Archaeoglobus profundus DSM 5631 plasmid pArcpr01, complete sequence.
Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.
Complete genome sequence of Archaeoglobus profundus type strain (AV18)
The complete plasmid of Archaeoglobus profundus DSM 5631
Submitted (07-JAN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001858.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4085236\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Archaeoglobus profundus Av18, DSM 5631\nCulture Collection ID :: DSM 5631, JCM 9629, NBRC 100127\nGOLD Stamp ID :: Gi02909\nGreengenes ID :: 71597\nIsolation Site :: \"Deep sea hydrothermal vents; Mexico, Gulf\n of California, Guaymas Basin\"\nIsolation Country :: Mexico\nOxygen Requirement :: Anaerobe\nMotility :: Motile\nTemperature Range :: Hyperthermophile\nTemperature Optimum :: 85C\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Deep sea, Hydrothermal vent, Marine\nEnergy Source :: Chemolithoautotroph\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 01:18:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,893\nCDSs (total) :: 1,841\nGenes (coding) :: 1,833\nCDSs (with protein) :: 1,833\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 2 of 8\nPseudo Genes (incomplete) :: 4 of 8\nPseudo Genes (internal stop) :: 3 of 8\nPseudo Genes (multiple problems) :: 1 of 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.