Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant11, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant11, whole genome shotgun sequence.
sequence version: NZ_CM008771.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008771.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008771.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 22533
topology: circular
so has quality: SO_0000988
location: 1..22533
location: region:1-22533:1
RO_0002162: 573658

NZ_CM008771
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22533:1
position: 22533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22533:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant11
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS00310
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00310
old locus tag: magtdc_93
so part of: sequence
location: 771..4526
location: region:771-4526:1
so has part: feature:771-4526:1:exon
subclass of: SO_0000010

79947513
type: Gene
SIO_000068: ncbigene

position:771:1
position: 771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4526:1
position: 4526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:771-4526:1:exon

MAGTDC_RS00310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00310
old locus tag: magtdc_93
inference: COORDINATES: protein motif:HMM:NF012771.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNTRFNLNTNLVNKIPLNHNDLLNRLYKNILWGCYNNEGIKISKLELILQTLFPLNLKHYSLELIKPSNFVKDEKLTSFGLELNVIRYCLDKDILFVIDQYGLDVLLMDLPRPSKDGILTINGTRKTLITQLIKQSAVLFDRENKTISIKDRDIGYLKVNGPKIIHNNHESDLFTSLLALKTKHSHIFKGTSEIHDVGFYKGTWHRLTWDITKQNEFKYGSRRSLRCKKTITGCIETGNVVIIGVYTKASKTPIVNIDIMLDKNTALNYSSYITITKSLNVLNVINELDEAILEGETEITHEDIKNVELTLTGRIFLNDLTRNHLNFGLEQLTKKDLILIMNEMLFNRNGFKHVDCDVRVIRGSGDVIIDVIKKTLEPILSINDPNVQTDDDMMIGKLFDSVKKIQSDVDKFFGSSNLCQYLDQVNSLSELSHKGKLTCLGEGGLTSQNVEVTIRDTKRWHLAKICPIESPEGQNIGLVTTLSAYANVDVNGYISTGYYKTYNGLINRNIIYLNHFESKRLNVGLTYNRIQEKWTMCLNWNEIKITDRSVIDLSLVSDAQMFSHAVRLIPFLGHNDPTRALMAANMLKQAIPPLNSRPPLVGTGEEYAVMRDTGHNVVARNDGRVVNVDSKRIVVYEPRDQKQRVYILPQSRRSNQDMCQRIRTVVYPGQRLKQGDVIAECQSSCDGEMSLGANLLVAFMCWEGYNFEDSVIISNNVINKGIFKSLHIINLKTKVKQTPSGNEWLSPNITDIPIKYRRCLDSDGIVKVGSNVHEDDVLVGKLAPRSDAKQKKEEIKEICGDELSSDEDINDDNGVITNMEDGDYTFNVGKDGNDELSTELVHNTSLRVPKGIDHATVLEVERSSDGNKNYQDKDLEDYIRCYNVVTKKYVRRCCLLLQISNIKKLFTTSPLTSGNKIIQDGLNLLHKKYLSYLNKLEVNMLSKFNNRLTNENQSDGSKILETIRVKLLVHRSIKVGDKICGRHGNKGVISEIVPKEDMPFMADGTPIDIILNPLGVPSRMNIGQLLETTFGLISYKFGLEFKHVLNMYYKTNDDRILERVIPKLTELYPNINKLTKNMILILLSELSQGVKISCPLFGFPFESCLKDFNNRLSINSNRKIQLYDGKTGLPFISTTNVGIIYIFKLNHLVDNKIHARSTGPYSFVTQQPLKGRNNLGGQRLGEMEVWALQSYGVAYFLNELLSAKCDDMMARHEIQENFLEERPTYNLYQTEGMAVLIKELFSMCIEIEATK
SIO_010081: MAGTDC_RS00310
subclass of: SO_0000673
so part of: MAGTDC_RS00310
location: 771..4526
location: region:771-4526:1
so has part: feature:771-4526:1:exon

WP_146656536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:771-4526:1:exon

MAGTDC_RS00315
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00315
old locus tag: magtdc_94
so part of: sequence
location: 4533..8558
location: region:4533-8558:1
so has part: feature:4533-8558:1:exon
subclass of: SO_0000010

79947514
type: Gene
SIO_000068: ncbigene

position:4533:1
position: 4533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8558:1
position: 8558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4533-8558:1:exon

MAGTDC_RS00315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00315
old locus tag: magtdc_94
inference: COORDINATES: protein motif:HMM:NF016859.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLSVFNKNISNLRFKITSPETILSWSYGEICNADTYDDNGKPIVGGLFCPKIFGFRRRNECLCPTPNLNNKMICQTCGIYLDTDRLQTRSRFGHINLSTPVMHTLFYKPTPTILAELLNMDVEMVQDIIECKLHVIIWSDLNDYRNGQVISTETYRNIWTRNDRCSVASGGQAIMELLSRVQLNKIKTSLIKETQRTKSEELLDKIKNRLEIVECFISNNIRLEWLVIRILPVLPAELRPMIVLDDDTLANSDLNVLYKHIITANNNHLIKTNEIRSNSADEFDSYIEGLISLQKVVDDLIDNSSDVDNPNKYNTKALKSLAEILKGKQGRFRHNILGKRVDYSGRSVIVPGPNLSINECSIPRSMAVELFKPFIYSKLMLKSNLNNKKTIKHVLETDIYLTYKILEEVVSYCPVLLNRAPTLHKLSMRSFWVKLTNEKVIRLHPLVCSGFNADFDGDQMAVHVPLSFNARIEATTLLMADNNVMHPAHGDPCILPSQDMILGLYYMSLTSPEHKDICLSSYTEVHKILFLNKINLHTKIKFRTVVNGKITEILSTPGRLLISELVPSECNFLYEWNYPEFSKQLTFDIIKLVNDKCGSKQMTTFCEGLMRLGFKYATKSGLSLSNSDLVSPSYKKLLLRGIRSRITKSWSKIGNKQEVSMSLSLWPKVLDAVNSNINLEITGYSLKQTPIQMIINSGARGTLSQIQQLIGSRGYIVGFDGKPCRLPILNSYNEGLSLIQFFCCTFSSRRGLIETTLKTASSGYLTRKLVESTREWVISEDDCSTETGLNVKPIMDLDFIKNRLIGRFIAKPILTNKKIIVQRNELITEDNIYKILTNCNDGLWIRSPLTCQARFGICKLCYGIELGSGNMVQHGDSVGVLAAQSIGEPGTQLTLRTFHGLTNIEGKTNRKMIKNCLISPVSGIIKIKDVSCVVSESNDITVVNSNGSLLIIKDDIEIWSYKLPRGTHLLVSNNKHVESEEILCFNCVRSTSLLSLASGRSFSKNLIYYLNIKKETYDITERDKTNVKPNVVKDKMSLIGLDVGKKKQLYYVTVNSKNTFKINPNEKISLFDKILEVTTEDEDEIDITLTEGFERLSKLFDNNNDEDNSSVISPIDGILKHGTDGNGNRLSIIDPININKRPVVYSGLDVKLFIKENNMVKQGQIILHGDHDLSNYAEIYGFNDLFNYFVGIVQEIYGNQGVNVNSKHIEMVLRQMTNTVSISDAGNSPLKVGCCYNWQDVSRINYYIKTLKRKTVLGDRQIVGITETCVNQRSILSAISFQGAIKSIIKAIISNNNYEITRIKDKIMLGKVPSIGTGFINEQKLIEDGMLNKSDPVDGKI
SIO_010081: MAGTDC_RS00315
subclass of: SO_0000673
so part of: MAGTDC_RS00315
location: 4533..8558
location: region:4533-8558:1
so has part: feature:4533-8558:1:exon

WP_146656537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4533-8558:1:exon

MAGTDC_RS00320
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsG
locus tag: MAGTDC_RS00320
old locus tag: magtdc_95
so part of: sequence
location: 8919..9383
location: region:8919-9383:1
so has part: feature:8919-9383:1:exon
subclass of: SO_0000010

79947515
type: Gene
SIO_000068: ncbigene

position:8919:1
position: 8919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9383:1
position: 9383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8919-9383:1:exon

MAGTDC_RS00320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsG
locus tag: MAGTDC_RS00320
old locus tag: magtdc_95
inference: COORDINATES: protein motif:HMM:NF012404.2
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S7
translation: MSRNRKVNNTVFSYSDKCLMLSKLINYIMRDGKKRMAMLILKKSLDYINDRLHINPLKVLYEAVDNVTPYIEVRNMRIGGVSYQIPIDIPVDRRLGLGLRWMVDAAKQRREVTAWLRLAWEIIDSVLRKSSSFKRRETMHNLAKNNQAFAHMGW
SIO_010081: MAGTDC_RS00320
subclass of: SO_0000673
so part of: MAGTDC_RS00320
location: 8919..9383
location: region:8919-9383:1
so has part: feature:8919-9383:1:exon

WP_146656538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8919-9383:1:exon

MAGTDC_RS00325
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: fusA
locus tag: MAGTDC_RS00325
old locus tag: magtdc_96
so part of: sequence
location: 9377..11425
location: region:9377-11425:1
so has part: feature:9377-11425:1:exon
subclass of: SO_0000010

79947516
type: Gene
SIO_000068: ncbigene

position:9377:1
position: 9377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11425:1
position: 11425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9377-11425:1:exon

MAGTDC_RS00325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: fusA
locus tag: MAGTDC_RS00325
old locus tag: magtdc_96
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015272826.1
GO function: GO:0003746 - translation elongation factor activity [Evidence IEA]
GO process: GO:0006414 - translational elongation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: elongation factor G
translation: MVNSNLRKIRNIGIMAHIDAGKTTFTERLLFITGKQHNIGEVHDGNTTMDWMVQEQERGITITSAATSTSWKTDLFTDVRFNVIDTPGHIDFTAEVEKSLRILDGAVIILDASAGVESQTETIWRQANKHSIPRIIFCNKMDKTGSDYFISSNSLINKLSIKPLLLQIPIGTQSEFHGIIDVVNMKAVYWNQNGKDLTYSIMNIPNEYKNVANEQRRLLVDSILEFDHNKITTCLRCNKLDSHSIISLIRLATISGKAFPIMCGSAFKNKAIQPVLDAIVNYLPSPDDRQPVRDSLLTNKLILRFPSNSEPTSMLIFKIMSDIYSGFLCFVRIYSGSVKQGEVVYNIRNNSEQKITKLLKMHANFRTELSHANSGDIISICGIKNSITGDTLCDITSPISLFAIKFPTPVICVALEPDTEHDQEKLINILYKYSLEDPTLSFKINEESGQIMLSGMGELHLDIIIDRILREHNLMLKPNKPQVAYREMLLDKCIEEYTHRKQTGGAGQFAKVKMLFEPTHNDEFEFRSEITGGSIPKEYIPGIKKGLESAIINGPALGYPIIRLKVTLIDGEHHDVDSSILAFEIAAKQCLKQAIQRMGVCILEPIMKVEIFIPDIYIGDVTSDLKARGGHITDQTSINKTGLIKAKISLANTFKYIDTLRSLTKGTGTYFIEFDSYAKLNK
SIO_010081: MAGTDC_RS00325
subclass of: SO_0000673
so part of: MAGTDC_RS00325
location: 9377..11425
location: region:9377-11425:1
so has part: feature:9377-11425:1:exon

WP_146656539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9377-11425:1:exon

MAGTDC_RS05165
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05165
so part of: sequence
location: 12825..12950
location: region:12825-12950:1
so has part: feature:12825-12950:1:exon
subclass of: SO_0000010

79948302
type: Gene
SIO_000068: ncbigene

position:12825:1
position: 12825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12950:1
position: 12950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12825-12950:1:exon

MAGTDC_RS05165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05165
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLTTAADFNEILSKSIKISIPSRYLYWNQTTKGTSKNYINF
SIO_010081: MAGTDC_RS05165
subclass of: SO_0000673
so part of: MAGTDC_RS05165
location: 12825..12950
location: region:12825-12950:1
so has part: feature:12825-12950:1:exon

WP_278046845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12825-12950:1:exon

MAGTDC_RS00330
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rplC
locus tag: MAGTDC_RS00330
old locus tag: magtdc_97
so part of: sequence
location: 12951..13511
location: region:12951-13511:1
so has part: feature:12951-13511:1:exon
subclass of: SO_0000010

79947517
type: Gene
SIO_000068: ncbigene

position:12951:1
position: 12951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13511:1
position: 13511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12951-13511:1:exon

MAGTDC_RS00330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rplC
locus tag: MAGTDC_RS00330
old locus tag: magtdc_97
inference: COORDINATES: protein motif:HMM:NF012518.2
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 50S ribosomal protein L3
translation: MKLVSVKSKMISINGNAATMLDILACVVVSSGLNFIKLGYNKRKLLKNFRDIDVKKIIYVPCFIKTPNEFGSVLDIKDLNTNSTINIRGKTKGRGFTGVIKRYGFSGLSASHGVSLTHRSLGAIGSRQDPGRVWKGKKMAGRMGNVYISLKLIKIVVINKFTCWIIVYGSVPGKNNNILYLQQTKT
SIO_010081: MAGTDC_RS00330
subclass of: SO_0000673
so part of: MAGTDC_RS00330
location: 12951..13511
location: region:12951-13511:1
so has part: feature:12951-13511:1:exon

WP_146656540.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12951-13511:1:exon

MAGTDC_RS00335
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rplD
locus tag: MAGTDC_RS00335
old locus tag: magtdc_98
so part of: sequence
location: 13560..14042
location: region:13560-14042:1
so has part: feature:13560-14042:1:exon
subclass of: SO_0000010

79947518
type: Gene
SIO_000068: ncbigene

position:13560:1
position: 13560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14042:1
position: 14042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13560-14042:1:exon

MAGTDC_RS00335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rplD
locus tag: MAGTDC_RS00335
old locus tag: magtdc_98
inference: COORDINATES: protein motif:HMM:NF012782.2
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 50S ribosomal protein L4
translation: MDKRRWYVSYIKIRSDSEYSNKKLYKQKGMGVARHSTKSVSQFKGGYKYSAIKKIKRSKTNKRYRDIAIRSVLVEKVKDGKLLLINRLTNVRNLVVSGLLIHTSDEDKQIIYATKIGFCCIHWSKLDISSLIKTKQLLFTDLAMNKLCNTLESRWQLITN
SIO_010081: MAGTDC_RS00335
subclass of: SO_0000673
so part of: MAGTDC_RS00335
location: 13560..14042
location: region:13560-14042:1
so has part: feature:13560-14042:1:exon

WP_192572898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13560-14042:1:exon

MAGTDC_RS04075
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04075
so part of: sequence
location: 14021..14185
location: region:14021-14185:1
so has part: feature:14021-14185:1:exon
subclass of: SO_0000010

79948107
type: Gene
SIO_000068: ncbigene

position:14021:1
position: 14021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14185:1
position: 14185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14021-14185:1:exon

MAGTDC_RS04075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04075
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTTDYKLINPTPSAEQNLIQLLNVPKYIKTNQYKPLTRKDICEPSGKNNTERLL
SIO_010081: MAGTDC_RS04075
subclass of: SO_0000673
so part of: MAGTDC_RS04075
location: 14021..14185
location: region:14021-14185:1
so has part: feature:14021-14185:1:exon

WP_192572899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14021-14185:1:exon

MAGTDC_RS00340
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00340
so part of: sequence
location: 15663..15992
location: region:15663-15992:1
so has part: feature:15663-15992:1:exon
subclass of: SO_0000010

79947519
type: Gene
SIO_000068: ncbigene

position:15663:1
position: 15663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15992:1
position: 15992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15663-15992:1:exon

MAGTDC_RS00340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIPHLFYKQQNIHVKDLNVYTLKKLFWSNIKVIVKQTDNPTYHPLVIANRLINETNNIIIMVNIKQISKTLVGTNIVELKVRYSERINRTDVVQTVITYKKDVIANILY
SIO_010081: MAGTDC_RS00340
subclass of: SO_0000673
so part of: MAGTDC_RS00340
location: 15663..15992
location: region:15663-15992:1
so has part: feature:15663-15992:1:exon

WP_146656542.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15663-15992:1:exon

MAGTDC_RS00345
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: rpsQ
locus tag: MAGTDC_RS00345
old locus tag: magtdc_99
so part of: sequence
location: 16477..16722
location: region:16477-16722:1
so has part: feature:16477-16722:1:exon
subclass of: SO_0000010

79947520
type: Gene
SIO_000068: ncbigene

position:16477:1
position: 16477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16722:1
position: 16722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16477-16722:1:exon

MAGTDC_RS00345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: rpsQ
locus tag: MAGTDC_RS00345
old locus tag: magtdc_99
inference: COORDINATES: protein motif:HMM:NF012586.2
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S17
translation: MWNYGINMLVGTIIRDLLTETKVVLVIKRTKRSKKYKKTITSTKKYLVSDKDNRFRIGSKILIKSCSPISKRKSWFIVSMA
SIO_010081: MAGTDC_RS00345
subclass of: SO_0000673
so part of: MAGTDC_RS00345
location: 16477..16722
location: region:16477-16722:1
so has part: feature:16477-16722:1:exon

WP_146656543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16477-16722:1:exon

MAGTDC_RS00350
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00350
old locus tag: magtdc_100
so part of: sequence
location: 16722..17084
location: region:16722-17084:1
so has part: feature:16722-17084:1:exon
subclass of: SO_0000010

79947521
type: Gene
SIO_000068: ncbigene

position:17084:1
position: 17084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16722-17084:1:exon

MAGTDC_RS00350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00350
old locus tag: magtdc_100
inference: COORDINATES: protein motif:HMM:NF012463.2
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: uL14 family ribosomal protein
translation: MILPRSVVKVIDNSGIKFIRCIKITGSTNKRWAKYGELIKASAIVVYPRSKIKQGSVVNALIIRCIKPFNRTLGYIKFNENSVIILSDKLEPIGTRIFGPVLRELKVTNQNIFSLINDVV
SIO_010081: MAGTDC_RS00350
subclass of: SO_0000673
so part of: MAGTDC_RS00350
location: 16722..17084
location: region:16722-17084:1
so has part: feature:16722-17084:1:exon

WP_146656548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16722-17084:1:exon

MAGTDC_RS00355
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00355
so part of: sequence
location: 17341..17580
location: region:17341-17580:1
so has part: feature:17341-17580:1:exon
subclass of: SO_0000010

79947522
type: Gene
SIO_000068: ncbigene

position:17341:1
position: 17341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17580:1
position: 17580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17341-17580:1:exon

MAGTDC_RS00355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00355
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MYICYLRLTKPSYLDVLTTKSNETSNKIGTSVLHLITGFKSVLIEIKSIISGFNDKETSGNRIQVLHYVRRKYILSWIN
SIO_010081: MAGTDC_RS00355
subclass of: SO_0000673
so part of: MAGTDC_RS00355
location: 17341..17580
location: region:17341-17580:1
so has part: feature:17341-17580:1:exon

WP_146656544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17341-17580:1:exon

MAGTDC_RS05170
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05170
so part of: sequence
location: 17659..17814
location: region:17659-17814:1
so has part: feature:17659-17814:1:exon
subclass of: SO_0000010

79948303
type: Gene
SIO_000068: ncbigene

position:17659:1
position: 17659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17814:1
position: 17814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17659-17814:1:exon

MAGTDC_RS05170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MENKDWIDVLETLSCENIGQTGFNITICISALTQVHVVTLLKKIESNFVNI
SIO_010081: MAGTDC_RS05170
subclass of: SO_0000673
so part of: MAGTDC_RS05170
location: 17659..17814
location: region:17659-17814:1
so has part: feature:17659-17814:1:exon

WP_278046846.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17659-17814:1:exon

MAGTDC_RS04080
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04080
so part of: sequence
location: 20116..20280
location: region:20116-20280:1
so has part: feature:20116-20280:1:exon
subclass of: SO_0000010

79948108
type: Gene
SIO_000068: ncbigene

position:20116:1
position: 20116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20280:1
position: 20280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20116-20280:1:exon

MAGTDC_RS04080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04080
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFGISDLCYVKSLDGEIIVTGLMLECNLTSDNTILKMTNLGGKINISNVVFRLK
SIO_010081: MAGTDC_RS04080
subclass of: SO_0000673
so part of: MAGTDC_RS04080
location: 20116..20280
location: region:20116-20280:1
so has part: feature:20116-20280:1:exon

WP_192572901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20116-20280:1:exon

MAGTDC_RS00365
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00365
old locus tag: magtdc_101
so part of: sequence
location: 21026..21718
location: region:21026-21718:1
so has part: feature:21026-21718:1:exon
subclass of: SO_0000010

79947523
type: Gene
SIO_000068: ncbigene

position:21026:1
position: 21026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21718:1
position: 21718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21026-21718:1:exon

MAGTDC_RS00365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00365
old locus tag: magtdc_101
inference: COORDINATES: protein motif:HMM:NF013366.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLLMLQQIKLIPCGYNKFKLGIILNDKNLVQTIGNTLRRVLMSDVVGYAVIGINIDGVYNEVDKINGIKEDVIEVVNNVKRLEFMCQDGRNVFRAVINTSKKGKVLASDIYLPDGVLIFNRNHYICNLGIGIRFRCELVVACSKGYLSASEVQGRYNSCLHGCLVLDVDFNPIKQVSFKIIKHEFNVYSQEEAELIIETNGSVDVVEVIFGCCLNLNKNFDSIRDSLKIS
SIO_010081: MAGTDC_RS00365
subclass of: SO_0000673
so part of: MAGTDC_RS00365
location: 21026..21718
location: region:21026-21718:1
so has part: feature:21026-21718:1:exon

WP_146656545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21026-21718:1:exon

MAGTDC_RS00370
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00370
old locus tag: magtdc_102
so part of: sequence
location: 21724..22056
location: region:21724-22056:1
so has part: feature:21724-22056:1:exon
subclass of: SO_0000010

79947524
type: Gene
SIO_000068: ncbigene

position:21724:1
position: 21724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22056:1
position: 22056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21724-22056:1:exon

MAGTDC_RS00370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00370
old locus tag: magtdc_102
inference: COORDINATES: protein motif:HMM:NF013369.2
GO component: GO:0005840 - ribosome [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: L17 family ribosomal protein
translation: MVRLSKHEVINLIRCFIMTGRLVSTSERLKAVKTDIERILNRIKNIKIDKPQETIRLLRSKLKCGQRFAVLIGYLFSKIKSTNGGYTKLIRLWRRDGDGAVTSILIPSNH
SIO_010081: MAGTDC_RS00370
subclass of: SO_0000673
so part of: MAGTDC_RS00370
location: 21724..22056
location: region:21724-22056:1
so has part: feature:21724-22056:1:exon

WP_146656546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21724-22056:1:exon