Pseudodesulfovibrio profundus strain 500-1 plasmid paDPRO, complete sequence.
Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae.
Submitted (08-SEP-2017) Genoscope CEA, 2 rue Gaston Cremieux CP5706 91057 Evry cedex, France
REFSEQ INFORMATION: The reference sequence is identical to\nLT907976.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 02:39:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,998\nCDSs (total) :: 3,927\nGenes (coding) :: 3,902\nCDSs (with protein) :: 3,902\nGenes (RNA) :: 71\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 4 of 25\nPseudo Genes (incomplete) :: 20 of 25\nPseudo Genes (internal stop) :: 5 of 25\nPseudo Genes (multiple problems) :: 4 of 25\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudodesulfovibrio profundus
COORDINATES: similar to AA sequence:RefSeq:WP_076612068.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022007.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017011.2
capsular polysaccharide biosynthesis protein
COORDINATES: protein motif:HMM:NF027901.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_018628603.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF017522.2
TylF/MycF/NovP-related O-methyltransferase
sulfotransferase family 2 domain-containing protein
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:NF025217.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012695.2
COORDINATES: similar to AA sequence:RefSeq:WP_016786473.1
COORDINATES: protein motif:HMM:NF024244.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_008904918.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558281.1
COORDINATES: similar to AA sequence:RefSeq:WP_003038789.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1595-like element ISDae1 family transposase
COORDINATES: protein motif:HMM:NF026041.2
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: protein motif:HMM:NF021165.2
COORDINATES: protein motif:HMM:NF033592.1
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015413585.1
COORDINATES: similar to AA sequence:RefSeq:WP_013513348.1
COORDINATES: similar to AA sequence:RefSeq:WP_016971099.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018264009.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF013235.2