Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequence.
type: Entry
definition: Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequence.
sequence version: NC_013862.1
sequence date: 2022-10-12
sequence: sequence
division: CON
label: NC_013862.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598487
keyword: RefSeq
source: Allochromatium vinosum DSM 180
organism: Allochromatium vinosum DSM 180
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.
reference: 1
references: 22675582
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001898.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4084488\nSource DNA and bacteria available from Christiane Dahl\n(ChDahl@uni-bonn.de)\nContacts: Christiane Dahl (ChDahl@uni-bonn.de)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Allochromatium vinosum DSM 180\nCulture Collection ID :: DSM 180, ATCC 17899\nGOLD Stamp ID :: Gi02104\nIsolation Site :: Ditch water\nOxygen Requirement :: Anaerobe\nCell Shape :: Rod-shaped\nMotility :: Motile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 25C\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Fresh water\nEnergy Source :: Phototroph\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/12/2022 01:20:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures …

sequence
subclass of: SO_0000155
sequence length: 39929
topology: circular
so has quality: SO_0000988
location: 1..39929
location: region:1-39929:1
RO_0002162: 572477

NC_013862
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598487
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Allochromatium vinosum DSM 180(T)
author: Weissgerber, T.
author: Zigann, R.
author: Bruce, D.
author: Chang, Y.J.
author: Detter, J.C.
author: Han, C.
author: Hauser, L.
author: Jeffries, C.D.
author: Land, M.
author: Munk, A.C.
author: Tapia, R.
author: Dahl, C.
journal: Stand Genomic Sci
volume: 5
issue: 3
pages: 311-330
year: 2011
pubmed: 22675582

22675582
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Cheng, J.-F.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Munk, A.C.
author: Detter, J.C.
author: Han, C.
author: Tapia, R.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Ivanova, N.
author: Zigann, R.
author: Dahl, C.
author: Woyke, T.
journal: Submitted (01-FEB-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39929:1
position: 39929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-39929:1:source
so part of: sequence
organism: Allochromatium vinosum DSM 180
mol type: genomic DNA
strain: DSM 180
culture collection: DSM:180, ATCC 17899
type material: type strain of Allochromatium vinosum
plasmid: pALVIN02

572477
type: Taxonomy
SIO_000068: taxonomy

ALVIN_RS17355
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17355
old locus tag: Alvin_3254
so part of: sequence
location: 79..714
location: region:79-714:1
so has part: feature:79-714:1:exon
subclass of: SO_0000010

position:79:1
position: 79
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:714:1
position: 714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79-714:1:exon

ALVIN_RS17355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17355
old locus tag: Alvin_3254
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020504303.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MPNVIAVLNPKGGSGKTTLAIHLAYALKEHGRTLLVDADIQGSARDWSAAGSSGLPVIGLDRPTLDRELQAIGGDYQWIVIDGASKVEKMVASGVKAADMILIPVQPSALDLWACAPLVDVIQARQQATDGRPAAAFVVVRAKKNTSIAREMRRAVEGYGLPLLPHTIYDRTLYARAITEGTTVQAMDAASEAANEIRLLTNRVLEAFDGV
SIO_010081: ALVIN_RS17355
subclass of: SO_0000673
so part of: ALVIN_RS17355
location: 79..714
location: region:79-714:1
so has part: feature:79-714:1:exon

WP_012979570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79-714:1:exon

ALVIN_RS16170
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16170
old locus tag: Alvin_3256
so part of: sequence
location: 941..1165
location: region:941-1165:1
so has part: feature:941-1165:1:exon
subclass of: SO_0000010

position:941:1
position: 941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1165:1
position: 1165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:941-1165:1:exon

ALVIN_RS16170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16170
old locus tag: Alvin_3256
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012972345.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MCLRWIHPEKQRYYQVELLQDLLGDWTLFQCWGGIGSHLGGQRIVWVESQEAGLTRIRQIRARRRQHGYQEHIS
SIO_010081: ALVIN_RS16170
subclass of: SO_0000673
so part of: ALVIN_RS16170
location: 941..1165
location: region:941-1165:1
so has part: feature:941-1165:1:exon

WP_012979572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:941-1165:1:exon

ALVIN_RS16175
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16175
old locus tag: Alvin_3257
so part of: sequence
location: 1315..1530
location: region:1315-1530:1
so has part: feature:1315-1530:1:exon
subclass of: SO_0000010

position:1315:1
position: 1315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1530:1
position: 1530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1315-1530:1:exon

ALVIN_RS16175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16175
old locus tag: Alvin_3257
inference: COORDINATES: protein motif:HMM:NF021558.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2281 domain-containing protein
translation: MGYAELIQTLEQLPEEKQIEVLDFAKFLAQRNQNNTIAPKTLAETALAKWINNPLGVKDFQPLSREEANAR
SIO_010081: ALVIN_RS16175
subclass of: SO_0000673
so part of: ALVIN_RS16175
location: 1315..1530
location: region:1315-1530:1
so has part: feature:1315-1530:1:exon

WP_012979573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1315-1530:1:exon

ALVIN_RS17365
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17365
old locus tag: Alvin_3258
so part of: sequence
location: 1520..1936
location: region:1520-1936:1
so has part: feature:1520-1936:1:exon
subclass of: SO_0000010

position:1520:1
position: 1520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1936:1
position: 1936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1520-1936:1:exon

ALVIN_RS17365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17365
old locus tag: Alvin_3258
inference: COORDINATES: protein motif:HMM:NF013970.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PIN domain-containing protein
translation: MPAKVFVDTNIWLYALVSHEDDPKHVQAASFVLALQRPLINSQVIREASSNLLKKAGIAEAKLRTIIEDWYRDCDIYPSSAVQHTLASKLRETYSFSYWDSLIVAAALDAGCSTLFSEDMQHGQNIENRLTIINPFLL
SIO_010081: ALVIN_RS17365
subclass of: SO_0000673
so part of: ALVIN_RS17365
location: 1520..1936
location: region:1520-1936:1
so has part: feature:1520-1936:1:exon

WP_012979574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1520-1936:1:exon

ALVIN_RS16180
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16180
old locus tag: Alvin_3259
so part of: sequence
location: 2050..3792
location: region:2050-3792:1
so has part: feature:2050-3792:1:exon
subclass of: SO_0000010

position:2050:1
position: 2050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3792:1
position: 3792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2050-3792:1:exon

ALVIN_RS16180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16180
old locus tag: Alvin_3259
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017977244.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
translation: MNQTNLSALIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLESTKDAVLAEEKAKRQMGVNPELFLLRVSGQSFYNVSPLDMKKLLGDPDHIKANLLSYLHGFSDDVRDIFEQFDVQTQIDRLAKTNLLYQVTERFAQVDLHPNRVSNSQMGLVFEELIRKFAELSNETAGEHFTPREVIRLMVNLLFIEDDAVLAKPGVVRTLYDPTAGTGGMLSVAGEYLEEHNPEARLTMFGQELNPESYAICKADMLIKGQDVANIVFGNTFSEDGHPQRTFDYMLSNPPFGVEWKKVEKAIRQEHETLGFSGRFGPGLPRVSDGSLLFLLHLISKMRPAIDGGSRLGIVLNGSPLFTGGAGSGESEIRRYVLENDLVEAIIGLPTDMFYNTGISTYVWILSNRKPEHRRGLVQLIDASGLWQKMRKSLGSKRKELSDAHIAEITRLFGECREAYDGKKPISRLFKNSDFGYRTITVERPLRDEAGNIVLGLKGKQKGKPQPDTSRRDTENVPLAEDVETYFQREVLPHAQDAWIDHDKTKVGYEIPFNRHFYVFEPPRPLADIDADLKRCTDRILTMIEGLSA
SIO_010081: ALVIN_RS16180
subclass of: SO_0000673
so part of: ALVIN_RS16180
location: 2050..3792
location: region:2050-3792:1
so has part: feature:2050-3792:1:exon

WP_012979575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2050-3792:1:exon

ALVIN_RS16185
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16185
old locus tag: Alvin_3260
so part of: sequence
location: 3808..4032
location: region:3808-4032:1
so has part: feature:3808-4032:1:exon
subclass of: SO_0000010

position:3808:1
position: 3808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4032:1
position: 4032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3808-4032:1:exon

ALVIN_RS16185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16185
old locus tag: Alvin_3260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011745144.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQAIEFEAVSENHRIQLPDTAPNGVRMRVLLLWEPSSPSETDLKDLFSSVTEGLTAADLERPRDFGRRDVEWDI
SIO_010081: ALVIN_RS16185
subclass of: SO_0000673
so part of: ALVIN_RS16185
location: 3808..4032
location: region:3808-4032:1
so has part: feature:3808-4032:1:exon

WP_012979576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3808-4032:1:exon

ALVIN_RS16190
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16190
old locus tag: Alvin_3261
so part of: sequence
location: 4020..4445
location: region:4020-4445:1
so has part: feature:4020-4445:1:exon
subclass of: SO_0000010

position:4020:1
position: 4020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4445:1
position: 4445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4020-4445:1:exon

ALVIN_RS16190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16190
old locus tag: Alvin_3261
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012879669.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MGYLIDTNVWSELQKRSRIDPGVQRWFAEVAMDEVYLSVLVVGEVRCGIERLRRRDPQQASRLETRLEQLTSAMSGRILPLSLPIAEQWGRINVPNPLPVVDGLLAATALVHDLTLVTRNVRDVERSGVKLLNPFAEAVSE
SIO_010081: ALVIN_RS16190
subclass of: SO_0000673
so part of: ALVIN_RS16190
location: 4020..4445
location: region:4020-4445:1
so has part: feature:4020-4445:1:exon

WP_012979577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4020-4445:1:exon

ALVIN_RS16195
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16195
old locus tag: Alvin_3262
so part of: sequence
location: 4442..5803
location: region:4442-5803:1
so has part: feature:4442-5803:1:exon
subclass of: SO_0000010

position:4442:1
position: 4442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5803:1
position: 5803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4442-5803:1:exon

ALVIN_RS16195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16195
old locus tag: Alvin_3262
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019396227.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MSFPRYERYKDSGVEWLGEVPEHWILDRLKWSVEGCINGLWGDDPNGEDVIPCIRVADFDRAKNRVRAEDLTYRSISEEKRLNRSLKNGDLLIEKSGGGDNQPVGVVVLFDHNLNAVCSNFVARMPVRSNFSPRFLCYLHSVLYALRLNTKSIKQNTGIQNLDSASYLDERFGIPTVYEQGLIADFLDRETAKIDALIAEQQRLVELLKEKRQAVISHAVTKGLNPDAPMKDSGIEWLGEVPEHWVIVPLKHLTAPGRDIMYGIVLPGPNVDNGVPIVKGGDVRPHRLRLELLNRTTEAIEAPYARARLRPSDIVYSIRGSIGDAELVPDELLDANITQDVARISPDQTVNSLWLLFVMKSVRVFVQLEQRSLGAAVRGINIFDLKRARIPFPDIQEQKTIATFLDRETTKLDALTAEAQTAITLLQERRTALISAAVTGKIDVRGFASDSTH
SIO_010081: ALVIN_RS16195
subclass of: SO_0000673
so part of: ALVIN_RS16195
location: 4442..5803
location: region:4442-5803:1
so has part: feature:4442-5803:1:exon

WP_012979578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4442-5803:1:exon

ALVIN_RS16200
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16200
old locus tag: Alvin_3263
so part of: sequence
location: 5814..6041
location: region:5814-6041:1
so has part: feature:5814-6041:1:exon
subclass of: SO_0000010

position:5814:1
position: 5814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6041:1
position: 6041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5814-6041:1:exon

ALVIN_RS16200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16200
old locus tag: Alvin_3263
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFAIRQMIDDPQDFIPVPAELRHRPTEVIFIALDHVPEAAKTMQAKQTPAGYEDGDGLEPSPLQSIDHPTETKNQ
SIO_010081: ALVIN_RS16200
subclass of: SO_0000673
so part of: ALVIN_RS16200
location: 5814..6041
location: region:5814-6041:1
so has part: feature:5814-6041:1:exon

WP_012979579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5814-6041:1:exon

ALVIN_RS16205
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16205
old locus tag: Alvin_3264
so part of: sequence
location: 6038..6268
location: region:6038-6268:1
so has part: feature:6038-6268:1:exon
subclass of: SO_0000010

position:6038:1
position: 6038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6268:1
position: 6268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6038-6268:1:exon

ALVIN_RS16205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16205
old locus tag: Alvin_3264
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005240543.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor
translation: MITAKIDRRGTLQSVRLPEGFQFDVDEVEILRRGDEIVLRQKPTSLRAAFDLLASMPDDFFAEGRQDVPPETRESL
SIO_010081: ALVIN_RS16205
subclass of: SO_0000673
so part of: ALVIN_RS16205
location: 6038..6268
location: region:6038-6268:1
so has part: feature:6038-6268:1:exon

WP_012979580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6038-6268:1:exon

ALVIN_RS16210
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16210
old locus tag: Alvin_3265
so part of: sequence
location: 6274..6675
location: region:6274-6675:1
so has part: feature:6274-6675:1:exon
subclass of: SO_0000010

position:6274:1
position: 6274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6675:1
position: 6675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6274-6675:1:exon

ALVIN_RS16210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16210
old locus tag: Alvin_3265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005004485.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MRYLLDTNICIYIAKRRPPEVAGRFDSLHPGEVGMSIITYGELLLGAEKSQHPQPTKERLRRFVELVPVLSLPRESPHRYARIRADLERAGTPIGANDLWIAAHALTSGLILVSNNLREFGRIPGLATENWAQ
SIO_010081: ALVIN_RS16210
subclass of: SO_0000673
so part of: ALVIN_RS16210
location: 6274..6675
location: region:6274-6675:1
so has part: feature:6274-6675:1:exon

WP_043796539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6274-6675:1:exon

ALVIN_RS16215
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16215
old locus tag: Alvin_3266
so part of: sequence
location: 6672..9803
location: region:6672-9803:1
so has part: feature:6672-9803:1:exon
subclass of: SO_0000010

position:6672:1
position: 6672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9803:1
position: 9803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6672-9803:1:exon

ALVIN_RS16215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16215
old locus tag: Alvin_3266
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011791641.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction endonuclease
translation: MNLHREVNFETEICDALAAQGWFYADGDAADYDRARALFPADVLAWVQSTQPNAWATLEKNHGPQAAEVLLGRLRDSINQRGTLDVLRHGIELLGLRHPLTLAQFKPALAMNPDLLTRYAANRLRVIRQLRYSLHNENALDLGLFLNGIPVATAELKTDFTQSVEDAVDQYRFDRHPRPKGQGSAEPLLSFPNGALVHFAVSNREVRMTTHLEGPATRFLPFNRGDHGAAGNPPNEHGGHRTAYLWEDIWARDTWLEILGRYLVAQKDSKKQIKTLIFPRFHQLDGTRKLLVTVLIEGPGGKYLIQHSAGSGKTNSIAWAAHFLADLHDEHHHKLFDSVLVVSDRTVLDSQLQDAIFDFERTAGVVATIKGDGGSKSRELAEALSGGKKIVVCTIQTFPFALKAVRELAATQGKRFAVIADEAHSSQTGEAAAKLKAVLSADEWQALTDGGEISTEDLLAAQMTTRAAETGITYVAFTATPKAKTLQLFGRRPDPNRPAGPDNLPAPFHVYSMRQAIEEGFILDVLKNYTPYKLAFRLATMGREWDEQEMVRDEALKGILRWVRLHPYNISQKVQVVVEHFRENVAPLLNGRAKAMVVVGSRLEAVRWRLAIDHYTQEQGYPIGTLVAFSGDVIDPESGPDPFSETSQTMNPNLKGRGIRDAFDTDDYQILLVANKFQTGFDQPLLCGMYVDKRLAGIAAVQTLSRLNRAYPNKDTTYVVDFVNDPEDILDAFKAYYETAELSGVTDPNLIFNLRSKLDAAGFYDDFEVNRVVEVEFNPKAKHSDLTAALEPVASRLLQQYKAAQNRLKSAKAKDDAAAIKEAQDALNALRLFKKDLGTFQRVYAFLSQIFDYGNTAIEKRFIFYRRLLPLLEFGRERDTIDLSKIVLTHHTLKRQGQRSLVLQAGETSTLTPLGESGTGTVQDKEKARLREIIAKVNDLFEGDLTDDDQLVYVNHVLKGKLLESKTLIQQASNNTKEQFANSPDLSNELLNAIIDAFAAHTTMSKQALDSEKVRRGLQDILLGPAQLYEALREQTESAQAVP
SIO_010081: ALVIN_RS16215
subclass of: SO_0000673
so part of: ALVIN_RS16215
location: 6672..9803
location: region:6672-9803:1
so has part: feature:6672-9803:1:exon

WP_012979582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6672-9803:1:exon

ALVIN_RS17370
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17370
so part of: sequence
location: 10096..10518
location: region:10096-10518:1
so has part: feature:10096-10518:1:exon
subclass of: SO_0000010

position:10096:1
position: 10096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10518:1
position: 10518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10096-10518:1:exon

ALVIN_RS17370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17370
inference: COORDINATES: protein motif:HMM:NF013014.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: H-NS family nucleoid-associated regulatory protein
translation: MIHSETDPTEHLLQRKRELEEKEKEIEKQKKEIEEKIKESNLGSRQKALNDILDLMNTYEIDISDIAIAKKYPEKIKKTSQATKEKKPKFPQPPEGKKYFNLETNKSWSGRGPIDDSIRNHPDPNSLLVDKVVEQPTTAI
SIO_010081: ALVIN_RS17370
subclass of: SO_0000673
so part of: ALVIN_RS17370
location: 10096..10518
location: region:10096-10518:1
so has part: feature:10096-10518:1:exon

WP_081442771.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10096-10518:1:exon

ALVIN_RS16220
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16220
old locus tag: Alvin_3267
so part of: sequence
location: complement(10615..10902)
location: region:10615-10902:-1
so has part: feature:10615-10902:-1:exon
subclass of: SO_0000010

position:10615:-1
position: 10615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10902:-1
position: 10902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10615-10902:-1:exon

ALVIN_RS16220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16220
old locus tag: Alvin_3267
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019466989.1
GO component: GO:0005694 - chromosome [Evidence IEA]
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: integration host factor subunit beta
translation: MTRSELITQMANRQEHLPEADVEVVVKALLNLLRESLANGERIEVRGFGSFSLHYRPPRQARNPKTGETVFTAGKHYLHFKPGKELRERVNFVYF
SIO_010081: ALVIN_RS16220
subclass of: SO_0000673
so part of: ALVIN_RS16220
location: complement(10615..10902)
location: region:10615-10902:-1
so has part: feature:10615-10902:-1:exon

WP_012979583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10615-10902:-1:exon

ALVIN_RS16225
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16225
old locus tag: Alvin_3268
so part of: sequence
location: complement(11099..11632)
location: region:11099-11632:-1
so has part: feature:11099-11632:-1:exon
subclass of: SO_0000010

position:11099:-1
position: 11099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11632:-1
position: 11632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11099-11632:-1:exon

ALVIN_RS16225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16225
old locus tag: Alvin_3268
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRHAPQTEQIQQRVWSFFKDNFSRYIDYQKIDRRSEIKRYILWEIGSYAHDFGYKTYAAKEIGSCVRGEPWIYDLHWGADSESCPLIRLPLVMEVVCDEWNPSQDQRIIDAFLKLMQSKADIRLMVFERTDVQEMQEYLCTLIEQFEGTQPGDRYWIIGWDTLPLSPTGLKCLDYRA
SIO_010081: ALVIN_RS16225
subclass of: SO_0000673
so part of: ALVIN_RS16225
location: complement(11099..11632)
location: region:11099-11632:-1
so has part: feature:11099-11632:-1:exon

WP_012979584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11099-11632:-1:exon

ALVIN_RS17375
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17375
old locus tag: Alvin_3269
so part of: sequence
location: complement(11689..12219)
location: region:11689-12219:-1
so has part: feature:11689-12219:-1:exon
subclass of: SO_0000010

position:11689:-1
position: 11689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12219:-1
position: 12219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11689-12219:-1:exon

ALVIN_RS17375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17375
old locus tag: Alvin_3269
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNNPITNAIEGQLIHTFGEYLNDFFHTTHFTHWRKGVLNTLCKYGHQLGCQVFTSKALCPQAEGEEWIYDLHWRAANESSRLVRLPLVMQMEDFQDQNPFFHAIITQSVLKLAHARADTRLLVLGCRDTQRTLDHIYNTLEQFEHYQAGDRYVFALWDFNINPHANKMQVFLHHR
SIO_010081: ALVIN_RS17375
subclass of: SO_0000673
so part of: ALVIN_RS17375
location: complement(11689..12219)
location: region:11689-12219:-1
so has part: feature:11689-12219:-1:exon

WP_012979585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11689-12219:-1:exon

ALVIN_RS16235
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16235
old locus tag: Alvin_3270
so part of: sequence
location: complement(12296..13456)
location: region:12296-13456:-1
so has part: feature:12296-13456:-1:exon
subclass of: SO_0000010

position:12296:-1
position: 12296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13456:-1
position: 13456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12296-13456:-1:exon

ALVIN_RS16235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16235
old locus tag: Alvin_3270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAATRTPKDQAFRERLQKLDQLASQIAKSTGNLFELAQTQTQGQFKPRATYIRVRGLGHDLYQQLRNHVHIQECLYDTDHKTYKYADVLRISPIVIAFLETLKQDSGIANLCFQRSKITFTSGQYPYNLSAVLHSPEPDAKAVQASQTRRGTPDTGYSSLSGLTPDQQQERACQSLNALVDTLRSTFKDPQFQSRLKNFRRRAKENYQGLIDFATKLCDHYQHIAVVYVRFEYEVSDHSKNRDIYADRQALVSLKSPIRKTSIGYALKIEYMDPKPILHGMLFYRASDTHRLVHDLFEIYNYWYEQATSHSGQRPNPTTFNRRYIEARHQRPLPEEIQSIATMITKFDNYAQSKGKGRTFTKSTLPRTVKPSTPVLSSSTSMFQSG
SIO_010081: ALVIN_RS16235
subclass of: SO_0000673
so part of: ALVIN_RS16235
location: complement(12296..13456)
location: region:12296-13456:-1
so has part: feature:12296-13456:-1:exon

WP_148217653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12296-13456:-1:exon

ALVIN_RS16240
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16240
old locus tag: Alvin_3271
so part of: sequence
location: complement(13909..15072)
location: region:13909-15072:-1
so has part: feature:13909-15072:-1:exon
subclass of: SO_0000010

position:13909:-1
position: 13909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15072:-1
position: 15072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13909-15072:-1:exon

ALVIN_RS16240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16240
old locus tag: Alvin_3271
inference: COORDINATES: protein motif:HMM:NF023154.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: inovirus-type Gp2 protein
translation: MFQIDDALFDAYPILRDSLLQRQYNKLEEPLRYISRDQDGLDALIRVVELGLALDQHQHGDPLFTLQRTLQGQTYLDVKKHPLGLKLYQAIRFDAPLIRRHFPQHEFDPWVSCFLRQVEQPPDLQEIIQLYREDAITIDHQRVYDVLQTCVEALRSLFHSEPFFLDIQQRYREMQHRHQRLHSYVKSRLERTEKLMVCRIELTYRDPVRCSRKRRPYITLDQTLDHQQAFAQSFATSGLFEHLVGSIWKLSYAAYKGFYYQWFFFFDGSAVLSGWEMSERIGRHWREQVGHEARFWNQHIDSGKYLPLGTGMIQRDQWSRWCNLDLALRNLCVVDYFMQLQHPQRRTFGRGYLRRSPEVGLEYSDAYSVEQSNMEQHWNRWRAKNIT
SIO_010081: ALVIN_RS16240
subclass of: SO_0000673
so part of: ALVIN_RS16240
location: complement(13909..15072)
location: region:13909-15072:-1
so has part: feature:13909-15072:-1:exon

WP_012979587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13909-15072:-1:exon

ALVIN_RS16790
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16790
old locus tag: Alvin_3272
so part of: sequence
location: complement(15194..16318)
location: region:15194-16318:-1
so has part: feature:15194-16318:-1:exon
subclass of: SO_0000010

position:15194:-1
position: 15194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16318:-1
position: 16318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15194-16318:-1:exon

ALVIN_RS16790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16790
old locus tag: Alvin_3272
inference: COORDINATES: protein motif:HMM:NF023154.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: inovirus Gp2 family protein
translation: MMIDNAKMPPEIFYALDESLLVNDPGNAQRIRTEDKDALDKVKCLNTLMIALSRNRDVLFQVRQRRGQPRLFMRRGSLGEILFRAIRVDALKICEHFPFHVFDPLVECFLQHLNADESLVSRVQMYHEHPDSVDVFRLVEDLNEFANGLRLFMAGSEMAKRIKIRRQASRDLYQGSLNYINYLFERYARLLVVRVDLSFLTPSQCHDRDWTPVTFEDALAYRERFTRSWKREPLFEHLVGYVWKIEHGALKGFHTHWLFFFDGSKVREDMTLGHLIGEHWKVIVGSHATYWNCNVYKTQYRHLGIGQIDHADQTKRQALQRVVQYLCKVDDFISLKHTGRRRAFGRGWIKPVTTVKRGRPRQTASTDHTTDRSG
SIO_010081: ALVIN_RS16790
subclass of: SO_0000673
so part of: ALVIN_RS16790
location: complement(15194..16318)
location: region:15194-16318:-1
so has part: feature:15194-16318:-1:exon

WP_012979588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15194-16318:-1:exon

ALVIN_RS16255
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16255
old locus tag: Alvin_3273
so part of: sequence
location: 17350..17718
location: region:17350-17718:1
so has part: feature:17350-17718:1:exon
subclass of: SO_0000010

position:17350:1
position: 17350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17718:1
position: 17718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17350-17718:1:exon

ALVIN_RS16255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16255
old locus tag: Alvin_3273
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017337807.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVLSCPHCQSMKIVKRDVAKRMGGLLGTVGGAASGAAKAMEGAQVGSRVGLVAFGPMGATLGGFAGALLGGLLGATTGGVAGAKLGEVIDAQVLHNCECLHCGHRFSDPNADEAFDPGVFRA
SIO_010081: ALVIN_RS16255
subclass of: SO_0000673
so part of: ALVIN_RS16255
location: 17350..17718
location: region:17350-17718:1
so has part: feature:17350-17718:1:exon

WP_012979589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17350-17718:1:exon

ALVIN_RS16260
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16260
old locus tag: Alvin_3274
so part of: sequence
location: 17761..18018
location: region:17761-18018:1
so has part: feature:17761-18018:1:exon
subclass of: SO_0000010

position:17761:1
position: 17761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18018:1
position: 18018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17761-18018:1:exon

ALVIN_RS16260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16260
old locus tag: Alvin_3274
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLSISVHAVAKIQVSADGRPFEHQGRMHWWQSLLLFDCHDALIGEITLHLHRPEVALPVGDQPPYWGLDPQRQPLVIEADEAPF
SIO_010081: ALVIN_RS16260
subclass of: SO_0000673
so part of: ALVIN_RS16260
location: 17761..18018
location: region:17761-18018:1
so has part: feature:17761-18018:1:exon

WP_012979590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17761-18018:1:exon

ALVIN_RS16265
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16265
old locus tag: Alvin_3275
so part of: sequence
location: 18071..18970
location: region:18071-18970:1
so has part: feature:18071-18970:1:exon
subclass of: SO_0000010

position:18071:1
position: 18071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18970:1
position: 18970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18071-18970:1:exon

ALVIN_RS16265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16265
old locus tag: Alvin_3275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014777958.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006259 - DNA metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase RecT
translation: MAQSMQPSSPDLRLQVPETTLSALGLDTTTWQVLTESIFPNANTAQGILLAVRYCQARGLDVLKRPVNIVPMWSKRLGREVETIWPGINEVQITAARTGQYAGLDPAQFGPDQNRTFQGRVKTNGNWQDAQVEVTFPEWCEVTVYRLLHGMRCPFSERVYWLETYSRSGGAYSEVPTAMWIKRPRGQLLKCAKAASLRAAFPEEADYTAEEMAGKSLEPEEILVDTPSVSTDNTPVDPPETPDWMAQIDALIERAANSQAWNAAQDYFHQRFSGEALSYALQGLERAQEQALSPTAEAA
SIO_010081: ALVIN_RS16265
subclass of: SO_0000673
so part of: ALVIN_RS16265
location: 18071..18970
location: region:18071-18970:1
so has part: feature:18071-18970:1:exon

WP_012979591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18071-18970:1:exon

ALVIN_RS16270
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16270
old locus tag: Alvin_3276
so part of: sequence
location: 19075..20079
location: region:19075-20079:1
so has part: feature:19075-20079:1:exon
subclass of: SO_0000010

position:19075:1
position: 19075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20079:1
position: 20079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19075-20079:1:exon

ALVIN_RS16270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16270
old locus tag: Alvin_3276
inference: COORDINATES: protein motif:HMM:TIGR03033.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YqaJ viral recombinase family protein
translation: MHTIDHRQRTPEWHAWRALGITASESPIILGRSPYKTPWQLWAERTGLHPPEDLRTNPVVQRGIALEDTVRQGFERRHRTLLMPLCAESSQYPVLRCSLDGLSALGEPVELKVPTVATYEAIRDQGDQATAYRLAWCQLQFQLYVTEATQGWLVFDPCRDGLEALEFCLPRDQSFIQDELVPACLTFWDLIQTGQAPVTDPTRDAYQPSETERETWTRLAQDYHALKAERQRLEPPLKAVQERLRDLEAQFVTLMGTSRQADYAGVRVTRYLQSGAVDYGALLADIAPTLEASRLERFRQPASERVKVTLHAPATGVDAEPVRASVSTIPSFYF
SIO_010081: ALVIN_RS16270
subclass of: SO_0000673
so part of: ALVIN_RS16270
location: 19075..20079
location: region:19075-20079:1
so has part: feature:19075-20079:1:exon

WP_012979592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19075-20079:1:exon

ALVIN_RS16275
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16275
old locus tag: Alvin_3277
so part of: sequence
location: 20176..21126
location: region:20176-21126:1
so has part: feature:20176-21126:1:exon
subclass of: SO_0000010

position:20176:1
position: 20176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21126:1
position: 21126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20176-21126:1:exon

ALVIN_RS16275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16275
old locus tag: Alvin_3277
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014777132.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MSTQSFTVATTFGVNARPELEVQGFADATHPQIPIRQPYVFRPELLRDVLAYLHEARGDGLFLTGPSGAGKTSLVTQIAARLNWPVQAVTCHGRLELSALIGQFVLVNGSTQFVHGPLSVAVREGHILILNEIDLMDPAELAGLNDIIEGQPLVIAENGGEVIRPHPRFRLFVTGNSAGAGDRSGLYQGVQRQNLAFMDRFRVIEVRYPEPEVEKAVIQAAAPKLPELIIDKMLLVAAEVRRLFQGSQEGEPELTVTLSTRTLVRWASLSLTFKGAPNVFAYALSQALTARAEPEQREAIHRLCADIFGDYWTTTP
SIO_010081: ALVIN_RS16275
subclass of: SO_0000673
so part of: ALVIN_RS16275
location: 20176..21126
location: region:20176-21126:1
so has part: feature:20176-21126:1:exon

WP_012979593.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20176-21126:1:exon

ALVIN_RS16280
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16280
old locus tag: Alvin_3278
so part of: sequence
location: 21123..21446
location: region:21123-21446:1
so has part: feature:21123-21446:1:exon
subclass of: SO_0000010

position:21123:1
position: 21123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21446:1
position: 21446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21123-21446:1:exon

ALVIN_RS16280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16280
old locus tag: Alvin_3278
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007195073.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNRFELYRFRHPDGRSKEWAYRDLGNGETEIRWGPARHLGQFQCKPLRVTLDRARAKLRQGYTYVGAVWLDAQGRPTSSAPSSTPDRRRPALKLSDLLGPTDDSFYF
SIO_010081: ALVIN_RS16280
subclass of: SO_0000673
so part of: ALVIN_RS16280
location: 21123..21446
location: region:21123-21446:1
so has part: feature:21123-21446:1:exon

WP_012979594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21123-21446:1:exon

ALVIN_RS16285
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16285
old locus tag: Alvin_3279
so part of: sequence
location: 21528..22502
location: region:21528-22502:1
so has part: feature:21528-22502:1:exon
subclass of: SO_0000010

position:21528:1
position: 21528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22502:1
position: 22502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21528-22502:1:exon

ALVIN_RS16285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16285
old locus tag: Alvin_3279
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007195364.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3150 domain-containing protein
translation: MHVNPTLTTLTDQVTLIILSISIWSGRKKLRAEDLKLGTEIPPEDLVSLGSKRICDPDTLKGFHRLKQAAERTCLRVGTRFLGGYAVPKVHAESVAEQLAHLKTEFDQETQTFLSGYDQALNAWIASLPAWEAPIRRAIEPANLVAGRLRFGYQLVQITPAEQSGTLEDEIQGLGDGVFAEVAQMARDLDGSFEGRDRLHRRALGTFGRIRDKLACLSFIDTRIQPVVDTLDDWLGRLPDTAPITGALFNEGMGLALLLADPERLARHGAGQWTLQQHLAATFAASTPMFVPPSRGLPERADQAHTVDCPLVTADESEIRSFFF
SIO_010081: ALVIN_RS16285
subclass of: SO_0000673
so part of: ALVIN_RS16285
location: 21528..22502
location: region:21528-22502:1
so has part: feature:21528-22502:1:exon

WP_012979595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21528-22502:1:exon

ALVIN_RS16290
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16290
old locus tag: Alvin_3280
so part of: sequence
location: 22591..24399
location: region:22591-24399:1
so has part: feature:22591-24399:1:exon
subclass of: SO_0000010

position:22591:1
position: 22591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24399:1
position: 24399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22591-24399:1:exon

ALVIN_RS16290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16290
old locus tag: Alvin_3280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007195365.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VWA domain-containing protein
translation: MSLHTLTRALPIVAAAYGRRFGIPVQVGGDQAHTDGRMIQIPTLADTAQAHTLAFGYLAHEAGHVRLTDFNHPRHPTALGRCIENILEDVRIEQAMIRDYPGTRQTLDTVVETLIAQGRLSPVTPNNTPSEILVNGLLALSRARYRRQSALTRHAQTADQVMRQVFGSRFVPRLHGLLTEIPTLTSTAETIALAQRIIALIEQESQEPEDSGTSTAADTGEGEPPESRPGCGTDRDDPSSRAEAEADSPTSQDTESDPQDATGTGAEDQDRIEATEHTTNPRRQSTSNTDTDPASVDTTAGRQTTPSSTDLVSSAMQDALQSTLEAGEHQLPEDLFQTVAETLGAQSVYAPTLLPTMERFRGEPHPGQSALQRAKIHSAKLTARLHALVEAQTLEQTQITPRGRALSSTHLHRAGVGNPRIFRLRDHKTAPNTALHLLIDLSGSMAGGQDVLALDAALALALALEPIKGVSCAVSAFPGIEGQEDRITGLLGHGERVATRAGAFVQRGRGGTPMTGALWFAAADLLGRPEARKVILTLTDGVPNDIDSTRDLIRQATAAGLQMLGVGIEVDVSRVFPHAIRINDIADLKRELFHITEHLLLA
SIO_010081: ALVIN_RS16290
subclass of: SO_0000673
so part of: ALVIN_RS16290
location: 22591..24399
location: region:22591-24399:1
so has part: feature:22591-24399:1:exon

WP_012979596.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22591-24399:1:exon

ALVIN_RS16295
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
gene: radC
locus tag: ALVIN_RS16295
old locus tag: Alvin_3281
so part of: sequence
location: 24475..24978
location: region:24475-24978:1
so has part: feature:24475-24978:1:exon
subclass of: SO_0000010

position:24475:1
position: 24475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24978:1
position: 24978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24475-24978:1:exon

ALVIN_RS16295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
gene: radC
locus tag: ALVIN_RS16295
old locus tag: Alvin_3281
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007195089.1
GO process: GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA repair protein RadC
translation: MSHPNPWRVLESDAQRRPTLSFTERTLVAEAIDCLERHYRVAQEALTSPDATRDYLKLRLYGLTYEVFAVLLLDNRHRVLRYQELFRGTIDTAYVHPREVVRLVIESGAAAVIFAHNHPSGSSDPSQADRTLTRKLQDALALIEVRVLDHIIVGEGRGMSFAEQGWL
SIO_010081: ALVIN_RS16295
subclass of: SO_0000673
so part of: ALVIN_RS16295
location: 24475..24978
location: region:24475-24978:1
so has part: feature:24475-24978:1:exon

WP_012979597.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24475-24978:1:exon

ALVIN_RS17730
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17730
so part of: sequence
location: 25233..25568
location: region:25233-25568:1
so has part: feature:25233-25568:1:exon
subclass of: SO_0000010

position:25233:1
position: 25233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25568:1
position: 25568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25233-25568:1:exon

ALVIN_RS17730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKITVHCNSGSDSECFGTVDVHLPYAGSYAANPNWVFDNDQERKVVESVSIMPDRSQRKQWLEANRHHLTEEQKELIITQGFFDLDYDDIDDKEVCGACGTDQEHGDDDD
SIO_010081: ALVIN_RS17730
subclass of: SO_0000673
so part of: ALVIN_RS17730
location: 25233..25568
location: region:25233-25568:1
so has part: feature:25233-25568:1:exon

WP_148217654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25233-25568:1:exon

ALVIN_RS17380
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17380
old locus tag: Alvin_3282
so part of: sequence
location: complement(25572..25958)
location: region:25572-25958:-1
so has part: feature:25572-25958:-1:exon
subclass of: SO_0000010

position:25572:-1
position: 25572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25958:-1
position: 25958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25572-25958:-1:exon

ALVIN_RS17380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17380
old locus tag: Alvin_3282
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVLAILGSTAWADQRYTIRYALRHGHNSVSHIRTVTAETERTAIEIVKGQAQSERPGYRFVLKSVTVQQASPTSYRIQYEMRQGSRSVSYSKIIRAETERTAIEIARSTAESERPGYTFILKSLTRRD
SIO_010081: ALVIN_RS17380
subclass of: SO_0000673
so part of: ALVIN_RS17380
location: complement(25572..25958)
location: region:25572-25958:-1
so has part: feature:25572-25958:-1:exon

WP_043796534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25572-25958:-1:exon

ALVIN_RS16795
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16795
old locus tag: Alvin_3283
so part of: sequence
location: complement(26046..26651)
location: region:26046-26651:-1
so has part: feature:26046-26651:-1:exon
subclass of: SO_0000010

position:26046:-1
position: 26046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26651:-1
position: 26651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26046-26651:-1:exon

ALVIN_RS16795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16795
old locus tag: Alvin_3283
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: lysozyme inhibitor LprI family protein
translation: MTLKTIARIVLATGLALQMLHTVAQPSFDCSKAATLVENAICQDPELGALDVVLAEQYQAVWRATSGDSARQALKKSQRIWLAKRNQCQDRPCLVRAYRERLEALEVAVADPESTRFSRCRLEVRGQRYIDGPCTGSLDSDGSFQIYTPAYFAMVQVEQPGVALGFWNEDAYASHAHSDLGRLTRDGACWTNAQASVCAWK
SIO_010081: ALVIN_RS16795
subclass of: SO_0000673
so part of: ALVIN_RS16795
location: complement(26046..26651)
location: region:26046-26651:-1
so has part: feature:26046-26651:-1:exon

WP_012979599.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26046-26651:-1:exon

ALVIN_RS16320
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16320
old locus tag: Alvin_3285
so part of: sequence
location: complement(26900..27535)
location: region:26900-27535:-1
so has part: feature:26900-27535:-1:exon
subclass of: SO_0000010

position:26900:-1
position: 26900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27535:-1
position: 27535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26900-27535:-1:exon

ALVIN_RS16320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16320
old locus tag: Alvin_3285
inference: COORDINATES: protein motif:HMM:NF037877.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IrmA family protein
translation: MAAASSAADVETIRFWNTNKLFANQGQCSAVFFFDSGLQSIENLQVSFSALNASGESIATGTLEIATFGNGSADRYADAFAESEHFCDDDLTIVVDQATAIIEGKQVDLLAQKVLVPEDFKPFKIRTTSARNTDKAAADTLTVVPNPASDCDLSYGETLKNAGLVPKEISIHGPEDTDFSGYGCPYRITPAPGTKIQTGSTVTFRSAWEAG
SIO_010081: ALVIN_RS16320
subclass of: SO_0000673
so part of: ALVIN_RS16320
location: complement(26900..27535)
location: region:26900-27535:-1
so has part: feature:26900-27535:-1:exon

WP_043796536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26900-27535:-1:exon

ALVIN_RS18120
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS18120
old locus tag: Alvin_3286
so part of: sequence
location: complement(27711..27983)
location: region:27711-27983:-1
so has part: feature:27711-27983:-1:exon
subclass of: SO_0000010

position:27711:-1
position: 27711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27983:-1
position: 27983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27711-27983:-1:exon

ALVIN_RS18120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS18120
old locus tag: Alvin_3286
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001172372.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YkgJ family cysteine cluster protein
translation: MQHFPCNRCGLCCQNVNLAEETRFLDRGDGICSHYNEISKFCTIYANRPDICRVDLQYRLHYAHLYSWNEFVDLNLQACRQLAELKKMEL
SIO_010081: ALVIN_RS18120
subclass of: SO_0000673
so part of: ALVIN_RS18120
location: complement(27711..27983)
location: region:27711-27983:-1
so has part: feature:27711-27983:-1:exon

WP_012979602.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27711-27983:-1:exon

ALVIN_RS16325
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16325
old locus tag: Alvin_3287
so part of: sequence
location: complement(27991..29613)
location: region:27991-29613:-1
so has part: feature:27991-29613:-1:exon
subclass of: SO_0000010

position:27991:-1
position: 27991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29613:-1
position: 29613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27991-29613:-1:exon

ALVIN_RS16325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16325
old locus tag: Alvin_3287
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006115896.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTAAAEYPWLEELEKTVVNSFVTTFGLDFILFKDKIGGDVNTIHNVRQGTWATDAEKKSYENRGEYSSETYHTHENYKATGKRDKQLQQEGKLYYSYSDSVMDRNEQRNLDHVISAKEIHDDAGRVLAELDGSNLANQDSNLQTTSETINKSKKQTPIDQYLEKLPNLINTHEKTLDDYQRRLSSMPSDTLEQKQKIRELESKIQKQEEKIKKLKSVDPDAMRERDRVAREAYNQQVNVTYYTSSKFLKQTATASGLAGLKMGTRQMLGLILAEVWFELRVQIPIIFEKIKNNFDIYEFFNSIQETLQGIWQRVKARFQDFLIAFKDGVFAGVFSSVTTTVFNIFATTQKMAIKIIREMWAHIVKAIKLIIFNPERLGFVDLCKSVVSILSVAVATVAGTMIYTQLIPFLSFPFGSELAAFASALITGVITLGLNYFMIYSTLAQKIWAFAESIMPHADSVNKFKAINAELDRYLLELSRLEFNLDTVEFHAFSQELTSCNTEIERSLLLKAEVEKRGIELPYEIGNATSTRKWLASLV
SIO_010081: ALVIN_RS16325
subclass of: SO_0000673
so part of: ALVIN_RS16325
location: complement(27991..29613)
location: region:27991-29613:-1
so has part: feature:27991-29613:-1:exon

WP_012979603.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27991-29613:-1:exon

ALVIN_RS16330
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16330
old locus tag: Alvin_3288
so part of: sequence
location: complement(29681..30781)
location: region:29681-30781:-1
so has part: feature:29681-30781:-1:exon
subclass of: SO_0000010

position:29681:-1
position: 29681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30781:-1
position: 30781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29681-30781:-1:exon

ALVIN_RS16330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16330
old locus tag: Alvin_3288
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011518269.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLPIIIGAAALATAAYGAKKGYDGYQKHSEADEIVKSAKSRYERKKTAFDEQEAETTLFLEMLGKKELEIGQSFGEFKTLADKLLQQLQANRQNKLEIRIPKHELQKIESYSYTAVGVLGTVVGAGAAGAAAGFAVYGGVMALGAASTGTAISSLAGVAATNATLAAIGGGSLATGGLGMAGGTAILSAAVAAPILAIAGWAYNSHGEEALKNARKADTEVSEAVGKLGRAIEQLILTEEYARKIKGVLSSIYGQFNQYFDSLKEIDSFLEDLKGRNVDKEAELAKLNDEIIRIIENGYALAAILVDVITTPIFKVKKVNGEVLKDENDVPVMERDEDDFMIVNETNLDKVLIKARSDAGGIAAI
SIO_010081: ALVIN_RS16330
subclass of: SO_0000673
so part of: ALVIN_RS16330
location: complement(29681..30781)
location: region:29681-30781:-1
so has part: feature:29681-30781:-1:exon

WP_012979604.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29681-30781:-1:exon

ALVIN_RS16335
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16335
old locus tag: Alvin_3289
so part of: sequence
location: complement(31363..31656)
location: region:31363-31656:-1
so has part: feature:31363-31656:-1:exon
subclass of: SO_0000010

position:31363:-1
position: 31363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31656:-1
position: 31656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31363-31656:-1:exon

ALVIN_RS16335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16335
old locus tag: Alvin_3289
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018002176.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPDVIWLPEAIDDLERLRAFLMDTHPKAARQAAQVIVKGASRLSDFPEIGPPMDDGTGRRELFEAFGRGGYVLRYRIDDGRVVILRVWHAREQRETP
SIO_010081: ALVIN_RS16335
subclass of: SO_0000673
so part of: ALVIN_RS16335
location: complement(31363..31656)
location: region:31363-31656:-1
so has part: feature:31363-31656:-1:exon

WP_012979605.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31363-31656:-1:exon

ALVIN_RS16340
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16340
old locus tag: Alvin_3290
so part of: sequence
location: complement(31644..31931)
location: region:31644-31931:-1
so has part: feature:31644-31931:-1:exon
subclass of: SO_0000010

position:31644:-1
position: 31644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31931:-1
position: 31931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31644-31931:-1:exon

ALVIN_RS16340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16340
old locus tag: Alvin_3290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012506989.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKLVNTGVKLEAGLHQRLKVLSAAKARSPHWLMKAAIEEYVQREERYEQEKREDQERWERYQLTGRSVSQTEVSAWLSTWGDEATGEVAPPCPT
SIO_010081: ALVIN_RS16340
subclass of: SO_0000673
so part of: ALVIN_RS16340
location: complement(31644..31931)
location: region:31644-31931:-1
so has part: feature:31644-31931:-1:exon

WP_012979606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31644-31931:-1:exon

ALVIN_RS16350
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16350
old locus tag: Alvin_3292
so part of: sequence
location: complement(32467..32682)
location: region:32467-32682:-1
so has part: feature:32467-32682:-1:exon
subclass of: SO_0000010

position:32467:-1
position: 32467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32682:-1
position: 32682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32467-32682:-1:exon

ALVIN_RS16350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16350
old locus tag: Alvin_3292
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDGELVERIVHGDVERLVIRRDTCTGQFGIVAEWLDGQGEQHLEPFSDTLDDAWSRVRWMGWQRDIVIQG
SIO_010081: ALVIN_RS16350
subclass of: SO_0000673
so part of: ALVIN_RS16350
location: complement(32467..32682)
location: region:32467-32682:-1
so has part: feature:32467-32682:-1:exon

WP_043796537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32467-32682:-1:exon

ALVIN_RS16355
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16355
old locus tag: Alvin_3293
so part of: sequence
location: complement(32642..33361)
location: region:32642-33361:-1
so has part: feature:32642-33361:-1:exon
subclass of: SO_0000010

position:32642:-1
position: 32642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33361:-1
position: 33361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32642-33361:-1:exon

ALVIN_RS16355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16355
old locus tag: Alvin_3293
inference: COORDINATES: protein motif:HMM:NF012464.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTTLAYLRVSTDQQTDSGAGLEAQYDACLKAAGELAGVYRDEGVSGSTGLDKRPALLEAIGVLNPGDVLMVAKRDRLGRDPLVVAMIESAVQRKGARIMSAAGEGTGSDSPSDILMRRIIDAFAEYERLIIGARTRAALRAKRVRGERVGGIPYGYQLGSDGRALIEQPEEQVIKRQVQTWREAGMSYSGIAKQLNAQGAIPRGKRHWHPQTVKNICLSIGAEGENDERRRAGGAYCTR
SIO_010081: ALVIN_RS16355
subclass of: SO_0000673
so part of: ALVIN_RS16355
location: complement(32642..33361)
location: region:32642-33361:-1
so has part: feature:32642-33361:-1:exon

WP_012979608.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32642-33361:-1:exon

ALVIN_RS16360
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16360
old locus tag: Alvin_3294
so part of: sequence
location: 33582..34283
location: region:33582-34283:1
so has part: feature:33582-34283:1:exon
subclass of: SO_0000010

position:33582:1
position: 33582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34283:1
position: 34283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33582-34283:1:exon

ALVIN_RS16360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16360
old locus tag: Alvin_3294
inference: COORDINATES: protein motif:HMM:NF023168.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MRPVEVTDEAIIEAGRALVEQGRNVTGFALRQVIGSGAPNRLKTVWDRHQAQGLPQPEPRPLPDGIVNVLDRLETEYSKQLYKLALEIQALAHQEAEQTLQAGRDQWQHDRQALEQEVEDASQTVETLEQQMQELQEERERLRHELQQQATQIGTLQAQLEHAHQQVQTLTTEMQQEREQRTLAREQVARQEGELVALRKMQAEWAKSNATPSQAVKKRSRASGSASSNDPDR
SIO_010081: ALVIN_RS16360
subclass of: SO_0000673
so part of: ALVIN_RS16360
location: 33582..34283
location: region:33582-34283:1
so has part: feature:33582-34283:1:exon

WP_012979609.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33582-34283:1:exon

ALVIN_RS17395
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17395
old locus tag: Alvin_3295
so part of: sequence
location: 34425..34778
location: region:34425-34778:1
so has part: feature:34425-34778:1:exon
subclass of: SO_0000010

position:34425:1
position: 34425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34778:1
position: 34778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34425-34778:1:exon

ALVIN_RS17395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17395
old locus tag: Alvin_3295
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGIVKNRTSKLKRQTITDFSHAMSSAHALFLARCPQYGHRTMTRDEWLALRTLVRFQYRAGIRSDTPMNHWIWKQSPPFPCDSDPRSDVLRWRLSRLPYRGLTEPDDSFDYDADIPF
SIO_010081: ALVIN_RS17395
subclass of: SO_0000673
so part of: ALVIN_RS17395
location: 34425..34778
location: region:34425-34778:1
so has part: feature:34425-34778:1:exon

WP_012979610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34425-34778:1:exon

ALVIN_RS16365
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16365
old locus tag: Alvin_3296
so part of: sequence
location: 34804..35211
location: region:34804-35211:1
so has part: feature:34804-35211:1:exon
subclass of: SO_0000010

position:34804:1
position: 34804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35211:1
position: 35211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34804-35211:1:exon

ALVIN_RS16365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16365
old locus tag: Alvin_3296
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIIKSYDPDTGNCVGVTLADPTEKSGASISVFNRVETDVKLPLGWYLFSDGRGEYALECRPTDADILAELTYLLAEVQDSEDETLLNVFRRLSGTRSPLLWREFATDRMTAVNESRIERAAQEIVDELNRYGSV
SIO_010081: ALVIN_RS16365
subclass of: SO_0000673
so part of: ALVIN_RS16365
location: 34804..35211
location: region:34804-35211:1
so has part: feature:34804-35211:1:exon

WP_012979611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34804-35211:1:exon

ALVIN_RS17400
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17400
old locus tag: Alvin_3297
so part of: sequence
location: complement(35292..35861)
location: region:35292-35861:-1
so has part: feature:35292-35861:-1:exon
subclass of: SO_0000010

position:35292:-1
position: 35292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35861:-1
position: 35861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35292-35861:-1:exon

ALVIN_RS17400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17400
old locus tag: Alvin_3297
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012969338.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGYLPASGSAVADTLISGLDRTITWNHPEEFFAASSLDLEFEAPIKPDRLIVKRASQAGMDYLVMFENLNIASYLPTDFENDCIDESSEIVESCFVQAGTHDFDADGLPEIILAVGDGFVNLQVNVFSYHPPARPADAIRTENWELIGNFSGQSKVVIKGKSVIIPFGSQGLEQKMVFIDRSFFEIDH
SIO_010081: ALVIN_RS17400
subclass of: SO_0000673
so part of: ALVIN_RS17400
location: complement(35292..35861)
location: region:35292-35861:-1
so has part: feature:35292-35861:-1:exon

WP_148217656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35292-35861:-1:exon

ALVIN_RS17405
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17405
old locus tag: Alvin_3298
so part of: sequence
location: complement(35927..36409)
location: region:35927-36409:-1
so has part: feature:35927-36409:-1:exon
subclass of: SO_0000010

position:35927:-1
position: 35927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36409:-1
position: 36409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35927-36409:-1:exon

ALVIN_RS17405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17405
old locus tag: Alvin_3298
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLFKLALIALAFMHGSAMAKCLPDPSFSDECRYPQGDAWCAEHDTNSPYAYSDQCLEKRSGNVAKAVIPQRFYGHWEQSVDACKNGSEIYVSIETTSFSTAAQYCELKKILTSSESYISGVFSCNVEDTGEYNENYTLQIKNGTLVVNDDDKNVFFYCK
SIO_010081: ALVIN_RS17405
subclass of: SO_0000673
so part of: ALVIN_RS17405
location: complement(35927..36409)
location: region:35927-36409:-1
so has part: feature:35927-36409:-1:exon

WP_012979613.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35927-36409:-1:exon

ALVIN_RS17415
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS17415
old locus tag: Alvin_3300
so part of: sequence
location: complement(36888..37481)
location: region:36888-37481:-1
so has part: feature:36888-37481:-1:exon
subclass of: SO_0000010

position:36888:-1
position: 36888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37481:-1
position: 37481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36888-37481:-1:exon

ALVIN_RS17415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS17415
old locus tag: Alvin_3300
inference: COORDINATES: protein motif:HMM:NF014180.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lipase, class 2
translation: MSDSKNIVLVHGIFDTERIFKNVSNLMTAHGYKTFSINLRPNYGIAGIEDLAFQLKIFAESKIPRGEQFSLIGFSMGGIVSRHYLQNLGGTNNVNKFIAVSSPHYGTVLSYLLPLKGSLQMRPGSTYLRNLNSNVDSLLPVRPVSFWTKYDQMIIPQKSAIMSVGDSVQMPIFPHRRMVTSKLASHALVECIRKNEF
SIO_010081: ALVIN_RS17415
subclass of: SO_0000673
so part of: ALVIN_RS17415
location: complement(36888..37481)
location: region:36888-37481:-1
so has part: feature:36888-37481:-1:exon

WP_012979615.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36888-37481:-1:exon

ALVIN_RS16370
type: Gene
subclass of: SO_0000704
RO_0002162: 572477
locus tag: ALVIN_RS16370
old locus tag: Alvin_3302
so part of: sequence
location: 39053..39898
location: region:39053-39898:1
so has part: feature:39053-39898:1:exon
subclass of: SO_0000010

position:39053:1
position: 39053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39898:1
position: 39898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39053-39898:1:exon

ALVIN_RS16370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572477
locus tag: ALVIN_RS16370
old locus tag: Alvin_3302
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MSKLKPIYVTKSNSLVEACYSLSLAELRILLATIAQIDSRPGAAPISSDTPFPLHASDLAKLFRVPSKQAYELLRDGASRLYERDVIIDAATTAHPNKYTKSRWVSAITYVEDEGYVDLYFAPKVLPFLTNLASEFTRYQIKHVAPMSSVYAIRLYELLKQWVKIGERQLSIDEIKTMLMIDNAYSSVTELKRWVVTPAVQQINKHSDLKVTMEQRKRGRTITALIFKIEAKREAQPPRKKSAAKPKLTREYVEKYAHPGESWEDAKARIQHLIDQGKTPA
SIO_010081: ALVIN_RS16370
subclass of: SO_0000673
so part of: ALVIN_RS16370
location: 39053..39898
location: region:39053-39898:1
so has part: feature:39053-39898:1:exon

WP_012979617.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39053-39898:1:exon