Asticcacaulis excentricus CB 48 plasmid pASTEX01, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.
Complete sequence of plasmid1 of Asticcacaulis excentricus CB 48
Submitted (16-DEC-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002397.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4085008\nSource DNA and organism available from Yves V. Brun\n(ybrun@indiana.edu)\nContacts: Yves V. Brun (ybrun@indiana.edu)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Asticcacaulis excentricus CB 48\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Fresh water\nnum_replicons :: 4\nref_biomaterial :: CB 48, AC 48, ATCC 15261, DSM 4724, NCIB\n 9791\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi02052\nType Strain :: Yes\nGreengenes ID :: 24445\nIsolation Site :: Pondwater\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 02:00:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,860\nCDSs (total) :: 3,798\nGenes (coding) :: 3,768\nCDSs (with protein) :: 3,768\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 30\nCDSs (without protein) :: 30\nPseudo Genes (ambiguous residues) :: 0 of 30\nPseudo Genes (frameshifted) :: 3 of 30\nPseudo Genes (incomplete) :: 28 of 30\nPseudo Genes (internal stop) :: 3 of 30\nPseudo Genes (multiple problems) :: 4 of 30\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018083667.1
GO:0016791 - phosphatase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006271929.1
COORDINATES: similar to AA sequence:RefSeq:WP_013639882.1
COORDINATES: protein motif:HMM:NF023338.2
COORDINATES: protein motif:HMM:NF015685.2
GO:0033856 - pyridoxine 5'-phosphate synthase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019517815.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018082017.1
COORDINATES: similar to AA sequence:RefSeq:WP_017979823.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015585.2
COORDINATES: protein motif:HMM:TIGR01782.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011543300.1
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024120.2
glycosyl hydrolase family 28-related protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006271649.1
COORDINATES: similar to AA sequence:RefSeq:WP_006271648.1
COORDINATES: protein motif:HMM:NF019350.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007163677.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007163678.1
COORDINATES: similar to AA sequence:RefSeq:WP_007163679.1
COORDINATES: similar to AA sequence:RefSeq:WP_006270897.1
COORDINATES: similar to AA sequence:RefSeq:WP_005663164.1
COORDINATES: similar to AA sequence:RefSeq:WP_006270901.1
COORDINATES: similar to AA sequence:RefSeq:WP_013481034.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_013480863.1
COORDINATES: protein motif:HMM:NF017263.2
COORDINATES: similar to AA sequence:RefSeq:WP_006273947.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_006273948.1
COORDINATES: similar to AA sequence:RefSeq:WP_018083616.1
COORDINATES: similar to AA sequence:RefSeq:WP_013078902.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019848081.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018236490.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006274849.1
COORDINATES: similar to AA sequence:RefSeq:WP_006274848.1
GO:0008465 - glycerate dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006023267.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006958405.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018079722.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980700.1
COORDINATES: similar to AA sequence:RefSeq:WP_013831354.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010544511.1
COORDINATES: similar to AA sequence:RefSeq:WP_010544644.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011647179.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019847840.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018082263.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_018082262.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019847843.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:YP_002516727.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013080232.1
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_002516277.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006275519.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006275520.1
COORDINATES: similar to AA sequence:RefSeq:WP_010919179.1
GO:0102662 - malonate-semialdehyde dehydrogenase (acetylating, NAD+) activity [Evidence IEA]
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_017876036.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_018083228.1
cytochrome o ubiquinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_018083229.1
cytochrome o ubiquinol oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_018083230.1
COORDINATES: similar to AA sequence:RefSeq:WP_015458551.1
COORDINATES: similar to AA sequence:RefSeq:WP_006271431.1
COORDINATES: protein motif:HMM:NF017044.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013479619.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368855.1
GO:0047487 - oligogalacturonide lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019113.2
COORDINATES: similar to AA sequence:RefSeq:WP_004619286.1
COORDINATES: similar to AA sequence:RefSeq:WP_007642616.1
GO:0004650 - polygalacturonase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007666514.1
GO:0030570 - pectate lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019831677.1
COORDINATES: similar to AA sequence:RefSeq:WP_018081112.1
COORDINATES: similar to AA sequence:RefSeq:WP_010337256.1
GO:0004565 - beta-galactosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007673445.1
COORDINATES: protein motif:HMM:NF025965.2
COORDINATES: similar to AA sequence:RefSeq:YP_002515983.1
COORDINATES: similar to AA sequence:RefSeq:WP_013480849.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006275522.1
COORDINATES: protein motif:HMM:NF039455.1
COORDINATES: similar to AA sequence:RefSeq:WP_019370092.1
COORDINATES: protein motif:HMM:NF015722.2
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013481060.1
COORDINATES: similar to AA sequence:RefSeq:WP_013078968.1
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006271795.1
COORDINATES: similar to AA sequence:RefSeq:WP_013079028.1
GO:0046556 - alpha-L-arabinofuranosidase activity [Evidence IEA]
GO:0046373 - L-arabinose metabolic process [Evidence IEA]
alpha-L-arabinofuranosidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010335578.1
COORDINATES: similar to AA sequence:RefSeq:WP_013078956.1
COORDINATES: similar to AA sequence:RefSeq:WP_018082273.1
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018082272.1
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018082271.1
COORDINATES: similar to AA sequence:RefSeq:WP_013078957.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451645.1
COORDINATES: protein motif:HMM:NF025851.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_013481063.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018084044.1
COORDINATES: similar to AA sequence:RefSeq:WP_006272683.1
COORDINATES: similar to AA sequence:RefSeq:WP_012652292.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018079935.1
COORDINATES: similar to AA sequence:RefSeq:WP_006272842.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013479820.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011143747.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: similar to AA sequence:RefSeq:WP_018083664.1
COORDINATES: similar to AA sequence:RefSeq:WP_018084060.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024770.2
COORDINATES: similar to AA sequence:RefSeq:WP_006274799.1
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: similar to AA sequence:RefSeq:WP_008443174.1
COORDINATES: protein motif:HMM:NF024571.2
COORDINATES: protein motif:HMM:NF025019.2
COORDINATES: similar to AA sequence:RefSeq:WP_008831939.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008070926.1
GO:0004847 - urea carboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012288444.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007014219.1
COORDINATES: similar to AA sequence:RefSeq:WP_010543569.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831946.1
putative urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014763474.1
COORDINATES: similar to AA sequence:RefSeq:WP_012288448.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889947.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018516793.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559675.1
COORDINATES: similar to AA sequence:RefSeq:WP_015093063.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012222311.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012650504.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018855502.1
COORDINATES: similar to AA sequence:RefSeq:WP_013090261.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015722666.1
COORDINATES: protein motif:HMM:TIGR01845.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018239943.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694464.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015828630.1
COORDINATES: similar to AA sequence:RefSeq:WP_006270998.1
GO:0047448 - 5-dehydro-4-deoxyglucarate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015828331.1
COORDINATES: similar to AA sequence:RefSeq:WP_006271000.1
COORDINATES: similar to AA sequence:RefSeq:WP_014106734.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630644.1
COORDINATES: similar to AA sequence:RefSeq:WP_010542921.1
COORDINATES: similar to AA sequence:RefSeq:WP_006271033.1
COORDINATES: similar to AA sequence:RefSeq:WP_015458668.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015458667.1
GO:0008869 - galactonate dehydratase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015458660.1
COORDINATES: similar to AA sequence:RefSeq:WP_020708717.1
GO:0051119 - sugar transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006270847.1
glutathionylspermidine synthase family protein
COORDINATES: protein motif:HMM:NF018408.2
COORDINATES: similar to AA sequence:RefSeq:WP_006270849.1
COORDINATES: similar to AA sequence:RefSeq:WP_009284763.1
COORDINATES: similar to AA sequence:RefSeq:WP_010215877.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819972.1
COORDINATES: similar to AA sequence:RefSeq:WP_002803088.1
COORDINATES: similar to AA sequence:RefSeq:WP_002979586.1
COORDINATES: similar to AA sequence:RefSeq:WP_015178434.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: similar to AA sequence:RefSeq:WP_008260796.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_008259899.1
COORDINATES: similar to AA sequence:RefSeq:WP_012284825.1
COORDINATES: protein motif:HMM:NF021364.2
COORDINATES: similar to AA sequence:RefSeq:WP_007856538.1
COORDINATES: similar to AA sequence:RefSeq:WP_007712145.1
COORDINATES: similar to AA sequence:RefSeq:WP_006272985.1
COORDINATES: similar to AA sequence:RefSeq:WP_010544106.1
COORDINATES: similar to AA sequence:RefSeq:WP_018080980.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018264.2
COORDINATES: similar to AA sequence:RefSeq:WP_018113055.1