO_0000673
so part of: MAGTDC_RS00510
location: 16949..17179
location: region:16949-17179:1
so has part: feature:16949-17179:1:exon

WP_146656573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16949-17179:1:exon

MAGTDC_RS00515
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00515
so part of: sequence
location: 17283..17468
location: region:17283-17468:1
so has part: feature:17283-17468:1:exon
subclass of: SO_0000010

79947549
type: Gene
SIO_000068: ncbigene

position:17283:1
position: 17283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17468:1
position: 17468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17283-17468:1:exon

MAGTDC_RS00515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00515
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIIGGGDRSLTTCLSFGWEDWLELIKTFDANMLDLITSFLFIVLLMWEVLSVTFGAWKVVV
SIO_010081: MAGTDC_RS00515
subclass of: SO_0000673
so part of: MAGTDC_RS00515
location: 17283..17468
location: region:17283-17468:1
so has part: feature:17283-17468:1:exon

WP_192572919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17283-17468:1:exon

MAGTDC_RS04135
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04135
so part of: sequence
location: 17587..17748
location: region:17587-17748:1
so has part: feature:17587-17748:1:exon
subclass of: SO_0000010

79948119
type: Gene
SIO_000068: ncbigene

position:17587:1
position: 17587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17748:1
position: 17748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17587-17748:1:exon

MAGTDC_RS04135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04135
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSGSFRFGLMRFIRTWTIWIGLRRQCSSHWTSVAIKVADYTGINLYRLFDVRR
SIO_010081: MAGTDC_RS04135
subclass of: SO_0000673
so part of: MAGTDC_RS04135
location: 17587..17748
location: region:17587-17748:1
so has part: feature:17587-17748:1:exon

WP_192572920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17587-17748:1:exon