Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant12, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant12, whole genome shotgun sequence.
sequence version: NZ_CM008772.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008772.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008772.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 18787
topology: circular
so has quality: SO_0000988
location: 1..18787
location: region:1-18787:1
RO_0002162: 573658

NZ_CM008772
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18787:1
position: 18787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18787:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant12
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS00380
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00380
so part of: sequence
location: complement(join(18756..18787,1..178))
location: region:1-18787:-1
so has part: feature:1-178:-1:exon
so has part: feature:18756-18787:-1:exon
subclass of: SO_0000010

79947525
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18787:-1
position: 18787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-178:-1:exon

position:178:-1
position: 178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18756-18787:-1:exon

position:18756:-1
position: 18756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MAGTDC_RS00380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00380
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAIMGSRSHWWYKTFMVLHRSEINVEYTRWNEYDIDESTSYFVGTKSEQTGWLTTRGGSTDNIWLWPIT
SIO_010081: MAGTDC_RS00380
subclass of: SO_0000673
so part of: MAGTDC_RS00380
location: complement(join(18756..18787,1..178))
location: region:1-18787:-1
so has part: feature:1-178:-1:exon
so has part: feature:18756-18787:-1:exon

WP_146656563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-178:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18756-18787:-1:exon

MAGTDC_RS00385
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00385
so part of: sequence
location: 830..1009
location: region:830-1009:1
so has part: feature:830-1009:1:exon
subclass of: SO_0000010

79947526
type: Gene
SIO_000068: ncbigene

position:830:1
position: 830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1009:1
position: 1009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:830-1009:1:exon

MAGTDC_RS00385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIIVVPIQDHVYIRLFHVMDVVASERCNSVVKQIDERMKYNNVNIGMLFDNNVITSMFY
SIO_010081: MAGTDC_RS00385
subclass of: SO_0000673
so part of: MAGTDC_RS00385
location: 830..1009
location: region:830-1009:1
so has part: feature:830-1009:1:exon

WP_146656550.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:830-1009:1:exon

MAGTDC_RS00390
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00390
old locus tag: magtdc_104
so part of: sequence
location: 1891..3462
location: region:1891-3462:1
so has part: feature:1891-3462:1:exon
subclass of: SO_0000573

79947527
type: Gene
SIO_000068: ncbigene

position:1891:1
position: 1891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3462:1
position: 3462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1891-3462:1:exon

MAGTDC_RS00390
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS00390
old locus tag: magtdc_104
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS00390
subclass of: SO_0000673
so part of: MAGTDC_RS00390
location: 1891..3462
location: region:1891-3462:1
so has part: feature:1891-3462:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1891-3462:1:exon

MAGTDC_RS00395
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00395
so part of: sequence
location: complement(3496..3654)
location: region:3496-3654:-1
so has part: feature:3496-3654:-1:exon
subclass of: SO_0000010

79947528
type: Gene
SIO_000068: ncbigene

position:3496:-1
position: 3496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3654:-1
position: 3654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3496-3654:-1:exon

MAGTDC_RS00395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00395
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIDGWIPSIFILVINNNWTGNQPSHSFDGVIGSLGYLSLKYWISTLRQVLTI
SIO_010081: MAGTDC_RS00395
subclass of: SO_0000673
so part of: MAGTDC_RS00395
location: complement(3496..3654)
location: region:3496-3654:-1
so has part: feature:3496-3654:-1:exon

WP_192572909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3496-3654:-1:exon

MAGTDC_RS00400
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00400
so part of: sequence
location: complement(3688..3945)
location: region:3688-3945:-1
so has part: feature:3688-3945:-1:exon
subclass of: SO_0000010

79947529
type: Gene
SIO_000068: ncbigene

position:3688:-1
position: 3688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3945:-1
position: 3945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3688-3945:-1:exon

MAGTDC_RS00400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00400
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRLMLICVWNGRNLPSITCCFVVVWTYRVIDNKCWVESMKHGGNRQLEQRTHEYTSCFVELKWIWCSINSWRLCHMDVGFDIGCR
SIO_010081: MAGTDC_RS00400
subclass of: SO_0000673
so part of: MAGTDC_RS00400
location: complement(3688..3945)
location: region:3688-3945:-1
so has part: feature:3688-3945:-1:exon

WP_192572910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3688-3945:-1:exon

MAGTDC_RS00405
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00405
old locus tag: magtdc_103
so part of: sequence
location: 4024..6730
location: region:4024-6730:1
so has part: feature:4024-6730:1:exon
subclass of: SO_0000573

79947530
type: Gene
SIO_000068: ncbigene

position:4024:1
position: 4024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6730:1
position: 6730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4024-6730:1:exon

MAGTDC_RS00405
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 573658
locus tag: MAGTDC_RS00405
old locus tag: magtdc_103
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: MAGTDC_RS00405
subclass of: SO_0000673
so part of: MAGTDC_RS00405
location: 4024..6730
location: region:4024-6730:1
so has part: feature:4024-6730:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4024-6730:1:exon

MAGTDC_RS04085
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04085
so part of: sequence
location: 7064..7234
location: region:7064-7234:1
so has part: feature:7064-7234:1:exon
subclass of: SO_0000010

79948109
type: Gene
SIO_000068: ncbigene

position:7064:1
position: 7064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7234:1
position: 7234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7064-7234:1:exon

MAGTDC_RS04085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVVTHHFDGFHVQTDWRSHSNKYETTSSSQHRNKPTTNNHITHELWPNKVVLKWLI
SIO_010081: MAGTDC_RS04085
subclass of: SO_0000673
so part of: MAGTDC_RS04085
location: 7064..7234
location: region:7064-7234:1
so has part: feature:7064-7234:1:exon

WP_192572911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7064-7234:1:exon

MAGTDC_RS00410
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00410
so part of: sequence
location: 7222..7587
location: region:7222-7587:1
so has part: feature:7222-7587:1:exon
subclass of: SO_0000010

79947531
type: Gene
SIO_000068: ncbigene

position:7222:1
position: 7222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7587:1
position: 7587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7222-7587:1:exon

MAGTDC_RS00410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00410
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTNLTNVSSNMDNYGQQVRIENSKTERNTWWSKNRLPVVVNLKSWLKHKDQSIPLLVCWYLNKTYQSCQRPTSLFRNTETTNVATKWWQVHLNSQPVIQPEWQRWTTKVVIISSEVIISVD
SIO_010081: MAGTDC_RS00410
subclass of: SO_0000673
so part of: MAGTDC_RS00410
location: 7222..7587
location: region:7222-7587:1
so has part: feature:7222-7587:1:exon

WP_146656553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7222-7587:1:exon

MAGTDC_RS00415
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00415
old locus tag: magtdc_105
so part of: sequence
location: 7589..8587
location: region:7589-8587:1
so has part: feature:7589-8587:1:exon
subclass of: SO_0000010

79947532
type: Gene
SIO_000068: ncbigene

position:7589:1
position: 7589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8587:1
position: 8587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7589-8587:1:exon

MAGTDC_RS00415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00415
old locus tag: magtdc_105
inference: COORDINATES: protein motif:HMM:NF013161.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: FAD-binding oxidoreductase
translation: MLTTNMNNTHDKRRILTIESMSMKYNNNKIMATKSYTLASVLGVKHYTNTLFSFTTKRLKTFNFKPGEYTTIGLIIRGTLVFRDYYICSPTWDNKLEFYSKVVPNGLFTSFLRMVTTKSSIIIKKKTSRGLSLDVLDSGKRLFLLCTDIGIAAVSSIISEPNTYAKFGEVIVVIVCEYVQELQYFNDKLKQMTKDQRIKPYAKHKLRVYQSVTQEPYPYSGDLTWLIKSGTLIADLRTHNFDKMDRFMVCGSKQTTLDSINLLKSLGYSEGSIDYPGHLTYERIFVDQTFELLTDLDVLLKWLKLKHPDKDTKTLLNSNRSISSSFQLFFGY
SIO_010081: MAGTDC_RS00415
subclass of: SO_0000673
so part of: MAGTDC_RS00415
location: 7589..8587
location: region:7589-8587:1
so has part: feature:7589-8587:1:exon

WP_146656554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7589-8587:1:exon

MAGTDC_RS00420
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsL
locus tag: MAGTDC_RS00420
old locus tag: magtdc_106
so part of: sequence
location: 10866..11246
location: region:10866-11246:1
so has part: feature:10866-11246:1:exon
subclass of: SO_0000010

79947533
type: Gene
SIO_000068: ncbigene

position:10866:1
position: 10866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11246:1
position: 11246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10866-11246:1:exon

MAGTDC_RS00420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsL
locus tag: MAGTDC_RS00420
old locus tag: magtdc_106
inference: COORDINATES: protein motif:HMM:NF012391.2
note: interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S12
translation: MLGPMSLIEVSITKTQKMVMNGCWQITTNQLIKGVRWTKKEDNNTPTLDGTTFRDGICIRWLTQHNRNNNPTLRKVSEMELCNGNGVVVYVSGDSYNLQEHSVVIVRGGYVLKDYQGLDTIWLKIY
SIO_010081: MAGTDC_RS00420
subclass of: SO_0000673
so part of: MAGTDC_RS00420
location: 10866..11246
location: region:10866-11246:1
so has part: feature:10866-11246:1:exon

WP_146656555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10866-11246:1:exon

MAGTDC_RS04090
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04090
so part of: sequence
location: complement(11442..11606)
location: region:11442-11606:-1
so has part: feature:11442-11606:-1:exon
subclass of: SO_0000010

79948110
type: Gene
SIO_000068: ncbigene

position:11442:-1
position: 11442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11606:-1
position: 11606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11442-11606:-1:exon

MAGTDC_RS04090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFVSLLFIPRYYDQEPLSHPFDDVHRLGINLSSVGNWHVVNDYFVCWQHGCVWL
SIO_010081: MAGTDC_RS04090
subclass of: SO_0000673
so part of: MAGTDC_RS04090
location: complement(11442..11606)
location: region:11442-11606:-1
so has part: feature:11442-11606:-1:exon

WP_192572902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11442-11606:-1:exon

MAGTDC_RS00425
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00425
old locus tag: magtdc_107
so part of: sequence
location: 11613..12890
location: region:11613-12890:1
so has part: feature:11613-12890:1:exon
subclass of: SO_0000010

79947534
type: Gene
SIO_000068: ncbigene

position:11613:1
position: 11613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12890:1
position: 12890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11613-12890:1:exon

MAGTDC_RS00425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00425
old locus tag: magtdc_107
EC number: 2.1.2.1
inference: COORDINATES: protein motif:HMM:NF000586.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: serine hydroxymethyltransferase
translation: MMEPSCKTNLPTSDVLVESILKNELIRQSTSLNLIASENLVSEAVLKVQNNVFINKRADGYPGYRHYEGCGFVDELEKVVIDRAKRLFKCKYANVQPYSGSQMNQAVMLTLLSPGDTIMRMHLEWDGHLTHGLATNISGMWFNTVTYGVDPKTGTIDMNNVLNCAIRHRPKLIIVGSTSYPRTIDWKAFRRVADIVDSFLLADISHIAGLIVTGLQPSPIDHCDVVTTTTHESLKGPCSGLILSNNQELSKHISTTLFPRLQDGPMINVMVATAVALLEAKQDEYRTWSTIVVENAKAMAKRFKNRKIDIVSNGTDNHLVIIDLKKLGITDKQVTSWLDRCYITTNKTDISNHLLSTDVVSGLRLGTYACTSRGMRRDVFEKMADMIADILLEIKNKGEVSLPLKTKTRMVVLGLADKYPICYNV
SIO_010081: MAGTDC_RS00425
subclass of: SO_0000673
so part of: MAGTDC_RS00425
location: 11613..12890
location: region:11613-12890:1
so has part: feature:11613-12890:1:exon

WP_192572903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11613-12890:1:exon

MAGTDC_RS00430
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00430
so part of: sequence
location: 12883..13623
location: region:12883-13623:1
so has part: feature:12883-13623:1:exon
subclass of: SO_0000010

79947535
type: Gene
SIO_000068: ncbigene

position:12883:1
position: 12883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13623:1
position: 13623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12883-13623:1:exon

MAGTDC_RS00430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00430
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFRLNKILTYLSDIIKKRLFKPVIGFVDNLKSSMTDCLLVIKPIPLAIIGLLTTTDHHKLIKSIQNGCNSEPNTVCTPTNQYMFTGLDKTSTTLANVPSLSDDIKLSIISEPESKIKTSTNKPDTHPTVAEPNTHDPEVWSGRCCRSELTRLQRSDMPESNTTTVVSTPLHVNITNDNHKSVVTTEETYTHGSGIILMIKHEPWIDQWDNYPEVYRLRWNRHNNKVWPNVVPTMLTNTIDGKRYHI
SIO_010081: MAGTDC_RS00430
subclass of: SO_0000673
so part of: MAGTDC_RS00430
location: 12883..13623
location: region:12883-13623:1
so has part: feature:12883-13623:1:exon

WP_146656557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12883-13623:1:exon

MAGTDC_RS00435
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00435
so part of: sequence
location: 13756..13965
location: region:13756-13965:1
so has part: feature:13756-13965:1:exon
subclass of: SO_0000010

79947536
type: Gene
SIO_000068: ncbigene

position:13756:1
position: 13756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13965:1
position: 13965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13756-13965:1:exon

MAGTDC_RS00435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00435
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFYLTILLVILLNVTKKDGKNGAVNNTDRNDGDEGEDDDGGEGSEEGDEDEDTDDDDDADGTTKRCTRK
SIO_010081: MAGTDC_RS00435
subclass of: SO_0000673
so part of: MAGTDC_RS00435
location: 13756..13965
location: region:13756-13965:1
so has part: feature:13756-13965:1:exon

WP_146656558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13756-13965:1:exon

MAGTDC_RS00440
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00440
old locus tag: magtdc_108
so part of: sequence
location: 14079..15251
location: region:14079-15251:1
so has part: feature:14079-15251:1:exon
subclass of: SO_0000010

79947537
type: Gene
SIO_000068: ncbigene

position:14079:1
position: 14079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15251:1
position: 15251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14079-15251:1:exon

MAGTDC_RS00440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00440
old locus tag: magtdc_108
inference: COORDINATES: protein motif:HMM:NF013237.2
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO process: GO:0019346 - transsulfuration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: PLP-dependent transferase
translation: MEDTKEDINITRMITTKRRSELAYTINALNIIYHNIVKNRTLQAKTPSDITRSTTTDSQHWVSPAVHNLCSAITTLEYSDSTILTSSRLTATTLTVLCLLNPGDHALITDSVYYPLKQFCNVLSKLNINVDYFNPRDEYSLKTLLRTNTKLIHLESPCSDTFEVLDIDKICKYVKQRSDKCIISMDNSWATPLIYKPLIHGVDVSICDLTKYLIRWPNTDLASISTTKTLSHMFTKFKNLVDLTCDNCDLLSILNNLNASIFRLYQRYNPIMKLCRHLYTMRHLCQVFCPALPSSSDHGLWQQNYNLQNNTISIKLNENSIDKCKRFLSNLVIIKTDGVYDGNKTSASLFVIRHRLFGTESTYPIIRLQIGSDDVDGLITDLNNALITTG
SIO_010081: MAGTDC_RS00440
subclass of: SO_0000673
so part of: MAGTDC_RS00440
location: 14079..15251
location: region:14079-15251:1
so has part: feature:14079-15251:1:exon

WP_146656559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14079-15251:1:exon

MAGTDC_RS00445
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00445
old locus tag: magtdc_109
so part of: sequence
location: 15363..15935
location: region:15363-15935:1
so has part: feature:15363-15935:1:exon
subclass of: SO_0000010

79947538
type: Gene
SIO_000068: ncbigene

position:15363:1
position: 15363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15935:1
position: 15935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15363-15935:1:exon

MAGTDC_RS00445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00445
old locus tag: magtdc_109
inference: COORDINATES: protein motif:HMM:NF012360.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLCKTVGLKLSKPKPILANALNTGLLGLIIDDLLANFKRDPSCHSFIDCMLKPGFKVVSLYRLYPLVDLTTNRVLKHVKTNYGIEIGHGVWFGRRLVLDHTHGTVIGQQVKIGDNVTLMHGITLGSIGNQLGLTHRHPEVQSGSNVGTNSTVLGRIKIGHCVNVGANAVITKQVLPYNVLVGVPAQALLS
SIO_010081: MAGTDC_RS00445
subclass of: SO_0000673
so part of: MAGTDC_RS00445
location: 15363..15935
location: region:15363-15935:1
so has part: feature:15363-15935:1:exon

WP_278046847.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15363-15935:1:exon

MAGTDC_RS04095
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04095
so part of: sequence
location: complement(16749..16904)
location: region:16749-16904:-1
so has part: feature:16749-16904:-1:exon
subclass of: SO_0000010

79948111
type: Gene
SIO_000068: ncbigene

position:16749:-1
position: 16749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16904:-1
position: 16904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16749-16904:-1:exon

MAGTDC_RS04095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04095
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRLVCCVSVTSVFRCVGNHVWLSMTRVGLTEPKVNLTTLDTTLCRTKHAVP
SIO_010081: MAGTDC_RS04095
subclass of: SO_0000673
so part of: MAGTDC_RS04095
location: complement(16749..16904)
location: region:16749-16904:-1
so has part: feature:16749-16904:-1:exon

WP_192572906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16749-16904:-1:exon

MAGTDC_RS05175
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05175
so part of: sequence
location: 17378..17500
location: region:17378-17500:1
so has part: feature:17378-17500:1:exon
subclass of: SO_0000010

79948304
type: Gene
SIO_000068: ncbigene

position:17378:1
position: 17378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17500:1
position: 17500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17378-17500:1:exon

MAGTDC_RS05175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05175
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MINLLLKTSKVWVWSLCWKLYQQPMIDLVVIIDDIDGIWY
SIO_010081: MAGTDC_RS05175
subclass of: SO_0000673
so part of: MAGTDC_RS05175
location: 17378..17500
location: region:17378-17500:1
so has part: feature:17378-17500:1:exon

WP_278046848.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17378-17500:1:exon

MAGTDC_RS00450
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00450
so part of: sequence
location: 17745..18092
location: region:17745-18092:1
so has part: feature:17745-18092:1:exon
subclass of: SO_0000010

79947539
type: Gene
SIO_000068: ncbigene

position:17745:1
position: 17745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18092:1
position: 18092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17745-18092:1:exon

MAGTDC_RS00450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLLIQNQKHRSKPDVDDGLCWIKTNIHERLIRLSRRITSMKVSGLIWTEINNKDRMEVGMMVKTWIRRIYSHLNLYTIEVKNITTSTIVICDNERSDKRSLLRTCYLCWYLDAEW
SIO_010081: MAGTDC_RS00450
subclass of: SO_0000673
so part of: MAGTDC_RS00450
location: 17745..18092
location: region:17745-18092:1
so has part: feature:17745-18092:1:exon

WP_192572907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17745-18092:1:exon

MAGTDC_RS00455
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00455
so part of: sequence
location: complement(18438..18749)
location: region:18438-18749:-1
so has part: feature:18438-18749:-1:exon
subclass of: SO_0000010

79947540
type: Gene
SIO_000068: ncbigene

position:18438:-1
position: 18438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18749:-1
position: 18749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18438-18749:-1:exon

MAGTDC_RS00455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00455
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAIGGHLPMRIEPTGWVNFIVSNQSKAVMSQRADDVGVSGFCLDQHLRVITNPWLFQLCFISVFGSNRSIGTLLFYLIEISFSLKDLVIGTTRRLIYHVLVGQ
SIO_010081: MAGTDC_RS00455
subclass of: SO_0000673
so part of: MAGTDC_RS00455
location: complement(18438..18749)
location: region:18438-18749:-1
so has part: feature:18438-18749:-1:exon

WP_146656562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18438-18749:-1:exon