Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid pHD5AT, complete sequence.
type: Entry
definition: Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid pHD5AT, complete sequence.
sequence version: NC_012752.1
sequence date: 2023-02-22
sequence: sequence
division: CON
label: NC_012752.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02604135
keyword: RefSeq
source: Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
organism: Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; aphid secondary symbionts; Candidatus Hamiltonella.
reference: 1
references: 19451630
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001278.1.\nDNA Source: Nancy Moran, University of Arizona.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/22/2023 13:47:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,212\nCDSs (total) :: 2,158\nGenes (coding) :: 2,001\nCDSs (with protein) :: 2,001\nGenes (RNA) :: 54\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 41\nncRNAs :: 4\nPseudo Genes (total) :: 157\nCDSs (without protein) :: 157\nPseudo Genes (ambiguous residues) :: 1 of 157\nPseudo Genes (frameshifted) :: 64 of 157\nPseudo Genes (incomplete) :: 107 of 157\nPseudo Genes (internal stop) :: 32 of 157\nPseudo Genes (multiple problems) :: 39 of 157\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 59032
topology: circular
so has quality: SO_0000988
location: 1..59032
location: region:1-59032:1
RO_0002162: 572265

NC_012752
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02604135
type: BioSample
SIO_000068: biosample

1
title: Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors
author: Degnan, P.H.
author: Yu, Y.
author: Sisneros, N.
author: Wing, R.A.
author: Moran, N.A.
journal: Proc Natl Acad Sci U S A
volume: 106
issue: 22
pages: 9063-9068
year: 2009
pubmed: 19451630

19451630
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Degnan, P.H.
author: Moran, N.A.
journal: Submitted (05-DEC-2008) Department of Ecology and Evolutionary Biology, University of Arizona, 1041 E Lowell St, Tucson, AZ 85721-0088, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59032:1
position: 59032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-59032:1:source
so part of: sequence
organism: Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
mol type: genomic DNA
strain: T5A
host: Acyrthosiphon pisum
plasmid: pHD5AT
country: USA:Madison, WI
note: secondary endosymbiont of aphids

572265
type: Taxonomy
SIO_000068: taxonomy

HDEF_RS10520
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: repA
locus tag: HDEF_RS10520
old locus tag: HDEF_p0001
so part of: sequence
location: 1..840
location: region:1-840:1
so has part: feature:1-840:1:exon
subclass of: SO_0000010

66261833
type: Gene
SIO_000068: ncbigene

position:840:1
position: 840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-840:1:exon

HDEF_RS10520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: repA
locus tag: HDEF_RS10520
old locus tag: HDEF_p0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012738240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator RepA
translation: MTRKSYVFNASPVFTPPASEKQRPAFIRYAMQCASDKDVARSELLYILQGTIPTRSRRLNEHRARALRAMALAMLYHFNIASGLVMASVEQLSDECGLSTVSDAGNKSITRASRLLTDFLEPMGFVHCEKVWDRIMESYIPKLITLTPLFFLLFDVSSEKLEKAQHQQMGWINKGLMEKGEESITLVEARRRAKEQHIKRAFEYRKSLHAMNKKRKLARRMAKLDEQTAKQTLLQKIIQRYSLVELNEMGPKGLRNQVNMEYHHLRKVASTPTPDIPVH
SIO_010081: HDEF_RS10520
subclass of: SO_0000673
so part of: HDEF_RS10520
location: 1..840
location: region:1-840:1
so has part: feature:1-840:1:exon

WP_012738240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-840:1:exon

HDEF_RS12680
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS12680
so part of: sequence
location: 1511..1654
location: region:1511-1654:1
so has part: feature:1511-1654:1:exon
subclass of: SO_0000010

66262101
type: Gene
SIO_000068: ncbigene

position:1511:1
position: 1511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1654:1
position: 1654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1511-1654:1:exon

HDEF_RS12680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS12680
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVVNRSCVFIMVGRSGGAEKLAGFFRTSLRTLLRLATRFEAAWRGF
SIO_010081: HDEF_RS12680
subclass of: SO_0000673
so part of: HDEF_RS12680
location: 1511..1654
location: region:1511-1654:1
so has part: feature:1511-1654:1:exon

WP_171770503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1511-1654:1:exon

HDEF_RS10530
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10530
so part of: sequence
location: 1856..2131
location: region:1856-2131:1
so has part: feature:1856-2131:1:exon
subclass of: SO_0000010

66261834
type: Gene
SIO_000068: ncbigene

position:1856:1
position: 1856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2131:1
position: 2131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1856-2131:1:exon

HDEF_RS10530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873553.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LuxR C-terminal-related transcriptional regulator
translation: MRTFDLKQIKKFQKVFPELNTTEQLETAMLFSLGLTKKEIAAMRDVSYRTVEVMLDNIKKRCQAHSLNTIMTLFQVRLVFFALSGCTVEDQ
SIO_010081: HDEF_RS10530
subclass of: SO_0000673
so part of: HDEF_RS10530
location: 1856..2131
location: region:1856-2131:1
so has part: feature:1856-2131:1:exon

WP_044612605.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1856-2131:1:exon

HDEF_RS10535
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10535
old locus tag: HDEF_p0004
so part of: sequence
location: 2320..2982
location: region:2320-2982:1
so has part: feature:2320-2982:1:exon
subclass of: SO_0000010

66261835
type: Gene
SIO_000068: ncbigene

position:2320:1
position: 2320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2982:1
position: 2982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2320-2982:1:exon

HDEF_RS10535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10535
old locus tag: HDEF_p0004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006703981.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain-containing protein
translation: MNFNPKDILNNHLHPCHIRDKASRYVYMNLAMRELFNVPTGVPIEGKRLSEIKPDISEFFESLHQQEERVIQKETSVSLLITAHFGKENRLQPTIVDIHPFFDETGQLVGTLAEARQCQFFSALDYLQGKSPKTLTTSLPNTIFTQNELQIIFYAYNALSSKEVAKSLHLSRRAADNKLEGIDEKMGIHHQKGFRKYIQDSGLNKFIPQHLLASSIQVID
SIO_010081: HDEF_RS10535
subclass of: SO_0000673
so part of: HDEF_RS10535
location: 2320..2982
location: region:2320-2982:1
so has part: feature:2320-2982:1:exon

WP_044612606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2320-2982:1:exon

HDEF_RS10540
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: mutL
locus tag: HDEF_RS10540
old locus tag: HDEF_p0005
so part of: sequence
location: complement(3239..5011)
location: region:3239-5011:-1
so has part: feature:3239-5011:-1:exon
subclass of: SO_0000010

66261836
type: Gene
SIO_000068: ncbigene

position:3239:-1
position: 3239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5011:-1
position: 5011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3239-5011:-1:exon

HDEF_RS10540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: mutL
locus tag: HDEF_RS10540
old locus tag: HDEF_p0005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873804.1
GO function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO process: GO:0006298 - mismatch repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA mismatch repair endonuclease MutL
translation: MPIKILPTELANQIAAGEVVERPASVVKELVENSLDAGATKMEIDIHRGGIEQIQICDNGCGISKEDLPLALARHATDKIASLEDLQSILSMGFRGEALASISSVSRLQLTSRPAEQEDAWQAYTEGRDMNVTIKPASHPVGSTIEVLNLFYNTPARRKFLRTEKTEWQYIDEVVRRLALSRFDVSISLSHNGKLLRQYVRVQSGSQRERRLLRLCGAPFLKQALALSFDHSGLSLKGWIAEANGPKMNEIQYFFINRRIIRDRVVNHAVRQAYEAISTGPKNPSYVLYLDIDPRQIDVNVHPTKQEVRFHQTRLVHDFIYHAITNALSHSACSSSDSSADIEQNDSVVKESPKICKENRASAGRNTYVEPDIITKQTDEASLSFHDTSRTEHKETSLKKDILGEVNEHYFWRVLSIVSSCYALIEYGNNIALLSLPEADRLLKKVGLTPPSEKSLIQPLLIPVKFTLEKAEMMACERHQHLLTLIGIELVIEKDTTVLRGISLALRAHNMQKLIPKLLLYLSAHDTLLLENFADWVASQLQSLPHEWTVSQAVQLLTDFERCCPEFIKAPSEKLLQWIDIQPALARLTH
SIO_010081: HDEF_RS10540
subclass of: SO_0000673
so part of: HDEF_RS10540
location: complement(3239..5011)
location: region:3239-5011:-1
so has part: feature:3239-5011:-1:exon

WP_012738242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3239-5011:-1:exon

HDEF_RS12685
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS12685
so part of: sequence
location: 5056..5193
location: region:5056-5193:1
so has part: feature:5056-5193:1:exon
subclass of: SO_0000010

66262102
type: Gene
SIO_000068: ncbigene

position:5056:1
position: 5056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5193:1
position: 5193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5056-5193:1:exon

HDEF_RS12685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS12685
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVTEALCKITVNVFSSGGKRCPEVYESSVARLRSHLGAPLLILHS
SIO_010081: HDEF_RS12685
subclass of: SO_0000673
so part of: HDEF_RS12685
location: 5056..5193
location: region:5056-5193:1
so has part: feature:5056-5193:1:exon

WP_171770504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5056-5193:1:exon

HDEF_RS10545
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10545
old locus tag: HDEF_p0006
so part of: sequence
location: complement(5253..6356)
location: region:5253-6356:-1
so has part: feature:5253-6356:-1:exon
subclass of: SO_0000010

66261837
type: Gene
SIO_000068: ncbigene

position:5253:-1
position: 5253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6356:-1
position: 6356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5253-6356:-1:exon

HDEF_RS10545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10545
old locus tag: HDEF_p0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873589.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cupin domain-containing protein
translation: MHLIINWEDFLHHHWQKRPVLLKQSISDFVNPISPEELETLVIKKALECQLIQRSHGKCQLGYQAFNGYGSLGQRNWSLRVEALHHCHRAAEEFLSLFRIFPDWYTEELTTFFSVPGGGIGPQTRPSDVLVIQGMGSSRWRVGDRGASPAFDYGQNDFSEAMVDEELSAGDMLYIPKVFPHEATSTEAAMSYCLNFWTDNSLRMIRNWTESLSDENHRGIEYAPSPDLLLRDDPTEILPQDITALQEMMSQFLLKKREHLENWFAQEMSQTSYELPKAPAAKVYSVSQVQTLLQKGSRLNRLMGLRMLHIGNRYFVNGESLDSDHADAWNVLARHRTIEGPMLIKFINEADFLAELTLIINKGYWYF
SIO_010081: HDEF_RS10545
subclass of: SO_0000673
so part of: HDEF_RS10545
location: complement(5253..6356)
location: region:5253-6356:-1
so has part: feature:5253-6356:-1:exon

WP_012738243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5253-6356:-1:exon

HDEF_RS10550
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10550
old locus tag: HDEF_p0007
so part of: sequence
location: 6732..7292
location: region:6732-7292:1
so has part: feature:6732-7292:1:exon
subclass of: SO_0000010

66261838
type: Gene
SIO_000068: ncbigene

position:6732:1
position: 6732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7292:1
position: 7292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6732-7292:1:exon

HDEF_RS10550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10550
old locus tag: HDEF_p0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000147566.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTGQRIGYIRVSTFDQNSERQLEGITVDRIFTDKASGKDIKRPELEALLSFVRSGDTVLVHSMDRLARNLDDLHRLVQLLTQRGVRIEFCKEHLSFTGEDSPMANLMLSVMGAFAEFERSLIKERQREGIALAKQRGAYRGRKKSLSESEMTELYRRVVAGDKKAQVARDLGISRETLYQYLKRGE
SIO_010081: HDEF_RS10550
subclass of: SO_0000673
so part of: HDEF_RS10550
location: 6732..7292
location: region:6732-7292:1
so has part: feature:6732-7292:1:exon

WP_012738244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6732-7292:1:exon

HDEF_RS10555
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10555
so part of: sequence
location: 7657..7893
location: region:7657-7893:1
so has part: feature:7657-7893:1:exon
subclass of: SO_0000010

66261839
type: Gene
SIO_000068: ncbigene

position:7657:1
position: 7657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7893:1
position: 7893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7657-7893:1:exon

HDEF_RS10555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006704027.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB family transcriptional regulator
translation: MSTFNTRQFRAGNSQAVRIPAKMAFPPQTELVVYREGNRIIVEPKERTLGDIPRILHTLNQNFIGRRPEFEENKRDWS
SIO_010081: HDEF_RS10555
subclass of: SO_0000673
so part of: HDEF_RS10555
location: 7657..7893
location: region:7657-7893:1
so has part: feature:7657-7893:1:exon

WP_015874453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7657-7893:1:exon

HDEF_RS10560
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10560
old locus tag: HDEF_p0008
so part of: sequence
location: 7890..8285
location: region:7890-8285:1
so has part: feature:7890-8285:1:exon
subclass of: SO_0000010

66261840
type: Gene
SIO_000068: ncbigene

position:7890:1
position: 7890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8285:1
position: 8285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7890-8285:1:exon

HDEF_RS10560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10560
old locus tag: HDEF_p0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006704028.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MKKYMLDTNICIYLIKKCPPEIVKKFDNYRKGEIIISAITWAELCCGIKKEGRDTVENLLSVLDVEPFGIKQADKYGELTHFFPNRKANLDRMIAAHAISLNVTLVTNNIDDFCSYTRVGLSIENWVSSHK
SIO_010081: HDEF_RS10560
subclass of: SO_0000673
so part of: HDEF_RS10560
location: 7890..8285
location: region:7890-8285:1
so has part: feature:7890-8285:1:exon

WP_012738245.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7890-8285:1:exon

HDEF_RS11230
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS11230
pseudo: true
so part of: sequence
location: complement(8564..9188)
location: region:8564-9188:-1
so has part: feature:8564-9188:-1:exon
subclass of: SO_0000010

66261925
type: Gene
SIO_000068: ncbigene

position:8564:-1
position: 8564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9188:-1
position: 9188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8564-9188:-1:exon

HDEF_RS11230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS11230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000470624.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: HDEF_RS11230
subclass of: SO_0000673
so part of: HDEF_RS11230
location: complement(8564..9188)
location: region:8564-9188:-1
so has part: feature:8564-9188:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8564-9188:-1:exon

HDEF_RS10570
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10570
pseudo: true
so part of: sequence
location: complement(<9515..>9826)
location: region:9515-9826:-1
so has part: feature:9515-9826:-1:exon
subclass of: SO_0000010

66261841
type: Gene
SIO_000068: ncbigene

position:9515:-1
position: 9515
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:9826:-1
position: 9826
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9515-9826:-1:exon

HDEF_RS10570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002209739.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: epimerase
SIO_010081: HDEF_RS10570
subclass of: SO_0000673
so part of: HDEF_RS10570
location: complement(<9515..>9826)
location: region:9515-9826:-1
so has part: feature:9515-9826:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9515-9826:-1:exon

HDEF_RS10575
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10575
old locus tag: HDEF_p0010
so part of: sequence
location: 10605..11243
location: region:10605-11243:1
so has part: feature:10605-11243:1:exon
subclass of: SO_0000010

66261842
type: Gene
SIO_000068: ncbigene

position:10605:1
position: 10605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11243:1
position: 11243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10605-11243:1:exon

HDEF_RS10575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10575
old locus tag: HDEF_p0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005918230.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRVSIVNTKGGVGKTTTAVHLATYLSSLASTLLIDGDPQESAATWAAWRRESLVKRSRHLSLTTTCLHGKAIYDEGKSLSKGFVHTVIDAGGRDAPGLRNALLLSEMAIIPIGASNLDAAAMTDLLEVLDLATDYNPKLKVKVLLSRIDPRTKDAKEMLKFLNENNLEVLSARVCERVSFRRAIGEGSTVEELGKDSVAISEMSAFYKEVLL
SIO_010081: HDEF_RS10575
subclass of: SO_0000673
so part of: HDEF_RS10575
location: 10605..11243
location: region:10605-11243:1
so has part: feature:10605-11243:1:exon

WP_012738246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10605-11243:1:exon

HDEF_RS10580
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10580
old locus tag: HDEF_p0011
so part of: sequence
location: 11240..11476
location: region:11240-11476:1
so has part: feature:11240-11476:1:exon
subclass of: SO_0000010

66261843
type: Gene
SIO_000068: ncbigene

position:11240:1
position: 11240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11476:1
position: 11476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11240-11476:1:exon

HDEF_RS10580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10580
old locus tag: HDEF_p0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015874472.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKKPSLDEFRSGGGEIVKEKSNETYSVSERMNKTIRLRKIFEKKLKENAFHRSMKENRRVTESDIIDEALEKYFDIL
SIO_010081: HDEF_RS10580
subclass of: SO_0000673
so part of: HDEF_RS10580
location: 11240..11476
location: region:11240-11476:1
so has part: feature:11240-11476:1:exon

WP_012738247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11240-11476:1:exon

HDEF_RS10585
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10585
so part of: sequence
location: complement(11926..12186)
location: region:11926-12186:-1
so has part: feature:11926-12186:-1:exon
subclass of: SO_0000010

66261844
type: Gene
SIO_000068: ncbigene

position:11926:-1
position: 11926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12186:-1
position: 12186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11926-12186:-1:exon

HDEF_RS10585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASKKYYTVEQLEKAKEMLEELPDLKKIRFTKDDVLENLKSQIIKLALNKGYVSEDIKSALESAGIKVGLKAIQKIISDKKKKNNH
SIO_010081: HDEF_RS10585
subclass of: SO_0000673
so part of: HDEF_RS10585
location: complement(11926..12186)
location: region:11926-12186:-1
so has part: feature:11926-12186:-1:exon

WP_044612607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11926-12186:-1:exon

HDEF_RS10590
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: mobA
locus tag: HDEF_RS10590
old locus tag: HDEF_p0012
so part of: sequence
location: 12646..12954
location: region:12646-12954:1
so has part: feature:12646-12954:1:exon
subclass of: SO_0000010

66261845
type: Gene
SIO_000068: ncbigene

position:12646:1
position: 12646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12954:1
position: 12954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12646-12954:1:exon

HDEF_RS10590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: mobA
locus tag: HDEF_RS10590
old locus tag: HDEF_p0012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873284.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization protein MobA
translation: MSQSEKRQRTQLLLGILCTPEEKKLIQEKAEASGLSVGEFLRRCALGRRITPKTDVKLISELSKTGLLQKQLFNEGKGVHSQEYSDILVALKKAILKIDFKE
SIO_010081: HDEF_RS10590
subclass of: SO_0000673
so part of: HDEF_RS10590
location: 12646..12954
location: region:12646-12954:1
so has part: feature:12646-12954:1:exon

WP_012738248.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12646-12954:1:exon

HDEF_RS10595
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10595
old locus tag: HDEF_p0013
so part of: sequence
location: 12958..14850
location: region:12958-14850:1
so has part: feature:12958-14850:1:exon
subclass of: SO_0000010

66261846
type: Gene
SIO_000068: ncbigene

position:12958:1
position: 12958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14850:1
position: 14850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12958-14850:1:exon

HDEF_RS10595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10595
old locus tag: HDEF_p0013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012738249.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraI/MobA(P) family conjugative relaxase
translation: MVVVIPKKRRDGKSSFLKLVFYLSFREDNPGDIPVTADAFFDRPSTSKIAVFDRLIDYIDRHASPESQQLITHLPDGSHRILCEGVLCQTNTLSIETASSEMNAMASNNRRCLDPVYHFILSWPEEEKPEDSHIFDSALFCLKEMGMVDHQYVFAIHRDTDNLHCHVAANRIHPLSYRAVNLYNDVKILHKACRKLELKYDWKPDNGCWKRDQNHQIIRAESQYPSAPRASTQFEYHEDKESFYSYVVRTCRTELTSILKGPLQEWEEVHAVFLRAHLELKKKGSGLAIYDKNCPNNVPLKASSLHPQLTLSKLVPRIGEFENAPRVMEFKNEQGEVTLTNYMVSSHYDDRLHLRDHQARMTRRLERAEAREELKLRYQNDKKEAKCPSFDAKNRFRTLSMTFRFRRAHVCVAVRDPLMRKLAWHVLAFEREKAMAELRLKLKEERENWYRSPENRRLSYRVWVEQQALKGDKAAISQLRGWAYQAKRDERTAYLSDTVIECAVSDDIAPVELKGYTHHIHRDGAILYKKEGVTQMIDRGETIEMARPFENEGDNMVAGLRLAEQKSGEKRVFSGPREYVEKACSLVRDLNEMGETSLTLTDSLQQKRVCEMRPQDNPAPISFDSPNLTP
SIO_010081: HDEF_RS10595
subclass of: SO_0000673
so part of: HDEF_RS10595
location: 12958..14850
location: region:12958-14850:1
so has part: feature:12958-14850:1:exon

WP_012738249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12958-14850:1:exon

HDEF_RS10600
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10600
old locus tag: HDEF_p0014
so part of: sequence
location: 14981..15322
location: region:14981-15322:1
so has part: feature:14981-15322:1:exon
subclass of: SO_0000010

66261847
type: Gene
SIO_000068: ncbigene

position:14981:1
position: 14981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15322:1
position: 15322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14981-15322:1:exon

HDEF_RS10600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10600
old locus tag: HDEF_p0014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012737993.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMSRHPKTGEKIKTPAREVPVFSAGKRLKASVHLQSPKETQVAKKSKSGAKKKSSV
SIO_010081: HDEF_RS10600
subclass of: SO_0000673
so part of: HDEF_RS10600
location: 14981..15322
location: region:14981-15322:1
so has part: feature:14981-15322:1:exon

WP_012738250.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14981-15322:1:exon

HDEF_RS10605
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10605
old locus tag: HDEF_p0015
so part of: sequence
location: complement(15584..16510)
location: region:15584-16510:-1
so has part: feature:15584-16510:-1:exon
subclass of: SO_0000010

66261848
type: Gene
SIO_000068: ncbigene

position:15584:-1
position: 15584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16510:-1
position: 16510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15584-16510:-1:exon

HDEF_RS10605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10605
old locus tag: HDEF_p0015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857839.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
translation: MKISTPHDRLFKKFFGDIALARNFFEIHLPSSILKIVSFPSLKMVPGSFIDKSLKQSHSDMVYSFETSTGKEGYLYCVVEHQSTDDKMMAFRMKKYSLAVMQQHLDQGHDTLPLVLPVLFYHGQKSPYPHSMDWRDCFCEKELARILDSQPFPLVDVTMLPEEEIMKHGIISWLEMSQKMVHTRDMMEIAPYLIRLDKLFPLNDELFKSLLYYLFQEGETADRMLFFDALSSTTQRENVMTIAEELKREGREEGREEGREEGREEGREEGREEGREEIAKNLLNNGFSFKQVKMYTGLSEDSLNKLLD
SIO_010081: HDEF_RS10605
subclass of: SO_0000673
so part of: HDEF_RS10605
location: complement(15584..16510)
location: region:15584-16510:-1
so has part: feature:15584-16510:-1:exon

WP_012738251.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15584-16510:-1:exon

HDEF_RS10615
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10615
so part of: sequence
location: complement(17231..18214)
location: region:17231-18214:-1
so has part: feature:17231-18214:-1:exon
subclass of: SO_0000010

66261849
type: Gene
SIO_000068: ncbigene

position:17231:-1
position: 17231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18214:-1
position: 18214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17231-18214:-1:exon

HDEF_RS10615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873280.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbC
translation: MHRVSGNKVSDQPYPFSRDFCGATFTSHTLSQDLGGQLEGKREDVLLSQKFAQKFPYPIIFDELGAYFASGLDKTAAQMRSLQYMLMIAAQDVQSMMDKSMREFLTVSANQRTKWFMALEDAQDTFNLIRSAAGKGYYSELSSVKRKGSLSGSRYEDADTHHIRERDNIELTELKALNKGEGVIVFQDAVVRSAAIFIPDEEKLSSKLPLRINRFIELKRPDFDALCEVVPELRHQGAAFKQEVNGILKKLEQPPQKKARMEDKTLMSVATLALNLDNRNDLSYTPEERGILLFEAARHALKKTQGQYTMEKEPKEIALNDLKKNID
SIO_010081: HDEF_RS10615
subclass of: SO_0000673
so part of: HDEF_RS10615
location: complement(17231..18214)
location: region:17231-18214:-1
so has part: feature:17231-18214:-1:exon

WP_238526193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17231-18214:-1:exon

HDEF_RS10620
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: ltrA
locus tag: HDEF_RS10620
old locus tag: HDEF_p0017
so part of: sequence
location: 18712..20394
location: region:18712-20394:1
so has part: feature:18712-20394:1:exon
subclass of: SO_0000010

66261850
type: Gene
SIO_000068: ncbigene

position:18712:1
position: 18712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20394:1
position: 20394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18712-20394:1:exon

HDEF_RS10620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: ltrA
locus tag: HDEF_RS10620
old locus tag: HDEF_p0017
EC number: 2.7.7.49
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873279.1
GO function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0000373 - Group II intron splicing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: group II intron reverse transcriptase/maturase
translation: MPMANVINQNYEQQLEWHAINWRVVTAMINNLRQRIYRASATGDLKKVRNLQKLMMKSRANHLLAIRKVTQVNRGKHTAGVDNQVINDHKGREHLYKLLSQTTSEKVYPVKRVYIAKKNGKKRPLGIPTILDRCRQAIVKSALEPYWEAKFEPVSYGFRPGRSAHDAIQKIFCIARARGTRHWVLDADIKGAFDNIDHNFLIKKIGGFPERNMIKQWLQAGVLEHGNYIPNVAGTPQGGIISPLLANIALHGMETLLGIQYWKNGTPKQGQPYAVVRYADDFVVFGKSREECETAKIKLQIWLAQRGLALSEEKTSIKHLKEGFDFLGFNIRHYDNRHRKRGYILLTKPSKESMKRYKQQMRMTWKGIIGMPTQEGIRQLNAKIIGWCNYYRIGASKRTFSALDQWMWIRQRRYLYRRHPNKHWWWRRKHYLGKIPGREDYSVFMDKSTGGFLWKHAWTKIQRHWLVPKNASPDNPELRDYWRNRQARKQPFIYGVKVNLYKRQKGYCPLCDQELDNGEQLHVHHIQPKAEGGDNKLANLRLLHANCHRQLHSKKGKMLK
SIO_010081: HDEF_RS10620
subclass of: SO_0000673
so part of: HDEF_RS10620
location: 18712..20394
location: region:18712-20394:1
so has part: feature:18712-20394:1:exon

WP_012738021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18712-20394:1:exon

HDEF_RS10625
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10625
so part of: sequence
location: complement(20467..21714)
location: region:20467-21714:-1
so has part: feature:20467-21714:-1:exon
subclass of: SO_0000010

66261851
type: Gene
SIO_000068: ncbigene

position:20467:-1
position: 20467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21714:-1
position: 21714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20467-21714:-1:exon

HDEF_RS10625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10625
inference: COORDINATES: protein motif:HMM:NF014581.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MNKRPSSLDPHRINRPVFNPSLTDTVLSPTGVQWGFLIALVVGCVWPVTLLIGLPACVILLIIFCDRPFRMPIRLPTDIGGPDLTTEREGFKARKGGAGLFSFITRTRHCEQAAGILCLGYARGKSLARELWLNLDDALRHIQLIATTGAGKTEAILSVYLNALCWGRGMCLSDGKAENRLAFAVWSLARRFGREDDVYVLNFLTAGNSKFSNLVKGDQSRPQSNSINLFANASETFIIQLMDSLLPKVGSNENGWQEKAKAMIAALIYALCYKREKDGLFLSQRVIQDYLPLRKIVTLYQEAKENGWHEEGYKPLEHYLNTLAGFDMALIDSPLEWSKTVWEQHGFLIQQFTRMLSLFNDIYGQVFPQGAGDIDLKDVLHNDRILVVLIPALELSNSEAATLGKLYISGLRMIR
SIO_010081: HDEF_RS10625
subclass of: SO_0000673
so part of: HDEF_RS10625
location: complement(20467..21714)
location: region:20467-21714:-1
so has part: feature:20467-21714:-1:exon

WP_238526195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20467-21714:-1:exon

HDEF_RS10630
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10630
old locus tag: HDEF_p0018
so part of: sequence
location: complement(21707..22597)
location: region:21707-22597:-1
so has part: feature:21707-22597:-1:exon
subclass of: SO_0000010

66261852
type: Gene
SIO_000068: ncbigene

position:21707:-1
position: 21707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22597:-1
position: 22597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21707-22597:-1:exon

HDEF_RS10630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10630
old locus tag: HDEF_p0018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873487.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DsbC family protein
translation: MTTRIDDADRGSVLFTCSLGKEPHFFIRQNSLIFRQKHQKDLVLFSDSESPDKAQHLLNALTEALVRRQKTKLFWRNLFFGLGFLALLAIGSHGLLSETHTTDDIPLARADSASAPLLPEENAIEKGLMQEPSPALTTLAHNLRDAAQRKIFTVPLTTGHSRTIYVFSDPLCPHCRDLEPTLEAIGKKVNIDLFPVSLIGKKATADQVIPVLCASPEHRKALWHSLFDDPPLTPSASCDIGEKALAVNNKAFSAYGFRGTPQLISDDGRPIPLSALKNEDTFSSFMNAEPQEKKDE
SIO_010081: HDEF_RS10630
subclass of: SO_0000673
so part of: HDEF_RS10630
location: complement(21707..22597)
location: region:21707-22597:-1
so has part: feature:21707-22597:-1:exon

WP_238526197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21707-22597:-1:exon

HDEF_RS10635
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10635
old locus tag: HDEF_p0019
so part of: sequence
location: complement(22715..23824)
location: region:22715-23824:-1
so has part: feature:22715-23824:-1:exon
subclass of: SO_0000010

66261853
type: Gene
SIO_000068: ncbigene

position:22715:-1
position: 22715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23824:-1
position: 23824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22715-23824:-1:exon

HDEF_RS10635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10635
old locus tag: HDEF_p0019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857858.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKHRFSPPENDGFLLLSAFIGVSVIFWFFLEEVIYWSCAALYHLWRACDVPLMHSFAAPRMNLLAHTANRADNVTILHWLAVMNQTAGIVLLFLIPLCLLAIHVTLTHPANKTRREISIHSLPKIMARFSPSVIPALCYGDRKTQLLNTNPPEHQSALSPEEFAHKHHLVLNQRLDHEKAQVVFTQQLGRKITQLSEFNAYERALWAIFGWPFFFNDRQEAQKLLDTLNRSCLIKSRRDKGQIGTPVFSIAHKAFKKVSGHPDAKNWIKKHPYARTALSALHANDLHLPTARFRWLKGLDRPLWYALCSSDRPKPFIEGAGIVTQMQWEQEAAKHKVTLPSPVLRYAVQGLEKDLIHIGKVIDDRIKK
SIO_010081: HDEF_RS10635
subclass of: SO_0000673
so part of: HDEF_RS10635
location: complement(22715..23824)
location: region:22715-23824:-1
so has part: feature:22715-23824:-1:exon

WP_012738254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22715-23824:-1:exon

HDEF_RS10640
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10640
old locus tag: HDEF_p0020
so part of: sequence
location: 23938..24207
location: region:23938-24207:1
so has part: feature:23938-24207:1:exon
subclass of: SO_0000010

66261854
type: Gene
SIO_000068: ncbigene

position:23938:1
position: 23938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24207:1
position: 24207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23938-24207:1:exon

HDEF_RS10640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10640
old locus tag: HDEF_p0020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019080654.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNTMSQKKAREGLGAPELFQGGVFVTKNGVAELFVQPASERVAELAEREKERQANSLFKLVMMARQDIDTGDIMPPEKAIERLRADRK
SIO_010081: HDEF_RS10640
subclass of: SO_0000673
so part of: HDEF_RS10640
location: 23938..24207
location: region:23938-24207:1
so has part: feature:23938-24207:1:exon

WP_044612608.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23938-24207:1:exon

HDEF_RS10645
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10645
old locus tag: HDEF_p0021
so part of: sequence
location: 24220..24558
location: region:24220-24558:1
so has part: feature:24220-24558:1:exon
subclass of: SO_0000010

66261855
type: Gene
SIO_000068: ncbigene

position:24220:1
position: 24220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24558:1
position: 24558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24220-24558:1:exon

HDEF_RS10645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10645
old locus tag: HDEF_p0021
inference: COORDINATES: protein motif:HMM:NF016876.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MLTVYVTESAFRCLSDIEAFKMESMGIMGIKEAAHFIEALLLDAVKYLQEAPERYRFNPVLADFGLRVRERHDQKRGYRILYEIREHSIYILLILHKRQDLLTALYRHQMLK
SIO_010081: HDEF_RS10645
subclass of: SO_0000673
so part of: HDEF_RS10645
location: 24220..24558
location: region:24220-24558:1
so has part: feature:24220-24558:1:exon

WP_044612609.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24220-24558:1:exon

HDEF_RS10650
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: excA
locus tag: HDEF_RS10650
old locus tag: HDEF_p0022
so part of: sequence
location: complement(24581..25216)
location: region:24581-25216:-1
so has part: feature:24581-25216:-1:exon
subclass of: SO_0000010

66261856
type: Gene
SIO_000068: ncbigene

position:24581:-1
position: 24581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25216:-1
position: 25216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24581-25216:-1:exon

HDEF_RS10650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: excA
locus tag: HDEF_RS10650
old locus tag: HDEF_p0022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857860.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid IncI1-type surface exclusion protein ExcA
translation: MRNKKXVGGALAFLSMAFYILAGIPFFLFVGAMSSWMASDISNPWRDRDILYANLSLAALVIPLTWCILSYINKRRHMAKILSVIKSDESYDPAPENEIREMHSSAYFGIDPKRGTMLYIRLFNKKEIDIFGFNVSNWRQCELTGNNKLRLYLNSTEVPFIDIQNNNAWLLYEKLCVMRNQNYHYPYHFPGYVEDSTKHLSKKMGFKMLPC
SIO_010081: HDEF_RS10650
subclass of: SO_0000673
so part of: HDEF_RS10650
location: complement(24581..25216)
location: region:24581-25216:-1
so has part: feature:24581-25216:-1:exon

WP_044612610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24581-25216:-1:exon

HDEF_RS10655
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10655
old locus tag: HDEF_p0023
so part of: sequence
location: complement(25287..27434)
location: region:25287-27434:-1
so has part: feature:25287-27434:-1:exon
subclass of: SO_0000010

66261857
type: Gene
SIO_000068: ncbigene

position:25287:-1
position: 25287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27434:-1
position: 27434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25287-27434:-1:exon

HDEF_RS10655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10655
old locus tag: HDEF_p0023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857861.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DotA/TraY family protein
translation: MKKGLRLVSVFSLIVCSPQIFAEEVNFQHLSDAAKRSGDLSRQMLVMIFGDIVNNPLHPTHTTMIGELFFVFNSLIATIALFWFITVTLRQMVQAGHQGQVFRSGRSPLYPVTVLLGFLSLVPTSSGWSLSQLIVLWAASIMGVGSANLITDKAATLLQGGHSLVMQPIAPQTLTASRAIFEMNLCMYGINEELHRMYSESGPAKGTPYMRIKTLPEGFIISNGSAQCGSARLPVTPKNTHWTPLFSVPVNTAPLVLAQNQSLNRMQNQLSKAAYEFVQQFKKKLDTGTGKIEDVESQIQKAAREYEDHIRQEVRAMNHETQLQDVVAAQLRQYGWLALGSWYQTFATANNKTNAVVNMRPTVTGMSKLGEIGVGSYHEKLTVAYRAQIQNSTYTAPLGTQSSKDSQKVSEASDASSLLIGLTSSWGQATIRQIVNTNFDSKNDSNNQMNPLLKMKAIGDYTLGGATSIFGAYTGAKLFTAWGKGNLAGNVINIITGAGDVADSLLQAIGPIVYFLVFILLSIGFSLSVYLPFIPFIYWISAATNWIVGVLIGATAGSLWAATHLGGEEDRGSRSAYGYVFLIDVMLRPMLMVFGFLFASLVVVAVGTLLNTLFASALANVQADSITGLISIVGVLMIYARICTTLVSSAFSLQVSMPDYVISWLGGREGASMLGGMNESIKGMFANFGSGAKTAPSPKKLVPKPTAHDQEDGIK
SIO_010081: HDEF_RS10655
subclass of: SO_0000673
so part of: HDEF_RS10655
location: complement(25287..27434)
location: region:25287-27434:-1
so has part: feature:25287-27434:-1:exon

WP_012738258.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25287-27434:-1:exon

HDEF_RS10660
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: traX
locus tag: HDEF_RS10660
old locus tag: HDEF_p0024
so part of: sequence
location: complement(27536..28084)
location: region:27536-28084:-1
so has part: feature:27536-28084:-1:exon
subclass of: SO_0000010

66261858
type: Gene
SIO_000068: ncbigene

position:27536:-1
position: 27536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28084:-1
position: 28084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27536-28084:-1:exon

HDEF_RS10660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: traX
locus tag: HDEF_RS10660
old locus tag: HDEF_p0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873481.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraX
translation: MNKPDSRLKRGLKASTYFLNILLPLSETRRIAQVSIRPWMTLMNRIQGLYPQKSENKQVTLSLSWQDAVRDSGFTPAQLQQQYRASKYRWVCVFILPMGLLVLLMGALLFNAHTLPMMIWIKASFFALIGMAVSALGFVRALICEYRLWQLREKRVSKEERGEFRAFLEETAWIKKTLNIKR
SIO_010081: HDEF_RS10660
subclass of: SO_0000673
so part of: HDEF_RS10660
location: complement(27536..28084)
location: region:27536-28084:-1
so has part: feature:27536-28084:-1:exon

WP_015873073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27536-28084:-1:exon

HDEF_RS10665
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: traW
locus tag: HDEF_RS10665
old locus tag: HDEF_p0025
so part of: sequence
location: complement(28077..29270)
location: region:28077-29270:-1
so has part: feature:28077-29270:-1:exon
subclass of: SO_0000010

66261859
type: Gene
SIO_000068: ncbigene

position:28077:-1
position: 28077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29270:-1
position: 29270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28077-29270:-1:exon

HDEF_RS10665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: traW
locus tag: HDEF_RS10665
old locus tag: HDEF_p0025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002556016.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraW
translation: MKKIFLTGTLLLAGHALAMPVEVTHSLPISTQVVPALSAINATLAQIAATEFQIGTAINQNSNKLASMLAETAKNQRDQDTFIRKTQRLEAARRSYTVPKSICSESASGMATQVAANATATQSHLAKGNGMAHRHIQTAIKTSAEPVEQEQFRAAKIHADYCSAEEYAASGGAPLCQKISELPNGDIELRSVLSGAGKVGSDPALTLTQAQTDAAMMYLKNTAQRSAGDPLKKGELNTASGQQYQGLLHQYQAIVSAASHPQRALIAASQASPQTRAVLRETLQTPSAAAYFEQQASPEAKRTQNLSQREFEFFEVGRRYANTDYLTDLQSMSGDNLIRESIRIQNLQNWLLLGIKQQLQEGNILQGQQLGLQAVQEFRPLLHQKRQHISAGVSRNE
SIO_010081: HDEF_RS10665
subclass of: SO_0000673
so part of: HDEF_RS10665
location: complement(28077..29270)
location: region:28077-29270:-1
so has part: feature:28077-29270:-1:exon

WP_015873074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28077-29270:-1:exon

HDEF_RS10670
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10670
old locus tag: HDEF_p0027
so part of: sequence
location: complement(29286..32342)
location: region:29286-32342:-1
so has part: feature:29286-32342:-1:exon
subclass of: SO_0000010

66261860
type: Gene
SIO_000068: ncbigene

position:29286:-1
position: 29286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32342:-1
position: 32342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29286-32342:-1:exon

HDEF_RS10670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10670
old locus tag: HDEF_p0027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873479.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MIEKILTQIESALAAVSRYTLGKDFTAYCDLRTVIGLTEEDKMLRPALQAPYIFVTHTGDYASVFEIQGAFCEFDEKDTFNERVQKEDPESFRDYIARLHTALASDFKSWGHKLSFVFERDPHKAREELTQLMAPQCRAIRRCGLALEDILQEKIEHSVPFMARERAFMVVYTGRTVLPASELKEEQQRLQTRLNGAPVARFGQDPEHLRLEGLKIRHDALLSKIEQDFSTDGQGVLLRLMEAHEVGFHIREETDRHGTSRDWQPLLPGDLLFPHGRPKGDDHSTMVPPYLNFQLFSQEVNTHGALVEIDGLWHSSLALTLGPQKPETFTQLFHKIHRKVPFRIRWDLMPCGHDVLGKXRTALEFLSVIPSLRPLYDSVQWLAKNNERDPTCVMTITASTWADDPQGVKRNLTMLQKAVQSWGVCEVTRTFGDPLRAWTSTILAASSAGGVHLLFPPLSAALAMMPLNRPATPWPNEASVVFQTIDGKPFPVRLGSALQEKCTEMVTGEPGSGKSVLLNVLNEVVISHGQSQLPFLSIIDKGYSAQGLIRLIRDALPPERRNEVIGIVLQNDDQQCRNPFDIQLGARFPLTTERSWLIQLCTALCTDPTTGHPPNAKDTQQILSRVIDEVYRNNAEKNPIRYAPTLVPEVDTALSEIDSPEEWESFSWYEVRDRLFETGHIKEATLAQYQAVPELTDLQSALNHEDVRHAFGDIHRDGSQEKLLKTLSRCLTQASTEYRLLAGRTKFSLDPNTRVIALDLNNVMGDNTNEGQLRTGILYLFAGQVAGGEYSLPQHREELLAKIDPRYRNFHLARLEQLDQEMKTKVYDELHNARKVPFIFSALETQDREQRKFGIRTLLSSQYLSDFPPDLLKSANSLYLMRVRPEDAKILTEHFQVPAATLRRFMSLSKGAAPDGSGTCFLAVFRTKIGRIVHILKNTVGPRELWALNSTPKDSALRNRLYEQLDGRTARNILAEHFPTGSAEKIIEHRQKQAGEQESTNIIRQLADELMSSRGSRW
SIO_010081: HDEF_RS10670
subclass of: SO_0000673
so part of: HDEF_RS10670
location: complement(29286..32342)
location: region:29286-32342:-1
so has part: feature:29286-32342:-1:exon

WP_044612611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29286-32342:-1:exon

HDEF_RS10675
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10675
old locus tag: HDEF_p0026
so part of: sequence
location: 32410..32688
location: region:32410-32688:1
so has part: feature:32410-32688:1:exon
subclass of: SO_0000010

66261861
type: Gene
SIO_000068: ncbigene

position:32410:1
position: 32410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32688:1
position: 32688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32410-32688:1:exon

HDEF_RS10675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10675
old locus tag: HDEF_p0026
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012755126.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MIISFRHKGLETFYRTGSTRGIQAKHAVKLNRLLASLDAASLPKELSYPGYKLHSLQGTLKGYWSVWVSGHWRLTFRFVHGDVELIDYLDYH
SIO_010081: HDEF_RS10675
subclass of: SO_0000673
so part of: HDEF_RS10675
location: 32410..32688
location: region:32410-32688:1
so has part: feature:32410-32688:1:exon

WP_044612616.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32410-32688:1:exon

HDEF_RS10680
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10680
old locus tag: HDEF_p0028
so part of: sequence
location: 32703..32990
location: region:32703-32990:1
so has part: feature:32703-32990:1:exon
subclass of: SO_0000010

66261862
type: Gene
SIO_000068: ncbigene

position:32703:1
position: 32703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32990:1
position: 32990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32703-32990:1:exon

HDEF_RS10680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10680
old locus tag: HDEF_p0028
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009622956.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HigA family addiction module antitoxin
translation: MMKNHPHPGEILREDVLLPLGIEVTEAAKRLGIARTTLSRVIHGHAGISPDLAIRLELAGVGTARFWMTLQTNFELSQSRTRIQPKVIPLQSNVA
SIO_010081: HDEF_RS10680
subclass of: SO_0000673
so part of: HDEF_RS10680
location: 32703..32990
location: region:32703-32990:1
so has part: feature:32703-32990:1:exon

WP_015873077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32703-32990:1:exon

HDEF_RS11060
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS11060
old locus tag: HDEF_p0029
so part of: sequence
location: complement(33028..33630)
location: region:33028-33630:-1
so has part: feature:33028-33630:-1:exon
subclass of: SO_0000010

66261911
type: Gene
SIO_000068: ncbigene

position:33028:-1
position: 33028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33630:-1
position: 33630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33028-33630:-1:exon

HDEF_RS11060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS11060
old locus tag: HDEF_p0029
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873078.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLVFSILSPKDGPPSQKXNTDKNSEAPCFFXGYLSKNNRRQEGESHPLNHDKDPLRWVDPLCEAWQNLDSLKVDEGFVAYLPEMKPEDVNHLQRAAFFALQSPDPVYREAGKSVMNWLAEHKKEVEACWGTSQPKAFAQALQQASEEQRAQYQHRWRHLALILPPKKFIGKGFFAEQGIESDTRQWAEIYQGFLSHDRLQ
SIO_010081: HDEF_RS11060
subclass of: SO_0000673
so part of: HDEF_RS11060
location: complement(33028..33630)
location: region:33028-33630:-1
so has part: feature:33028-33630:-1:exon

WP_015873078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33028-33630:-1:exon

HDEF_RS10690
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10690
old locus tag: HDEF_p0030
so part of: sequence
location: complement(33660..34055)
location: region:33660-34055:-1
so has part: feature:33660-34055:-1:exon
subclass of: SO_0000010

66261863
type: Gene
SIO_000068: ncbigene

position:33660:-1
position: 33660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34055:-1
position: 34055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33660-34055:-1:exon

HDEF_RS10690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10690
old locus tag: HDEF_p0030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873079.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRSFHDKILFFYVHLSLWANRLRQKTGQVLIALLSLCVTQSASADEDIAGMVNHITQGIASVQSGLMKAAQVAGVGCVLAGIFLWLRKKXDPHIKGSSIAILIGIGCILIALDQFISRGQKQAGLRPVNLS
SIO_010081: HDEF_RS10690
subclass of: SO_0000673
so part of: HDEF_RS10690
location: complement(33660..34055)
location: region:33660-34055:-1
so has part: feature:33660-34055:-1:exon

WP_015873079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33660-34055:-1:exon

HDEF_RS10695
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: traQ
locus tag: HDEF_RS10695
old locus tag: HDEF_p0031
so part of: sequence
location: complement(34103..34642)
location: region:34103-34642:-1
so has part: feature:34103-34642:-1:exon
subclass of: SO_0000010

66261864
type: Gene
SIO_000068: ncbigene

position:34103:-1
position: 34103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34642:-1
position: 34642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34103-34642:-1:exon

HDEF_RS10695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: traQ
locus tag: HDEF_RS10695
old locus tag: HDEF_p0031
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873080.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraQ
translation: MNTDLIQMLGHLANTLTKSGINLVMSLSVVMGIFSATVYCVRLARPKTHRQGGGFSLGKGVLFLMMCGGLISLRQIMNASSHQLGFGDVTFDAIAYVSPSRYGPAAEALNAVLTLLRLLGVIFFYQGIRRMKRSLIDGHTGLSAGEDVSHGVVKVLIGTLLICNPYFLTALKNTLNIVW
SIO_010081: HDEF_RS10695
subclass of: SO_0000673
so part of: HDEF_RS10695
location: complement(34103..34642)
location: region:34103-34642:-1
so has part: feature:34103-34642:-1:exon

WP_015873080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34103-34642:-1:exon

HDEF_RS11065
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: traP
locus tag: HDEF_RS11065
old locus tag: HDEF_p0032
so part of: sequence
location: complement(34656..35477)
location: region:34656-35477:-1
so has part: feature:34656-35477:-1:exon
subclass of: SO_0000010

66261912
type: Gene
SIO_000068: ncbigene

position:34656:-1
position: 34656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35477:-1
position: 35477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34656-35477:-1:exon

HDEF_RS11065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: traP
locus tag: HDEF_RS11065
old locus tag: HDEF_p0032
inference: COORDINATES: protein motif:HMM:NF033885.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraP
translation: MKKIIFVSNQKERNDLSIKGKNTMNETKDRFDFDERGSDHHEASNLSTEPTPPPEFPSKKKIFWGLGSKELGMFACFTVLGGAFIFWPSPSEQTGFARFASSPSVYEPSAFFKKDSEEKAIPSWNVNTQNHAALSEAFTRFQQEMALILEARRLFAEENREAIGALSARLDAKNQEIKQLKQQLGDMAIRFESQQTQKHLPDKKRAPKPDQKRPRPSSGTTGYRLHSLSQGMAWIAYQGSTYAVREGDTLGKIKIHQIDTAKRQIDTSAGVIQ
SIO_010081: HDEF_RS11065
subclass of: SO_0000673
so part of: HDEF_RS11065
location: complement(34656..35477)
location: region:34656-35477:-1
so has part: feature:34656-35477:-1:exon

WP_048901594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34656-35477:-1:exon

HDEF_RS11180
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: traO
locus tag: HDEF_RS11180
old locus tag: HDEF_p0033
so part of: sequence
location: complement(35434..36606)
location: region:35434-36606:-1
so has part: feature:35434-36606:-1:exon
subclass of: SO_0000010

66261918
type: Gene
SIO_000068: ncbigene

position:35434:-1
position: 35434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36606:-1
position: 36606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35434-36606:-1:exon

HDEF_RS11180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: traO
locus tag: HDEF_RS11180
old locus tag: HDEF_p0033
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873477.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraO
translation: MKIEQELAREAGKSLILLMICIVVLAVLIYLILQWTDTPIETKSIVQIDSVASQTGRPTKESAEYRALLEKYNRTESEKAREEGQSFVARIREGTEENQKPSPASLPDENRYAPPPVTEQEKGSAFTETGANEHRRKAIDTLLQELNAQWQPVAFQLAPLIEGGEAVSEGTWTDSVAQQSTAPLPLTGNDITEKAIVAPYTRVPAVIETAVDSDNPDSQVLAKIPTGAYAGAQLQAKRVQLVGDGLSIHFERMSWRGQTYAVEAYALDEKTLQSSVASTVNHRYFSRIILPAVAMGMGRAGQLFEQANTQNTITPQGTVIQTRASNPDGRAIAGTIVGGIGQQAAQVMTHDAARLPIQQVTLHRGQIIAIQFMGGVYEKDNLRLKSERAK
SIO_010081: HDEF_RS11180
subclass of: SO_0000673
so part of: HDEF_RS11180
location: complement(35434..36606)
location: region:35434-36606:-1
so has part: feature:35434-36606:-1:exon

WP_015873082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35434-36606:-1:exon

HDEF_RS10710
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10710
old locus tag: HDEF_p0034
so part of: sequence
location: complement(36610..37572)
location: region:36610-37572:-1
so has part: feature:36610-37572:-1:exon
subclass of: SO_0000010

66261865
type: Gene
SIO_000068: ncbigene

position:36610:-1
position: 36610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37572:-1
position: 37572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36610-37572:-1:exon

HDEF_RS10710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10710
old locus tag: HDEF_p0034
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873476.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DotH/IcmK family type IV secretion protein
translation: MTLRLLFLVLSVVLTDARASDKPRQWTPAHSASSTTEEPSRSERKNNQNSKKNKPLPLPSDALSYAQEQALPLSGPEIEALSRGADEVRRGRAYQPRTIVPRISTLTVNLSPGASIPILRTAANQTSSLTFSDSTGAPWTLGAPPLNSNHKGFQVSYIPSSALIAVQALRRYDTGNITVYLEGLHVPVVIHLTSGSPQSRAQTQIMDSRLDLRIPQRGPNAKPSAPPDSQIALYNNLLQAFLDGVPPLDAKPLRTRGQVPSTTVWQWGEHLYIRTQSDIRDEFEQTLSSLDGTHLWKLPLTPTVHFSVMGKTEPLIIELE
SIO_010081: HDEF_RS10710
subclass of: SO_0000673
so part of: HDEF_RS10710
location: complement(36610..37572)
location: region:36610-37572:-1
so has part: feature:36610-37572:-1:exon

WP_238526191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36610-37572:-1:exon

HDEF_RS10715
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10715
old locus tag: HDEF_p0035
so part of: sequence
location: complement(37611..38282)
location: region:37611-38282:-1
so has part: feature:37611-38282:-1:exon
subclass of: SO_0000010

66261866
type: Gene
SIO_000068: ncbigene

position:37611:-1
position: 37611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38282:-1
position: 38282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37611-38282:-1:exon

HDEF_RS10715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10715
old locus tag: HDEF_p0035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873475.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DotI/IcmL/TraM family protein
translation: MKKNSDLGDNKDNAPYKAALELHHQNQLGAQFARTTLTLCLTTSLCLIVSLLLNGYLGWTVAHPPVKYFATQEGRVIPLIPTHQPVLTVSQVSDFGAHTIREAFTMDFVHFKEQMSRVSAYFSEEGFKSYYQALTQSNVLAAVRDKKMNLAVMLAPGVVRQKGPLSNGVYAWEIQYPVTLKLSGQTLSLPEQRFIFSLFLQRADLREKPNGLEVTQLVTFDAK
SIO_010081: HDEF_RS10715
subclass of: SO_0000673
so part of: HDEF_RS10715
location: complement(37611..38282)
location: region:37611-38282:-1
so has part: feature:37611-38282:-1:exon

WP_015873084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37611-38282:-1:exon

HDEF_RS10720
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10720
old locus tag: HDEF_p0036
so part of: sequence
location: complement(38307..38696)
location: region:38307-38696:-1
so has part: feature:38307-38696:-1:exon
subclass of: SO_0000010

66261867
type: Gene
SIO_000068: ncbigene

position:38307:-1
position: 38307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38696:-1
position: 38696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38307-38696:-1:exon

HDEF_RS10720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10720
old locus tag: HDEF_p0036
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873474.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISLFTQAEPCRAHQAAQIGSQMGYEQAKKAADAWEKREQYATTALQQCLGSLSTSLTVPTFPDLSSLLNGIKDKVCAAGREKISRVIPSHINPWEEWTVADYSIPKKTVSASQMMVPEPKKGSPFTLN
SIO_010081: HDEF_RS10720
subclass of: SO_0000673
so part of: HDEF_RS10720
location: complement(38307..38696)
location: region:38307-38696:-1
so has part: feature:38307-38696:-1:exon

WP_015873085.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38307-38696:-1:exon

HDEF_RS10725
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10725
old locus tag: HDEF_p0037
so part of: sequence
location: complement(38749..41538)
location: region:38749-41538:-1
so has part: feature:38749-41538:-1:exon
subclass of: SO_0000010

66261868
type: Gene
SIO_000068: ncbigene

position:38749:-1
position: 38749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41538:-1
position: 41538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38749-41538:-1:exon

HDEF_RS10725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10725
old locus tag: HDEF_p0037
inference: COORDINATES: protein motif:HMM:NF024755.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPD7 domain-containing protein
translation: MMATEKTWLVIPYDELSLAKEAAKKLPQGENALGFDKDLKLWFAKPGANLSALQRWLPDPMSQAPTKRDPRDEFAQVLIEAGFELDGPPEMDGQLHRVKTSEDKSGQKTGAYTGYLDGTPAGWYQNHRLHSDPIKWKSSLSSSSVHKPAQHHLRALAAQKKQTREAEQARKHQHHAFRVRQLFALLPQAEASHPYLRRKGIPLTQGIKQDRQDRQGRLVIPLRNAEGDIRTIQRIDKTGFKSLKKGAQKTGGFFVVGGTVKAGQPLLYAEGYATAASIAQATGLPVVMTVDAGNMPKVAQSLAQRYPDHAHFFLADDDRKNATNKGVQKAQEAAELTQGTVIVPVFTEAEIKQNLTDFNDVQQSQGIKAVTSQIAPYLESEVKKSAPQVNPAPPVENNESVVRPTSQTPIQNEQAPQVERQVERPDKKEPSHVENRIEIEPILSEKAEKGPQVTPINIDTLMQNITHRYENGTVVYFHQGERAFVDHGQQITMASPQASQNNTMVLAALWVAKQHYHGKIEFTGSDAFKQKAIDLIAEHRLEVVLKNSQQQHQLERAMQRLHQDKEAKSTEPAQTEALVANRETVTPKKTSSTAPPEPSMEVPLIGKLLEHRAAPYQFKAEKGMSYFVRMRTKEGEKVIWGKELEGALNDSGMKTGELITLRCLGKKPLTLNIPIKDAQGNLVRWEKKEGHRTQWEIASAIDPRLLVADEKDAFLPSALMAYDRATFNKIQQAVLTKTGMTVPLPSHQSDGLWVQPDGKGTTKTGHPDRGVLPTTHPDSGKTVMTAHSPEGKMRLHLVQGQGDSVQGMVWHQGAYRHALGVLCQKASGAPYLRLNVVDEGGVRPMGYGHALNQGDGLSKTNRFVFRLEGEKDPVIAQMEKPEKKTVEFNKKWGFKAPYPPMTKSPEENNLLRVKETPKPDQQDPPSPAP
SIO_010081: HDEF_RS10725
subclass of: SO_0000673
so part of: HDEF_RS10725
location: complement(38749..41538)
location: region:38749-41538:-1
so has part: feature:38749-41538:-1:exon

WP_015873086.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38749-41538:-1:exon

HDEF_RS10730
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: icmT
locus tag: HDEF_RS10730
old locus tag: HDEF_p0038
so part of: sequence
location: complement(41553..41813)
location: region:41553-41813:-1
so has part: feature:41553-41813:-1:exon
subclass of: SO_0000010

66261869
type: Gene
SIO_000068: ncbigene

position:41553:-1
position: 41553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41813:-1
position: 41813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41553-41813:-1:exon

HDEF_RS10730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: icmT
locus tag: HDEF_RS10730
old locus tag: HDEF_p0038
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873087.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IcmT/TraK family protein
translation: MTLSPWRDASRPLTILGIPALLLPIYFAWFRWPTLLTLAICTALILFFKGLSLFGVTLTVLTQRGLHLMRGNPVLGRPWWIRKFVE
SIO_010081: HDEF_RS10730
subclass of: SO_0000673
so part of: HDEF_RS10730
location: complement(41553..41813)
location: region:41553-41813:-1
so has part: feature:41553-41813:-1:exon

WP_015873087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41553-41813:-1:exon

HDEF_RS10735
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: traJ
locus tag: HDEF_RS10735
old locus tag: HDEF_p0039
so part of: sequence
location: complement(41875..43041)
location: region:41875-43041:-1
so has part: feature:41875-43041:-1:exon
subclass of: SO_0000010

66261870
type: Gene
SIO_000068: ncbigene

position:41875:-1
position: 41875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43041:-1
position: 43041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41875-43041:-1:exon

HDEF_RS10735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: traJ
locus tag: HDEF_RS10735
old locus tag: HDEF_p0039
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857590.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid transfer ATPase TraJ
translation: MTENSLPPFDFSAGLTADTLRRFFAWCASHQVTDIHLQGGAPMMVGRYGRLIKASAFRLEEAQLTKLIDEIFTPEIKAMVKSGQGVDRALQLEGDANGRYGLPRGERLRFRANFIQATAGRQELTMAVTLRLIPSQIPTLESLAIEPELFKNLLPHKGLIWVCGETGSGKSTLLAAIYQYCGRVYPDRKIVTFEDPIEYILGTPENRLPPTQSQIGRDVSSFSEGLRLALRQAPDVIGVGEIRDGETLMGAIACGQSGHLCLSTLHTHSPAETIPRAVLMFPPDRREAVAHDLLGILQVIVVQQLLRTTDGQRQAIREYLIFDDAVRQALSELNYTQWSAWINRRLKTQKARLADKAWQLYQEDRIADEELLTVMSHSEREGRKKNTL
SIO_010081: HDEF_RS10735
subclass of: SO_0000673
so part of: HDEF_RS10735
location: complement(41875..43041)
location: region:41875-43041:-1
so has part: feature:41875-43041:-1:exon

WP_015873088.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41875-43041:-1:exon

HDEF_RS10740
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10740
old locus tag: HDEF_p0041
so part of: sequence
location: complement(43028..43834)
location: region:43028-43834:-1
so has part: feature:43028-43834:-1:exon
subclass of: SO_0000010

66261871
type: Gene
SIO_000068: ncbigene

position:43028:-1
position: 43028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43834:-1
position: 43834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43028-43834:-1:exon

HDEF_RS10740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10740
old locus tag: HDEF_p0041
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873827.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system DotC family protein
translation: MKKSGLMLWLLILTGSAWAQEPEKKPPPDITAYLNPSHPHKGMSETVHQMLTEAGHTLGFRGGKAQRAWELQGALRHKENILSTLYDFRTLISPQGWLPPVIVSSQDIAHITDDQIRSASRIYHILSPERFVSHPPCWRPYLMAGLSTTTALPDNAVRPKNGEQRTVWRKAIEKGWSEGRESADRILEANFHRLTRDYTGMLQYSTLLQQGMVTPPRVTEQQQTVVGTPDQLILGDKIKRLKQRAQFNIDHLDWQPIITTEKKSNDGK
SIO_010081: HDEF_RS10740
subclass of: SO_0000673
so part of: HDEF_RS10740
location: complement(43028..43834)
location: region:43028-43834:-1
so has part: feature:43028-43834:-1:exon

WP_015873090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43028-43834:-1:exon

HDEF_RS10745
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10745
old locus tag: HDEF_p0040
so part of: sequence
location: complement(43831..44274)
location: region:43831-44274:-1
so has part: feature:43831-44274:-1:exon
subclass of: SO_0000010

66261872
type: Gene
SIO_000068: ncbigene

position:43831:-1
position: 43831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44274:-1
position: 44274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43831-44274:-1:exon

HDEF_RS10745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10745
old locus tag: HDEF_p0040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873828.1
note: Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DotD/TraH family lipoprotein
translation: MKKNIAFLTGLLLSGCQMPKTGKPANPAFEKAARSISMKQVNLHQSGALHQKRSQFAQPILSEDNRVNLDWQGDALTLLAQLARQRGLTFACSGHRLPLPVNVSVQEMRFDALLRQIETQISCRATLKRHPHSLHLFFSLPEKAGHR
SIO_010081: HDEF_RS10745
subclass of: SO_0000673
so part of: HDEF_RS10745
location: complement(43831..44274)
location: region:43831-44274:-1
so has part: feature:43831-44274:-1:exon

WP_015873089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43831-44274:-1:exon

HDEF_RS10750
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10750
old locus tag: HDEF_p0042
so part of: sequence
location: complement(44342..44806)
location: region:44342-44806:-1
so has part: feature:44342-44806:-1:exon
subclass of: SO_0000010

66261873
type: Gene
SIO_000068: ncbigene

position:44342:-1
position: 44342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44806:-1
position: 44806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44342-44806:-1:exon

HDEF_RS10750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10750
old locus tag: HDEF_p0042
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873829.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MKKTGLLFLLLTLSGPAAALCFQAAGLRYQLDPLLLKAMAIQESGLNPRAINHNKNKAGKVLSTDFGLMQINSLHIPTLKTLGVIRSKEDLLSNACLNVQTGAWILARHLNICGHHWSCLGSYNAGFAKNNQHRRIKYARQVYRRYQQLRSQRP
SIO_010081: HDEF_RS10750
subclass of: SO_0000673
so part of: HDEF_RS10750
location: complement(44342..44806)
location: region:44342-44806:-1
so has part: feature:44342-44806:-1:exon

WP_015873091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44342-44806:-1:exon

HDEF_RS10755
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10755
old locus tag: HDEF_p0043
so part of: sequence
location: complement(44849..45469)
location: region:44849-45469:-1
so has part: feature:44849-45469:-1:exon
subclass of: SO_0000010

66261874
type: Gene
SIO_000068: ncbigene

position:44849:-1
position: 44849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45469:-1
position: 45469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44849-45469:-1:exon

HDEF_RS10755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10755
old locus tag: HDEF_p0043
EC number: 3.4.23.43
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873830.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: prepilin peptidase
translation: MMLLFLLSSLSALVMAVSLPNIIVRVEKNVISQCDDLKPSRETTPPMYPLAAVALFNIAPVFYWFNPEQGYLSGGLFLLSVSSYIDIVRRWVPDSVIFLFSGVSVYGVASGTIGPSPEEAFMATGLFVFPFIVINGFSWLKKKIWVFASGDIYIVLSIGLWLDKTTAVMVAGLSILLALLYGSVFRQPHFPFIPFLLFSFLMNGFI
SIO_010081: HDEF_RS10755
subclass of: SO_0000673
so part of: HDEF_RS10755
location: complement(44849..45469)
location: region:44849-45469:-1
so has part: feature:44849-45469:-1:exon

WP_015873467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44849-45469:-1:exon

HDEF_RS10760
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: pilM
locus tag: HDEF_RS10760
old locus tag: HDEF_p0044
so part of: sequence
location: complement(45472..45903)
location: region:45472-45903:-1
so has part: feature:45472-45903:-1:exon
subclass of: SO_0000010

66261875
type: Gene
SIO_000068: ncbigene

position:45472:-1
position: 45472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45903:-1
position: 45903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45472-45903:-1:exon

HDEF_RS10760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: pilM
locus tag: HDEF_RS10760
old locus tag: HDEF_p0044
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873831.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV pilus biogenesis protein PilM
translation: MLNLNRVLVVFFIFLSTHLFNTLKGKDAEVTSQVTDSLFTTTFLLYADRLSTFKKNHPAYTGTVNADGLLPPWLGKKPEIRMHIENGIGYVDMPNQAGLYAGLMSATDHSSLMGVTDEHHLITLSGQIPKPPFIPENHLVYMR
SIO_010081: HDEF_RS10760
subclass of: SO_0000673
so part of: HDEF_RS10760
location: complement(45472..45903)
location: region:45472-45903:-1
so has part: feature:45472-45903:-1:exon

WP_015873093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45472-45903:-1:exon

HDEF_RS10765
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: pilV
locus tag: HDEF_RS10765
old locus tag: HDEF_p0045
so part of: sequence
location: complement(45953..47317)
location: region:45953-47317:-1
so has part: feature:45953-47317:-1:exon
subclass of: SO_0000010

66261876
type: Gene
SIO_000068: ncbigene

position:45953:-1
position: 45953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47317:-1
position: 47317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45953-47317:-1:exon

HDEF_RS10765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: pilV
locus tag: HDEF_RS10765
old locus tag: HDEF_p0045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873832.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: shufflon system plasmid conjugative transfer pilus tip adhesin PilV
translation: MTSLKKGIWQISDASIGLGVGLFCFALIVVPLVYEFNKDQQYSTAASHALRVEKATQKYMMDNALRIGSRATATSPYILGVPELIQAGYLPAGFSETNLFSQRYHTRIVQPAPLKFHHMIFLTGGAPLSLSAARKMAMRIGGSGGYIEGGLAKGVMGGWTESLSAFGGYHPGEGHVVIAGFFSQGSGKNDYLYRHAVPGQSELNTMKTALDMDKNDINAVNTVNANKVKTNTLHATGSAHIEGALRSGDDITTDGWLITQGDKGWYSEKGKGGWHMTDETWIKAYKGKSIYTTGTVRGGYVKLDEISDAEEKCNEDGLLSRDASGAILSCQSGVWKGAGGGNLSRAGVNALSVKSTGDFHFVLVSISSRFFAVDGSHTARANFTLSLNGRVREQITNGLNVRKTGGGGHYWGYDTVGVVQKQYRLKIAQGDHLRVALSSAHYHLSSDIRIDLSN
SIO_010081: HDEF_RS10765
subclass of: SO_0000673
so part of: HDEF_RS10765
location: complement(45953..47317)
location: region:45953-47317:-1
so has part: feature:45953-47317:-1:exon

WP_015873094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45953-47317:-1:exon

HDEF_RS10770
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10770
old locus tag: HDEF_p0046
so part of: sequence
location: complement(47458..47967)
location: region:47458-47967:-1
so has part: feature:47458-47967:-1:exon
subclass of: SO_0000010

66261877
type: Gene
SIO_000068: ncbigene

position:47458:-1
position: 47458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47967:-1
position: 47967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47458-47967:-1:exon

HDEF_RS10770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10770
old locus tag: HDEF_p0046
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873833.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 4 pilus major pilin
translation: MNSLKKGIFNISDASIGWGMAFVGLAMVAAAGMGLYVKVYSTSAVSSINTLLNETKSLRSSTGYGTVNLVPALIRSGAIPKGISIVGDTLFNASGGAITVTGKGIGFAISTSAINEKDCMKLATTLGNGDIASIRINSASAMVGEISPAQASAACTVGKNNTVTFTTHM
SIO_010081: HDEF_RS10770
subclass of: SO_0000673
so part of: HDEF_RS10770
location: complement(47458..47967)
location: region:47458-47967:-1
so has part: feature:47458-47967:-1:exon

WP_015873095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47458-47967:-1:exon

HDEF_RS10775
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10775
old locus tag: HDEF_p0047
pseudo: true
so part of: sequence
location: complement(47978..49042)
location: region:47978-49042:-1
so has part: feature:47978-49042:-1:exon
subclass of: SO_0000010

66261878
type: Gene
SIO_000068: ncbigene

position:47978:-1
position: 47978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49042:-1
position: 49042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47978-49042:-1:exon

HDEF_RS10775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10775
old locus tag: HDEF_p0047
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873462.1
note: too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II secretion system F family protein
SIO_010081: HDEF_RS10775
subclass of: SO_0000673
so part of: HDEF_RS10775
location: complement(47978..49042)
location: region:47978-49042:-1
so has part: feature:47978-49042:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:47978-49042:-1:exon

HDEF_RS10780
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10780
old locus tag: HDEF_p0048
so part of: sequence
location: complement(49029..50576)
location: region:49029-50576:-1
so has part: feature:49029-50576:-1:exon
subclass of: SO_0000010

66261879
type: Gene
SIO_000068: ncbigene

position:49029:-1
position: 49029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50576:-1
position: 50576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49029-50576:-1:exon

HDEF_RS10780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10780
old locus tag: HDEF_p0048
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873097.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATPase, T2SS/T4P/T4SS family
translation: MKVIPLSGAHAVPDDRLPEKLNDAICLVKRDDGTLILKVALPFIDCLEVMDYERRLKENNVQFTLMPCALSDIVELKKSAESDVKNEDEHTEQTIQKKIIKILSDAVTQRASDVHIRLEKIVCSVYFRIDGKLAYYEEYAAEEGNRYVNCLYNTMCLHQSHASVSYAEPSDAKVREEYVHSLGLTGGRFASRPTSEGLLSVIRLITRRDRALSLNELGLTAPQEAVLERAISKPTGVIFFTGPMGSGKSTLVQVISELMTARDPGIHLATVENPVESPIKGAVQTALGPKEEWWQAVKSLMRLDINCIVIGEVRDHLSATAAIEVAQTGHYVLTTLHTTHPVDTIARLKSLQVENDLISDAALITCLVGQRLAPKLCPHCKKPYLEHKNDLLPVFQDLIEQCCQPEQVYLKNASGCEHCEGKGVKGRVGIFEVIEVDAEWMRRYHERGKTHAYDYWYQKGGQTLCDNTLRLINEGRIDPVMAHKEVCNLDRDFLVFTEDIREKAQHHRRASNESL
SIO_010081: HDEF_RS10780
subclass of: SO_0000673
so part of: HDEF_RS10780
location: complement(49029..50576)
location: region:49029-50576:-1
so has part: feature:49029-50576:-1:exon

WP_015873097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49029-50576:-1:exon

HDEF_RS10785
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: pilP
locus tag: HDEF_RS10785
old locus tag: HDEF_p0049
so part of: sequence
location: complement(50573..50983)
location: region:50573-50983:-1
so has part: feature:50573-50983:-1:exon
subclass of: SO_0000010

66261880
type: Gene
SIO_000068: ncbigene

position:50573:-1
position: 50573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50983:-1
position: 50983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50573-50983:-1:exon

HDEF_RS10785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: pilP
locus tag: HDEF_RS10785
old locus tag: HDEF_p0049
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873098.1
GO process: GO:0009297 - pilus assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV pilus biogenesis protein PilP
translation: MESHKVFLFLLLLFPSLLSATSDINTVGELDALQSQITWYKALSARNKAKDEVGLTGSLDRSPTISIKPDPIPRITKMIGHGKSLYVRLRFPDGTEMTRKKGDAIPGGFTLTQVSLDEVTITHFSGNKMMLSEATP
SIO_010081: HDEF_RS10785
subclass of: SO_0000673
so part of: HDEF_RS10785
location: complement(50573..50983)
location: region:50573-50983:-1
so has part: feature:50573-50983:-1:exon

WP_015873098.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50573-50983:-1:exon

HDEF_RS10790
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
gene: pilO2
locus tag: HDEF_RS10790
old locus tag: HDEF_p0050
so part of: sequence
location: complement(50970..52280)
location: region:50970-52280:-1
so has part: feature:50970-52280:-1:exon
subclass of: SO_0000010

66261881
type: Gene
SIO_000068: ncbigene

position:50970:-1
position: 50970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52280:-1
position: 52280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50970-52280:-1:exon

HDEF_RS10790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
gene: pilO2
locus tag: HDEF_RS10790
old locus tag: HDEF_p0050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873836.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 4b pilus protein PilO2
translation: MSHEKKPIHIVTYNKKSFVVGLEWRAIKGGLHFMKEVKAIGKREHLDVVAIRQNGSIQAGFAPKFSVPLKGKYSLAVSLVSLISGKWLAVIPVESMEDNFIVIASTGGLVMPWTDKIVHAEALEQEVVDMTARLSQGEGEVKVFGDKRFLWVTDERDWSEVLAVKNLKKEFKLKPLTWGLTQKESVSWASFFIFILSAFYFFNQYWNHKEHKARLLAIEKQKLADDINKEARYKAALLSLKPPWVDKPSIQNFIQRCDQTLQQIPLSLGGWITAQITCFHDKAELLFARLEGSAVGAMDFKWSVEKRYSVTPSFNGKQTGAAVFFLPIHAIPEGDDPLLPLSHQRDKLMTLLQRHNLRFTLTEVPFEEKKTDEQGIDFPLPNWREMTFSYESSIPPRMIFKESELPGMRIKKIALLINQDNAAIQYQVQGVMYGKP
SIO_010081: HDEF_RS10790
subclass of: SO_0000673
so part of: HDEF_RS10790
location: complement(50970..52280)
location: region:50970-52280:-1
so has part: feature:50970-52280:-1:exon

WP_148207026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50970-52280:-1:exon

HDEF_RS10795
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10795
old locus tag: HDEF_p0051
so part of: sequence
location: 52349..52627
location: region:52349-52627:1
so has part: feature:52349-52627:1:exon
subclass of: SO_0000010

66261882
type: Gene
SIO_000068: ncbigene

position:52349:1
position: 52349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52627:1
position: 52627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52349-52627:1:exon

HDEF_RS10795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10795
old locus tag: HDEF_p0051
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020483566.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnT family toxin
translation: MRIEYDAVKNHRNILERGLSFDSVKDFDFSTAFFFIDERKNYPEVRYLAVGYLKNRLHVLCFSDIKNGIRVISFRKANTREGIKYEKSLTLD
SIO_010081: HDEF_RS10795
subclass of: SO_0000673
so part of: HDEF_RS10795
location: 52349..52627
location: region:52349-52627:1
so has part: feature:52349-52627:1:exon

WP_015873100.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52349-52627:1:exon

HDEF_RS10800
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10800
old locus tag: HDEF_p0052
so part of: sequence
location: 52602..52889
location: region:52602-52889:1
so has part: feature:52602-52889:1:exon
subclass of: SO_0000010

66261883
type: Gene
SIO_000068: ncbigene

position:52602:1
position: 52602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52889:1
position: 52889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52602-52889:1:exon

HDEF_RS10800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10800
old locus tag: HDEF_p0052
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873458.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnA antitoxin family protein
translation: MKNHLPLIDKEGEVRELKEEDFALMRPAEEVLPLSLLKTLGIRGPQKAPTKQKITIRLSQEVVDAFRATGKHWQSRMDCAMKNWLKEHSPHDVKP
SIO_010081: HDEF_RS10800
subclass of: SO_0000673
so part of: HDEF_RS10800
location: 52602..52889
location: region:52602-52889:1
so has part: feature:52602-52889:1:exon

WP_015873101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52602-52889:1:exon

HDEF_RS10805
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10805
old locus tag: HDEF_p0053
so part of: sequence
location: complement(52899..54581)
location: region:52899-54581:-1
so has part: feature:52899-54581:-1:exon
subclass of: SO_0000010

66261884
type: Gene
SIO_000068: ncbigene

position:52899:-1
position: 52899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54581:-1
position: 54581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52899-54581:-1:exon

HDEF_RS10805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10805
old locus tag: HDEF_p0053
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011988414.1
GO component: GO:0019867 - outer membrane [Evidence IEA]
GO process: GO:0009297 - pilus assembly [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PilN family type IVB pilus formation outer membrane protein
translation: MNRPFWVVCLSIALFLSGCAVHRRIDNVMEAAQTDSDKVSALLKDASTARPVATFYQEQWINPVPIKSVTKAIPEKMRRCHMTYKTSQPQTIYQFAQDVTQQCGFRVKISPDAAALLSRGASHLGGKGQTQQRDRGPSPIPPMDNDGMMPLPSMDIQTSRLNSATASMNNTITDVAYSGNVAGLLDMVTARLGISWRCHHEEITLFYLETRRFNIDPTNAKYSLKNHQKSGLSTQSSTGGGGSSSGSSTSQQTEMANDLYGDIQKTAESMLTPGGGRLSLNQTSGVVVVTDVPEVVNRIGEYLRDENIKLSKQVLLKVVVYTVHTETADQSGIDWNVIFKSLSGKYGIHVANAFNAGSNLANGGFEILPTATGRASQWAGSQFLLKALSEQVKVSDVKTLSIMTTNLATAGMQIGKQTTYLRKTSVTTGNTTTGAEPVQSLEPGEITTGTNINIMPKILEGNDKMMLTMMMDISSLNRLRRIENRNKTESIEAPDTDSRSIPQRVWLKPGETVLMSGFEQNIQDGSQRGVGSSRHFLFGGGMSGKSKKESFVITITPLLR
SIO_010081: HDEF_RS10805
subclass of: SO_0000673
so part of: HDEF_RS10805
location: complement(52899..54581)
location: region:52899-54581:-1
so has part: feature:52899-54581:-1:exon

WP_015873102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52899-54581:-1:exon

HDEF_RS10810
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10810
old locus tag: HDEF_p0054
so part of: sequence
location: complement(54578..55174)
location: region:54578-55174:-1
so has part: feature:54578-55174:-1:exon
subclass of: SO_0000010

66261885
type: Gene
SIO_000068: ncbigene

position:54578:-1
position: 54578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55174:-1
position: 55174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54578-55174:-1:exon

HDEF_RS10810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10810
old locus tag: HDEF_p0054
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016858107.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toxin co-regulated pilus biosynthesis Q family protein
translation: MKLILILFFLLCLAGCSGSRSHHENTAPVTLIESQIHLHSKKIALAQQRLQQASGIRDFAPGNQVKPDRNPHKKKGPAAQGGLFNKTVKLTVQKRDSMPKTPIQTEKNWRAQKGSTLKETLYLWVEQEQCLPEKKRTWSLIWDTDTNYRIDAPLSFSGTFRDALNGIFRLYAKATVPLFAGINTTQCLLKVDDQERHS
SIO_010081: HDEF_RS10810
subclass of: SO_0000673
so part of: HDEF_RS10810
location: complement(54578..55174)
location: region:54578-55174:-1
so has part: feature:54578-55174:-1:exon

WP_148207027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54578-55174:-1:exon

HDEF_RS11075
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS11075
old locus tag: HDEF_p0055
so part of: sequence
location: complement(55539..55988)
location: region:55539-55988:-1
so has part: feature:55539-55988:-1:exon
subclass of: SO_0000010

66261913
type: Gene
SIO_000068: ncbigene

position:55539:-1
position: 55539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55988:-1
position: 55988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55539-55988:-1:exon

HDEF_RS11075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS11075
old locus tag: HDEF_p0055
inference: COORDINATES: protein motif:HMM:NF014417.2
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcription termination/antitermination NusG family protein
translation: MEKKWYLTCHKSGCSNLYKAQQALIQIEVHSLSPSIQTWRQRLDRKNKRAVIEPLFKGYLFTCFDPEKIPTRKIEHCAGISHLVRFANTIVPIREAVMQEIMRFPLCMNDETRTNHKITTSLKESQKEQIKNIVQKKRRTREPPYSWLF
SIO_010081: HDEF_RS11075
subclass of: SO_0000673
so part of: HDEF_RS11075
location: complement(55539..55988)
location: region:55539-55988:-1
so has part: feature:55539-55988:-1:exon

WP_015873104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55539-55988:-1:exon

HDEF_RS10820
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10820
so part of: sequence
location: complement(56141..56365)
location: region:56141-56365:-1
so has part: feature:56141-56365:-1:exon
subclass of: SO_0000010

66261886
type: Gene
SIO_000068: ncbigene

position:56141:-1
position: 56141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56365:-1
position: 56365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56141-56365:-1:exon

HDEF_RS10820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873761.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFNQISRRGKSVYIGAELRDRLDKMVLDVGHYAGRPVTVSEFVRYLIEKSGNDAQKRLKKILGTEKERKQFSTE
SIO_010081: HDEF_RS10820
subclass of: SO_0000673
so part of: HDEF_RS10820
location: complement(56141..56365)
location: region:56141-56365:-1
so has part: feature:56141-56365:-1:exon

WP_015873841.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56141-56365:-1:exon

HDEF_RS11080
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS11080
old locus tag: HDEF_p0056
so part of: sequence
location: complement(56471..56854)
location: region:56471-56854:-1
so has part: feature:56471-56854:-1:exon
subclass of: SO_0000010

66261914
type: Gene
SIO_000068: ncbigene

position:56471:-1
position: 56471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56854:-1
position: 56854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56471-56854:-1:exon

HDEF_RS11080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS11080
old locus tag: HDEF_p0056
inference: COORDINATES: protein motif:HMM:NF012422.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LuxR C-terminal-related transcriptional regulator
translation: MIKSFDIKEIKFYQEIFEELSPAEIKVLSLYCSGLQCNKISLLLNMSLSTVNSHLNNARKKYELNNYSELRALFHFLINNHLINSFFCNCCKLKKLTQLPKIAKQPNCYLYSYQGLVFQPLFYFKKI
SIO_010081: HDEF_RS11080
subclass of: SO_0000673
so part of: HDEF_RS11080
location: complement(56471..56854)
location: region:56471-56854:-1
so has part: feature:56471-56854:-1:exon

WP_015873105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56471-56854:-1:exon

HDEF_RS10830
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10830
old locus tag: HDEF_p0057
so part of: sequence
location: complement(56888..57565)
location: region:56888-57565:-1
so has part: feature:56888-57565:-1:exon
subclass of: SO_0000010

66261887
type: Gene
SIO_000068: ncbigene

position:56888:-1
position: 56888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57565:-1
position: 57565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56888-57565:-1:exon

HDEF_RS10830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10830
old locus tag: HDEF_p0057
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873106.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LuxR C-terminal-related transcriptional regulator
translation: MRKSLIRLCQRSTEPCGVTDEKSIIYANPALRNLLHFPRCVNSEEGADVTPSDAMTVFETQEKQARDQKLPLCILNILPYGSEKKIQPYLFDFFPLFNEKGQCIGTFFYARLFPFFSLLECTXKKLPRTAAVQKPNKIFTEKEWDIVFFLLNRLGSKEIAKILHSSHRTIENRLQIIYENLGVHNSEQLRNFCERKGIDNYIPSKFLPTGSHVISFSSVSQKNQF
SIO_010081: HDEF_RS10830
subclass of: SO_0000673
so part of: HDEF_RS10830
location: complement(56888..57565)
location: region:56888-57565:-1
so has part: feature:56888-57565:-1:exon

WP_015873106.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56888-57565:-1:exon

HDEF_RS13590
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS13590
so part of: sequence
location: complement(57562..57693)
location: region:57562-57693:-1
so has part: feature:57562-57693:-1:exon
subclass of: SO_0000010

78823934
type: Gene
SIO_000068: ncbigene

position:57562:-1
position: 57562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57693:-1
position: 57693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57562-57693:-1:exon

HDEF_RS13590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS13590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKSTFHVLICEARSIHFVMFACVSKNLTLFQRKSLFNLGGLV
SIO_010081: HDEF_RS13590
subclass of: SO_0000673
so part of: HDEF_RS13590
location: complement(57562..57693)
location: region:57562-57693:-1
so has part: feature:57562-57693:-1:exon

WP_274376884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57562-57693:-1:exon

HDEF_RS10835
type: Gene
subclass of: SO_0000704
RO_0002162: 572265
locus tag: HDEF_RS10835
old locus tag: HDEF_p0058
so part of: sequence
location: complement(57778..58308)
location: region:57778-58308:-1
so has part: feature:57778-58308:-1:exon
subclass of: SO_0000010

66261888
type: Gene
SIO_000068: ncbigene

position:57778:-1
position: 57778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58308:-1
position: 58308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57778-58308:-1:exon

HDEF_RS10835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 572265
locus tag: HDEF_RS10835
old locus tag: HDEF_p0058
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKESVDDLKEELLKTRNLLNLTTDKLNDFISEKKRKKNFVLGGYYMMSRESEKNLRALQQECAAASIVFSIIREYMQIGTNSVTISNSALCKILDKSRATITRAVSHLAKNHYVQIIKTGNVNTYVVNEKIAFSGNALQRKAVFSATIVAHECEQEKRWEEVKELKVVPVIYSEN
SIO_010081: HDEF_RS10835
subclass of: SO_0000673
so part of: HDEF_RS10835
location: complement(57778..58308)
location: region:57778-58308:-1
so has part: feature:57778-58308:-1:exon

WP_015873107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57778-58308:-1:exon