Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant10, whole genome shotgun sequence.
type: Entry
definition: Candidatus Hodgkinia cicadicola strain MAGTDC chromosome variant10, whole genome shotgun sequence.
sequence version: NZ_CM008770.1
sequence date: 2023-04-10
sequence: sequence
division: CON
label: NZ_CM008770.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07255135
keyword: WGS
keyword: RefSeq
source: Candidatus Hodgkinia cicadicola
organism: Candidatus Hodgkinia cicadicola
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Candidatus Hodgkinia.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008770.1.\nBacteria and source DNA available from McCutcheon Lab.\n\nThis endosymbiotic bacterium typically consists of a single, highly\npolyploid (a few hundred copies of the genome) chromosome. In this\ncase however, the single chromosome has split into several dozen\nlineages, each with a different reduced version of the ancestral\nsingle chromosome. The chromosomes were named variantX to\ndistinguish them from each other. Some of the chromosomes are\ncomplete circular molecules, while others are likely circular\nmolecules but they still have a run of N's at the end of the\ncomponent contig to close the gap.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.6.2\nExpected Final Version :: yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 16:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 964\nCDSs (total) :: 921\nGenes (coding) :: 887\nCDSs (with protein) :: 887\nGenes (RNA) :: 43\nrRNAs :: 16, 16 (16S, 23S)\ncomplete rRNAs :: 14, 14 (16S, 23S)\npartial rRNAs :: 2, 2 (16S, 23S)\ntRNAs :: 11\nncRNAs :: 0\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 2 of 34\nPseudo Genes (incomplete) :: 32 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 29002
topology: circular
so has quality: SO_0000988
location: 1..29002
location: region:1-29002:1
RO_0002162: 573658

NZ_CM008770
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07255135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Campbell, M.A.
author: Lukasik, P.
author: Simon, C.
author: McCutcheon, J.P.
journal: Submitted (25-SEP-2017) Division of Biological Sciences, University of Montana, 32 Campus Drive, HS104, Missoula, MT 59812, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29002:1
position: 29002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29002:1:source
so part of: sequence
organism: Candidatus Hodgkinia cicadicola
mol type: genomic DNA
strain: MAGTDC
isolation source: bacteriome tissue
host: Magicicada tredecula
chromosome: variant10
country: USA: Marshall County, Kentucky
lat lon: 37.0086 N 88.3308 W
collection date: 2015-06-04

573658
type: Taxonomy
SIO_000068: taxonomy

MAGTDC_RS00245
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00245
old locus tag: magtdc_86
so part of: sequence
location: complement(1359..1874)
location: region:1359-1874:-1
so has part: feature:1359-1874:-1:exon
subclass of: SO_0000010

79947503
type: Gene
SIO_000068: ncbigene

position:1359:-1
position: 1359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1874:-1
position: 1874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1359-1874:-1:exon

MAGTDC_RS00245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00245
old locus tag: magtdc_86
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNCFKLITRDKTGSTPCCKTKRNNFIPGTIKTSNNHVIPILIGNGIMKKLTYKQRLVVVVNKIIMNVILKYYQICNKTRQIQHVEYYQTFYKLSKTLIPIIFVAEDKINKSSTKLLKITSKLIAVSNTDLIPNYIKIMSSDFFTGNKIMFNNLNYRHLTTTSNITMISTIK
SIO_010081: MAGTDC_RS00245
subclass of: SO_0000673
so part of: MAGTDC_RS00245
location: complement(1359..1874)
location: region:1359-1874:-1
so has part: feature:1359-1874:-1:exon

WP_192572894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1359-1874:-1:exon

MAGTDC_RS00255
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00255
old locus tag: magtdc_87
so part of: sequence
location: 4057..4326
location: region:4057-4326:1
so has part: feature:4057-4326:1:exon
subclass of: SO_0000010

79947504
type: Gene
SIO_000068: ncbigene

position:4057:1
position: 4057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4326:1
position: 4326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4057-4326:1:exon

MAGTDC_RS00255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00255
old locus tag: magtdc_87
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLIVSFNKTIITPIVKTKLTSKGVIIPNSNDSKLCVGVVISSNSELKTGDKVLYIRTENLCYNLNSLEVDIVNTSDVVVLFRTSCTEWD
SIO_010081: MAGTDC_RS00255
subclass of: SO_0000673
so part of: MAGTDC_RS00255
location: 4057..4326
location: region:4057-4326:1
so has part: feature:4057-4326:1:exon

WP_146656525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4057-4326:1:exon

MAGTDC_RS00260
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: groL
locus tag: MAGTDC_RS00260
old locus tag: magtdc_88
so part of: sequence
location: 4317..5942
location: region:4317-5942:1
so has part: feature:4317-5942:1:exon
subclass of: SO_0000010

79947505
type: Gene
SIO_000068: ncbigene

position:4317:1
position: 4317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5942:1
position: 5942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4317-5942:1:exon

MAGTDC_RS00260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: groL
locus tag: MAGTDC_RS00260
old locus tag: magtdc_88
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018859571.1
GO function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0006457 - protein folding [Evidence IEA]
note: 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: chaperonin GroEL
translation: MGLMDNCIVFGKEARDGILEGINMVSNVVKVTLGPNGRNVVIDKTDGSPRVTKDGVTVVREINLNGGLMNTGVKMLKEVAVKTNDVVGDGTTTATVLTQMMVNEGLKAVNSGANPIDVRKGMALAVEEVVRILQENSRKVSGLEEIIHVGTIAANGDRRIGLDIGEALQRVGNDGIVTVEETKALESGLELVDGMRFDRGYISRYFIPDQTKTTCDFQHPYVLVCDEKITSIKSVLPVLEIISGTDNSLVIIAEDIEGEALATLLLNKFRGKLKIVGVKSPGFGDRKQQMLEDISLLTGAQIISSGLGLKLEDVTISQLGKATRIVVDKDTTTIIDGLGDKVELRNKIRQIKQQWDNVESEYEKEKLHERLARLTGGIAMIKVGGSTEIEIKEKKDRVEDALNATRSAIHDGIIAGGGTALFWISKKLNIELPNKDQQIGLNIIKESLTIPIKQIIINSGMDPDLILKNIEAENKIAYGYDVRGMKYGDLIVFGIIDPVKVVETALKEAASVAGLVVITEVAIVNKPKQTEGSASKEPSDI
SIO_010081: MAGTDC_RS00260
subclass of: SO_0000673
so part of: MAGTDC_RS00260
location: 4317..5942
location: region:4317-5942:1
so has part: feature:4317-5942:1:exon

WP_278046843.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4317-5942:1:exon

MAGTDC_RS04045
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04045
so part of: sequence
location: complement(6711..6848)
location: region:6711-6848:-1
so has part: feature:6711-6848:-1:exon
subclass of: SO_0000010

79948101
type: Gene
SIO_000068: ncbigene

position:6711:-1
position: 6711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6848:-1
position: 6848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6711-6848:-1:exon

MAGTDC_RS04045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04045
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRSVDIMMGLFESIKYIWTNDVIWLNQMINIGFSSSLGYVYLVID
SIO_010081: MAGTDC_RS04045
subclass of: SO_0000673
so part of: MAGTDC_RS04045
location: complement(6711..6848)
location: region:6711-6848:-1
so has part: feature:6711-6848:-1:exon

WP_192572895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6711-6848:-1:exon

MAGTDC_RS04050
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04050
so part of: sequence
location: complement(7039..7179)
location: region:7039-7179:-1
so has part: feature:7039-7179:-1:exon
subclass of: SO_0000010

79948102
type: Gene
SIO_000068: ncbigene

position:7039:-1
position: 7039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7179:-1
position: 7179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7039-7179:-1:exon

MAGTDC_RS04050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04050
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGTTYVRYSFDCVSLGVGLYDDELMGGYCLNYMLYNPKIGSDNWSI
SIO_010081: MAGTDC_RS04050
subclass of: SO_0000673
so part of: MAGTDC_RS04050
location: complement(7039..7179)
location: region:7039-7179:-1
so has part: feature:7039-7179:-1:exon

WP_192572896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7039-7179:-1:exon

MAGTDC_RS05155
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05155
so part of: sequence
location: 8291..8422
location: region:8291-8422:1
so has part: feature:8291-8422:1:exon
subclass of: SO_0000010

79948300
type: Gene
SIO_000068: ncbigene

position:8291:1
position: 8291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8422:1
position: 8422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8291-8422:1:exon

MAGTDC_RS05155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MITGYLINFNNKNMVTSTKCINNYFDPNVKTITTLSNIHGVNI
SIO_010081: MAGTDC_RS05155
subclass of: SO_0000673
so part of: MAGTDC_RS05155
location: 8291..8422
location: region:8291-8422:1
so has part: feature:8291-8422:1:exon

WP_278046844.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8291-8422:1:exon

MAGTDC_RS00265
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00265
old locus tag: magtdc_89
so part of: sequence
location: 8406..9200
location: region:8406-9200:1
so has part: feature:8406-9200:1:exon
subclass of: SO_0000010

79947506
type: Gene
SIO_000068: ncbigene

position:8406:1
position: 8406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9200:1
position: 9200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8406-9200:1:exon

MAGTDC_RS00265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00265
old locus tag: magtdc_89
inference: COORDINATES: protein motif:HMM:NF012673.2
GO process: GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: inositol monophosphatase family protein
translation: MELTYNFYFKLINAILDNVRCHTSDLGFRNEIEFISKGGGYNPVTIYDKIIESDIIELINLITPKIEVYSEEFGCCPKGSSMWVVDPIDGTKSFVSGSPIWGTLIGLIKDGSFVLGAVDHPVLNERLIAINGKTFYKNKNRDFVLLPKIVDNKMLNQYVIATSSSSHMNLKEKRTFDRLSKKVQHVIHDYDCYAYTLLARGCIDAVIDCNLKPYDFVQLVPILKGVGCEIYDWQGNDTCYSKRIVVSKPGRIRHNVVKILSKAC
SIO_010081: MAGTDC_RS00265
subclass of: SO_0000673
so part of: MAGTDC_RS00265
location: 8406..9200
location: region:8406-9200:1
so has part: feature:8406-9200:1:exon

WP_146656526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8406-9200:1:exon

MAGTDC_RS00270
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
gene: metH
locus tag: MAGTDC_RS00270
old locus tag: magtdc_90
so part of: sequence
location: 9267..12848
location: region:9267-12848:1
so has part: feature:9267-12848:1:exon
subclass of: SO_0000010

79947507
type: Gene
SIO_000068: ncbigene

position:9267:1
position: 9267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12848:1
position: 12848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9267-12848:1:exon

MAGTDC_RS00270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
gene: metH
locus tag: MAGTDC_RS00270
old locus tag: magtdc_90
EC number: 2.1.1.13
inference: COORDINATES: protein motif:HMM:TIGR02082.1
GO function: GO:0008705 - methionine synthase activity [Evidence IEA]
GO process: GO:0009086 - methionine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: methionine synthase
translation: MNNTSSNKTNAYMALLKLGRKRRLILDGAMGTQIQKFKLKDRHYGGKQNRGNNDILNITQPRVIEKIHQSYLEVGVDIIETNTFNSNRISQSDYNNNWSCIELNKRAVLIAKRARLKYSFYNKRRVFVAGSVGPTNKSLTVPSNALKPAYRDVSFDEMVTSYKQQINTLLNMDVNILLIETVFDTINAKAALFAYLEVCRKLKTEHALVISVTISDASGRTLSGQTLEAFWHSVSHAKPLSVGLNCALGPEHLKQYASELSSIVGKSIWVYPNAGFPNEEGKYTQNPDDFAKQIKKLIKHACVLGGCCGTTPKHISELIKFKLSNKPSKVVDVSTKSNCLFLSGLEPMKINRDGFYEIGERANVSGSSRFKHMITSGNYERALDIVRQQVVHGAKIIDINMDDALLDSEVEISKFLNLINTEPDLSALPIMIDSSKWGTLLIGMKHIQGRGIVNSISLKDGDKQFIDKARLIKMHGCLPITIAFDERGQASNVEQRLEICKRVHGLLTREVGFTDEEVIIDLNTFAIATGITDHDRNALELINSIKLISIIYPKINLVLGISNLSFSFRGNNKIRESLHCMFLRYAKLVGLNLGIINVQNQISYSKLSDKIRNLCKSLILNNVQVSIEEILNVFGTRFNVLSNGENGSNWRKWDVKSRVIHAVIGGIDKYIEQDSVELAKDIGALRVIEEVLMEGMDIIGKLFGDGKMFLPQMIKAARVMKKAVTAITPLIKIGSTKNNNVIVMATVKGDVHDIGKNIVSTVLSCNNYQIIDLGIMVSANEIVQAAIKYKADAIGISGLISPSLDEMVKVARLLQRKSLDIPLLVGGATTSKLHTAIKLYPEYPNGIVIHVKDASKAVDVLAKLFKGSRSTYIKTLKSDYELITDIYNRSKLQRCRIPFETSLNRSFKFNKRVVPNVNFIGTKTSCVGNLKGLRIKHGFNESCVVVAKITTLQKKMFNKMISERWVSIRRTIGMMKAVNRHGSICVLNSNNVLIAKLPMLRQQQNTNLCLSLSDFVDGNNDNISIYCCVVGIESTLIHRYFNDRNRLQCAYVFKTICDNLVESCSKSTYDTIRYHVWAYACKRSHSDIEGRRTGIRPAPGYPIIPDHGIKHNLFRILSLKSNIGLMISDVWSFIPQTSILSMVVANPHAVYFGIKYIDKQQIISYCKQLKQSVKSVERSLSPLICYVPESMLT
SIO_010081: MAGTDC_RS00270
subclass of: SO_0000673
so part of: MAGTDC_RS00270
location: 9267..12848
location: region:9267-12848:1
so has part: feature:9267-12848:1:exon

WP_146656527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9267-12848:1:exon

MAGTDC_RS00275
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00275
so part of: sequence
location: complement(12918..13115)
location: region:12918-13115:-1
so has part: feature:12918-13115:-1:exon
subclass of: SO_0000010

79947508
type: Gene
SIO_000068: ncbigene

position:12918:-1
position: 12918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13115:-1
position: 13115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12918-13115:-1:exon

MAGTDC_RS00275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00275
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGWYNRLIITNSMLVLVMFGIPMGWQQGRSRCWIVCLQMLWLQSKIINQLNKQMEQWIVQEDLNC
SIO_010081: MAGTDC_RS00275
subclass of: SO_0000673
so part of: MAGTDC_RS00275
location: complement(12918..13115)
location: region:12918-13115:-1
so has part: feature:12918-13115:-1:exon

WP_146656528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12918-13115:-1:exon

MAGTDC_RS04055
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04055
so part of: sequence
location: 13262..13453
location: region:13262-13453:1
so has part: feature:13262-13453:1:exon
subclass of: SO_0000010

79948103
type: Gene
SIO_000068: ncbigene

position:13262:1
position: 13262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13453:1
position: 13453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13262-13453:1:exon

MAGTDC_RS04055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVILHLNRSDQMFFILITQLPFRCSEPSNTDINSFNIRTDCIRLFKLQRSNTIMWSIDSVSGN
SIO_010081: MAGTDC_RS04055
subclass of: SO_0000673
so part of: MAGTDC_RS04055
location: 13262..13453
location: region:13262-13453:1
so has part: feature:13262-13453:1:exon

WP_192572897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13262-13453:1:exon

MAGTDC_RS05160
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS05160
so part of: sequence
location: complement(13534..13743)
location: region:13534-13743:-1
so has part: feature:13534-13743:-1:exon
subclass of: SO_0000010

79948301
type: Gene
SIO_000068: ncbigene

position:13534:-1
position: 13534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13743:-1
position: 13743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13534-13743:-1:exon

MAGTDC_RS05160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS05160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGRVGFNSNKFSLDMALETNYERMERWKQIITTELIKPIRLSIEYGGNNIYMNNRILIGRFLTYIQWYI
SIO_010081: MAGTDC_RS05160
subclass of: SO_0000673
so part of: MAGTDC_RS05160
location: complement(13534..13743)
location: region:13534-13743:-1
so has part: feature:13534-13743:-1:exon

WP_146656530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13534-13743:-1:exon

MAGTDC_RS04060
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04060
so part of: sequence
location: 15187..15351
location: region:15187-15351:1
so has part: feature:15187-15351:1:exon
subclass of: SO_0000010

79948104
type: Gene
SIO_000068: ncbigene

position:15187:1
position: 15187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15351:1
position: 15351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15187-15351:1:exon

MAGTDC_RS04060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTINPKQHPVLLIYKNIPMIQMKTNETTEMLRVLIIGSSDWSLRFKRNKIPTPN
SIO_010081: MAGTDC_RS04060
subclass of: SO_0000673
so part of: MAGTDC_RS04060
location: 15187..15351
location: region:15187-15351:1
so has part: feature:15187-15351:1:exon

WP_192572890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15187-15351:1:exon

MAGTDC_RS00290
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00290
old locus tag: magtdc_91
so part of: sequence
location: 16107..20033
location: region:16107-20033:1
so has part: feature:16107-20033:1:exon
subclass of: SO_0000010

79947509
type: Gene
SIO_000068: ncbigene

position:16107:1
position: 16107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20033:1
position: 20033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16107-20033:1:exon

MAGTDC_RS00290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00290
old locus tag: magtdc_91
inference: COORDINATES: protein motif:HMM:NF012771.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKDRISLSGIVSNKPVTNLREGVQKRLYNNVLWGCYNNEGIKISKLGLNIQGLFPFSIGCWTLEYGRIEIYILSEISNGFDLILDVIRYQSYKNITFIPQRSELNMSLVILPTLMRDNAVLVDGVKKTLVLQLIRNISVVFDRDNEVINMVTRSSTHLKIQGSRIKYGNCNSDLFATMLLLKSKYSHILKNISDLTHLVYYKGRWMKFDWKWSSLDISTSKYGRKRSSRHVKNIVGCCYKNSVVCSCFVVNQLGNVIVNMGDKLDLDINLVTRHIDVLRITETSKPFVLKLFKHIGRLISSNLCYESDIDSKTIRDVDLTLIGRCTLNDITCNNQDFGLDLLTKKDLVSLWTKHTIGSTSFNSINCDIKIIKGSGDYLTDIIYNYLASVLNSQVVEQSLEYPEERSTIDDNNVVIKTLLESSDRIQKHVDKCFNSSSRCQYLDQVNSLSELSHKNKLICMGEGGLTQQNADNYARDTKRWHLAKICPIESPEGQNIGLILSLTTYANVDVNGHIITGYFKTYNGLISNNVVYLNYYECKNLKVSMSHRNDSNKWSLCLYQDTTIVVDKRSVDLTLMTEAQVFSSAVCLIPFLGHNDPTRALMAANMQKQAIPLLKPQVPLIGTGEENNVMRNTGDNVTAINDGMVTAVVSNKIIIYESNKPKHRVYTLPTIEKTNQETCQRIRTVVNPGQMVRSGDVIAECQSSCNGEMSLGSNLLVAFMCWHGYNFEDSVILSENVINKGIFKSIHIIDLESKVMKTKHGDEWLSADIIEIPMKYRKHLDPNGIVKVGSNVQEGDVLVGKLVLRDDEGGNRDVLLDVHEVVKKPQRCYNKVIKIGTDVGMDESDELDDGSEQVIEDGGNKLDVGGLISDIGDDGGGWSVDSACDDEEEGCSIDLSSNVSLRVPNGIEHATVIEVKRIKLNEGNDGYDGAYEECLCHYNMVTNKYIKRCSSLLQRNMADYLSIKLPFTSEDNYIRNALSFLFKHYLNYIHKIGDILLDKLTKRLSSNDPNDESRVLEVIKIKLFMIKSIKVGDKICGRHGNKGVISRIVPKEDMPFMADGTPIDIILNPLGVPSRMNIGQILEANFGLISYKLGLEFKNILNMYYKTNDDRILEQVIPKLTELYPNINNLTKDMILVLLSELSQGVKISCPLFNFSFEPCLKDFNKRLTIDLSGKLQLYDGVSGLPFKNKTTVGIIYIFKLNHLVDDKIHARSTGPYSIVTQQPLKGKSHKGGQRLGEMEVWALQSYGASYFLRELITVKCDDMLARSELKTNIQHGNLKYKAYRNEGVFVLIKELFAMCIDIKLKIE
SIO_010081: MAGTDC_RS00290
subclass of: SO_0000673
so part of: MAGTDC_RS00290
location: 16107..20033
location: region:16107-20033:1
so has part: feature:16107-20033:1:exon

WP_146656531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16107-20033:1:exon

MAGTDC_RS00295
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00295
old locus tag: magtdc_92
so part of: sequence
location: 20043..24035
location: region:20043-24035:1
so has part: feature:20043-24035:1:exon
subclass of: SO_0000010

79947510
type: Gene
SIO_000068: ncbigene

position:20043:1
position: 20043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24035:1
position: 24035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20043-24035:1:exon

MAGTDC_RS00295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00295
old locus tag: magtdc_92
inference: COORDINATES: protein motif:HMM:NF016859.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MFGKDILSIKFEIASSETILSWSYGEVRNGNSFDDDGKPIMDGLFCPKIFGSRNKTECLCKTPTLTQSFDCMVCHVYLGGNTTKTRSRFGHISLATPMVHTLFYKTMPNILSSLLNVDVERVRDLVRCKLHVIRRCDTGEFKRGQIISREIYSKLWMKTESYEVESSGNAITLLLSMIQLKELKRSLIDSKRNVKSIEILNDVNDKIEIVDWVINNKMSLNLMVINVLPVLPAELRPSVVLDDNTKASSDLNELYKGVIDANNVVIGNIERIKHGMVGFNEYVMSIERLQQSVDSLIDNSRSLDEPVGYNNGALKSLVEMLKGKSGRFRHNVLGKRVDYSGRSVIVPGPDLSINECAIPRSMAAELFKPFIHSKLMLEHGIRGQGNTRYLLDCDRQMVYKILEEIIKYCPVLLNRAPTLHKLSMRAFWVKLTNEKVIRLHPLVCSGFNADFDGDQMAVHVPLSLKARIEATTLLMAGNNVFHPAHGDPCILPSQDMILGLYYMSLTSSEHSDIHLSSYVEVTKALVHGKISLHTKVKFTTIKNNIRVTIFTTPGRLLISELVPSSCNFIYEWDDPELTKQFIHDVIIMVNEKCGRQQMVVFCERLMKIGFKYVTRSGLSLSRSEFDTSSYKKELLNHVRSVINKSWSDKLDKIKLPTFSKIWHKMLTDVYNNINLETYSNSLNQTAIQMIVNSGARGTVSQVQQLLGSKGYVVDFNEQQSKLPILNSYNEGLSLIQLFCCTYSSRRGLMDTALKTASSGYLTRKLVETTREWVIDEMDCHTKDGLCVNPVIDLDFIKNRLIGRFLLRDILSNRMVIARKNELISVTNVSKILTCCGNQLWIRSPLTCQATSGVCKLCYGIELSSGDIVQRGDSVGVLAAQSIGEPGTQLTLRTFHGLTEADHKKQTQDLEKCLTSPFSGIIKIEYLSCVCSTDLDIIVTTSKCILSIIQNTNKIRSYKLSRGSRLLVHNNDCVNVGEVLCFNCVESNTILVLTNGIITFECLKYGLNLNRSNNNRNLIGRNIKTKLLANKIPLICLNVGKRIKLCCSSVWDKINFIVKPGLNVNAFGVLFEVVSGYKPINRITLTEGFERLSKLLDNSIAEDNNSVICNTDSIPRYGTDGNGNGIFIIDPMRLDEWPLIFSGVNVGPFTNNNKMMKRGTVVMSGETDLSNYADAYGYNGLYNYFIEIIQEIYNVQGVNVNSKHIEMVLRQMMNIINISDPGDSTLGIGSDHDWQDFARINKYVSILCGRLAVGRRKIIGVTQGCIDGNSILSAISFQGTIKIIIKAILSGIDYIVTDIKDRMILGKLPLIGTGLTTSKHKKMKLLQQPGS
SIO_010081: MAGTDC_RS00295
subclass of: SO_0000673
so part of: MAGTDC_RS00295
location: 20043..24035
location: region:20043-24035:1
so has part: feature:20043-24035:1:exon

WP_146656532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20043-24035:1:exon

MAGTDC_RS00300
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00300
so part of: sequence
location: 24889..25113
location: region:24889-25113:1
so has part: feature:24889-25113:1:exon
subclass of: SO_0000010

79947511
type: Gene
SIO_000068: ncbigene

position:24889:1
position: 24889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25113:1
position: 25113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24889-25113:1:exon

MAGTDC_RS00300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLSPISSMLWLLADYRWLVFHMFVSLESFDAVCEQEDEREYYENSDEEVDDDDEDYEEYEEDGSEHGVNKGTDV
SIO_010081: MAGTDC_RS00300
subclass of: SO_0000673
so part of: MAGTDC_RS00300
location: 24889..25113
location: region:24889-25113:1
so has part: feature:24889-25113:1:exon

WP_192572891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24889-25113:1:exon

MAGTDC_RS00305
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS00305
so part of: sequence
location: 25520..25699
location: region:25520-25699:1
so has part: feature:25520-25699:1:exon
subclass of: SO_0000010

79947512
type: Gene
SIO_000068: ncbigene

position:25520:1
position: 25520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25699:1
position: 25699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25520-25699:1:exon

MAGTDC_RS00305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS00305
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MYLVNGININVPCLHQAKWSYVTYLILVIPSTVYLIKRRNIWVVPDDIRVPMLGWSLRL
SIO_010081: MAGTDC_RS00305
subclass of: SO_0000673
so part of: MAGTDC_RS00305
location: 25520..25699
location: region:25520-25699:1
so has part: feature:25520-25699:1:exon

WP_146656534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25520-25699:1:exon

MAGTDC_RS04065
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04065
so part of: sequence
location: complement(25751..25912)
location: region:25751-25912:-1
so has part: feature:25751-25912:-1:exon
subclass of: SO_0000010

79948105
type: Gene
SIO_000068: ncbigene

position:25751:-1
position: 25751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25912:-1
position: 25912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25751-25912:-1:exon

MAGTDC_RS04065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04065
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MILMDTKRIIRSNRTVLSIDLKPVISMNVGTDYLNHLWNIGIFGSVTTLWSGC
SIO_010081: MAGTDC_RS04065
subclass of: SO_0000673
so part of: MAGTDC_RS04065
location: complement(25751..25912)
location: region:25751-25912:-1
so has part: feature:25751-25912:-1:exon

WP_278046842.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25751-25912:-1:exon

MAGTDC_RS04070
type: Gene
subclass of: SO_0000704
RO_0002162: 573658
locus tag: MAGTDC_RS04070
so part of: sequence
location: complement(28141..28284)
location: region:28141-28284:-1
so has part: feature:28141-28284:-1:exon
subclass of: SO_0000010

79948106
type: Gene
SIO_000068: ncbigene

position:28141:-1
position: 28141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28284:-1
position: 28284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28141-28284:-1:exon

MAGTDC_RS04070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 573658
locus tag: MAGTDC_RS04070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGVVNEQRSYKSDNWNIQWIREISNTTMFQSNLKYKCLENKTTSCKL
SIO_010081: MAGTDC_RS04070
subclass of: SO_0000673
so part of: MAGTDC_RS04070
location: complement(28141..28284)
location: region:28141-28284:-1
so has part: feature:28141-28284:-1:exon

WP_192572893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28141-28284:-1:exon