Pseudomonas amygdali pv. tabaci str. ATCC 11528 plasmid pTab1, complete sequence.
Pseudomonas amygdali pv. tabaci str. ATCC 11528 (Pseudomonas syringae pv. tabaci str. ATCC 11528)
Pseudomonas amygdali pv. tabaci str. ATCC 11528
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas amygdali.
Complete genome sequence for Pseudomonas syringae pv. tabaci ATCC11528
Submitted (08-AUG-2019) Plant Sciences, University of Arizona, School of Plant Sciences, Tucson, AZ 857121, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP042805.1.\nBacteria and source DNA available from David Baltrus.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 07-JUL-2019\nAssembly Method :: unicycler v. 0.4.8\nAssembly Name :: UA_Pta_2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/14/2022 19:44:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,515\nCDSs (total) :: 5,430\nGenes (coding) :: 5,329\nCDSs (with protein) :: 5,329\nGenes (RNA) :: 85\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 4\nPseudo Genes (total) :: 101\nCDSs (without protein) :: 101\nPseudo Genes (ambiguous residues) :: 0 of 101\nPseudo Genes (frameshifted) :: 47 of 101\nPseudo Genes (incomplete) :: 60 of 101\nPseudo Genes (internal stop) :: 25 of 101\nPseudo Genes (multiple problems) :: 25 of 101\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003373511.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002556085.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279392.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016569387.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782529.1
COORDINATES: similar to AA sequence:RefSeq:WP_020304503.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569389.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569390.1
COORDINATES: similar to AA sequence:RefSeq:WP_019582109.1
COORDINATES: similar to AA sequence:RefSeq:WP_010217029.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782526.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782525.1
COORDINATES: similar to AA sequence:RefSeq:WP_020304266.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011267056.1
COORDINATES: similar to AA sequence:RefSeq:WP_017278811.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007163124.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
heavy metal response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_005782520.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005782519.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782518.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010217025.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782516.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005782515.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005782514.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782512.1
GO:0006825 - copper ion transport [Evidence IEA]
copper homeostasis membrane protein CopD
COORDINATES: similar to AA sequence:RefSeq:WP_000025662.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: similar to AA sequence:RefSeq:WP_008151328.1
COORDINATES: similar to AA sequence:RefSeq:WP_000925242.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_004374659.1
co-regulatory protein PtrA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005782500.1
COORDINATES: similar to AA sequence:RefSeq:WP_007906048.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017279408.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782495.1
COORDINATES: similar to AA sequence:RefSeq:WP_003436798.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019648569.1
polyamine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017279418.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782487.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668202.1
transcription termination/antitermination NusG family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016569404.1
COORDINATES: similar to AA sequence:RefSeq:WP_003407112.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019334638.1
COORDINATES: similar to AA sequence:RefSeq:WP_011282553.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_003407107.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666688.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005782472.1
COORDINATES: similar to AA sequence:RefSeq:WP_010199857.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569412.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004667049.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_017684943.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782462.1
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011282545.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782454.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782456.1
COORDINATES: similar to AA sequence:RefSeq:WP_017684962.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019331447.1
COORDINATES: similar to AA sequence:RefSeq:WP_011282515.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_001262004.1
COORDINATES: similar to AA sequence:RefSeq:WP_017700336.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782557.1
COORDINATES: similar to AA sequence:RefSeq:WP_003436834.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_016569421.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020303948.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279381.1
COORDINATES: similar to AA sequence:RefSeq:WP_003436838.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569425.1
COORDINATES: similar to AA sequence:RefSeq:WP_004667003.1
COORDINATES: similar to AA sequence:RefSeq:WP_010217615.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569428.1
COORDINATES: similar to AA sequence:RefSeq:WP_003407061.1