Pseudodesulfovibrio profundus strain 500-1 plasmid pbDPRO, complete sequence.
Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae.
Submitted (08-SEP-2017) Genoscope CEA, 2 rue Gaston Cremieux CP5706 91057 Evry cedex, France
REFSEQ INFORMATION: The reference sequence is identical to\nLT907977.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 02:39:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,998\nCDSs (total) :: 3,927\nGenes (coding) :: 3,902\nCDSs (with protein) :: 3,902\nGenes (RNA) :: 71\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 4 of 25\nPseudo Genes (incomplete) :: 20 of 25\nPseudo Genes (internal stop) :: 5 of 25\nPseudo Genes (multiple problems) :: 4 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudodesulfovibrio profundus
COORDINATES: protein motif:HMM:NF012974.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
DnaB-like helicase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF019377.2
COORDINATES: protein motif:HMM:NF014414.2
COORDINATES: protein motif:HMM:NF018152.2
COORDINATES: protein motif:HMM:NF015354.2