Klebsiella oxytoca strain FDAARGOS_500 plasmid unnamed1, complete sequence.
type: Entry
definition: Klebsiella oxytoca strain FDAARGOS_500 plasmid unnamed1, complete sequence.
sequence version: NZ_CP033845.1
sequence date: 2022-12-01
sequence: sequence
division: CON
label: NZ_CP033845.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10163176
keyword: RefSeq
source: Klebsiella oxytoca
organism: Klebsiella oxytoca
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP033845.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.2, SPAdes v. 3.6.0\nGenome Coverage :: 618.531570169491x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 04:49:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,505\nCDSs (total) :: 5,390\nGenes (coding) :: 5,322\nCDSs (with protein) :: 5,322\nGenes (RNA) :: 115\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 6\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 68\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 35 of 68\nPseudo Genes (incomplete) :: 38 of 68\nPseudo Genes (internal stop) :: 16 of 68\nPseudo Genes (multiple problems) :: 18 of 68\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6078
topology: circular
so has quality: SO_0000988
location: 1..6078
location: region:1-6078:1
RO_0002162: 571

NZ_CP033845
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10163176
type: BioSample
SIO_000068: biosample

1
title: FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
author: Minogue, T.
author: Wolcott, M.
author: Wasieloski, L.
author: Aguilar, W.
author: Moore, D.
author: Jaissle, J.
author: Tallon, L.J.
author: Sadzewicz, L.
author: Zhao, X.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Yan, Y.
author: Sichtig, H.
journal: Unpublished

2
title: Direct Submission
author: Minogue, T.
author: Wolcott, M.
author: Wasieloski, L.
author: Aguilar, W.
author: Moore, D.
author: Jaissle, J.
author: Tallon, L.J.
author: Sadzewicz, L.
author: Zhao, X.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Yan, Y.
author: Sichtig, H.
journal: Submitted (13-NOV-2018) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6078:1
position: 6078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6078:1:source
so part of: sequence
organism: Klebsiella oxytoca
mol type: genomic DNA
strain: FDAARGOS_500
host: Homo sapiens
culture collection: FDA:FDAARGOS_500
plasmid: unnamed1
collected by: USAMRIID < ATCC < AR Prevot < R. Sohier
note: Clinical Isolate

571
type: Taxonomy
SIO_000068: taxonomy

EGY21_RS27995
type: Gene
subclass of: SO_0000704
RO_0002162: 571
locus tag: EGY21_RS27995
old locus tag: EGY21_27960
so part of: sequence
location: complement(join(5723..6078,1..331))
location: region:1-6078:-1
so has part: feature:1-331:-1:exon
so has part: feature:5723-6078:-1:exon
subclass of: SO_0000010

39459692
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6078:-1
position: 6078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-331:-1:exon

position:331:-1
position: 331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5723-6078:-1:exon

position:5723:-1
position: 5723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EGY21_RS27995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 571
locus tag: EGY21_RS27995
old locus tag: EGY21_27960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004986708.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pentapeptide repeat-containing protein
translation: MSKLPRFHNKHIEKRKYSNSLLAKSISSKVRFSNKTFFNVNLRGSRLRSCSFKNIKIVLSDFSGVILNKNRFTNVHFKKCVFYAAIFRDCRFKNCTFEKCIFINTNTESLNHSILDCSKKYNFYEMKIPDDLKDQLTEYRNIPILQKNRLLHLKGGRINTATLFILLSKISKYKLLNGLKKIYIEEQSKVKILSTFKLLEEIKNLVDTNTAFKQNNGALPHPIERLDS
SIO_010081: EGY21_RS27995
subclass of: SO_0000673
so part of: EGY21_RS27995
location: complement(join(5723..6078,1..331))
location: region:1-6078:-1
so has part: feature:1-331:-1:exon
so has part: feature:5723-6078:-1:exon

WP_002011386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-331:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5723-6078:-1:exon

EGY21_RS28000
type: Gene
subclass of: SO_0000704
RO_0002162: 571
locus tag: EGY21_RS28000
old locus tag: EGY21_27965
so part of: sequence
location: 1334..1741
location: region:1334-1741:1
so has part: feature:1334-1741:1:exon
subclass of: SO_0000010

39459697
type: Gene
SIO_000068: ncbigene

position:1334:1
position: 1334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1741:1
position: 1741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1334-1741:1:exon

EGY21_RS28000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 571
locus tag: EGY21_RS28000
old locus tag: EGY21_27965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000016535.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MSGQEQENKQSKAVRERTFKVRLSESEYQLLDSNNPYGSIAKLLRQAAVEKATKIHNSKAEDDQKIKATKVVESSYSKTERALILELGRIGNNVNQIAKAVNTDIAGVGTFDKVKLLHLLISIDQQLRELRPDDR
SIO_010081: EGY21_RS28000
subclass of: SO_0000673
so part of: EGY21_RS28000
location: 1334..1741
location: region:1334-1741:1
so has part: feature:1334-1741:1:exon

WP_000016535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1334-1741:1:exon

EGY21_RS28005
type: Gene
subclass of: SO_0000704
RO_0002162: 571
locus tag: EGY21_RS28005
old locus tag: EGY21_27970
so part of: sequence
location: 1731..3545
location: region:1731-3545:1
so has part: feature:1731-3545:1:exon
subclass of: SO_0000010

39459694
type: Gene
SIO_000068: ncbigene

position:1731:1
position: 1731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3545:1
position: 3545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1731-3545:1:exon

EGY21_RS28005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 571
locus tag: EGY21_RS28005
old locus tag: EGY21_27970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000634474.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIVDFFRHGSGLSKGCLDYLLGEDREREHAQVLNGDVELTAQLIDSSPFAKKYTSGCLSFYEHDLSDQDKQKIMQNFEECLFPGLDKDQYQILWVQHQDKINQDTGETRLELNFVIPNVELSTGKRLQPFYAPVDLDRVDLFKQITNTEHSLYDPDDPEHRQLFLNKKNLPKDIKDFKAQLHQRVYRAVANGDVADRQELVQWLESNQINVTRQVKNSISIENPYEGAKRPIRLEGEIYEQGFRATGEYRQEVQQRIEEYRGTTSERYRTNVTDYQRQLEHKSQYHCDRYPTVGRENSPEHSKQRPDGREAVKPVSNLAAIEIEPFNAIKRANTEPRTTSPESSGTEKTYHFEYGTDFSSSYFAYSNFLAWSRHQKQVQRDADAKYRDQREANEGRPFEPIGRQFDDQHMQATRQQSTAPMYSDQQERRRMAERLHDSNGVLNDDRIRNTIIENHRRTTATINATTSAIAEATASFRHNANQNYPSLVSTIKDNQERSAKLTASTEIISDNAEAISRARTKYSKLYRADQWQSPRDEPYHSQQRRNSGENLNHTAFCLVRSSQSAAEFARNIRDIEKNLVQMNERKQEIEKPRPKQDRGMDFGM
SIO_010081: EGY21_RS28005
subclass of: SO_0000673
so part of: EGY21_RS28005
location: 1731..3545
location: region:1731-3545:1
so has part: feature:1731-3545:1:exon

WP_000634474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1731-3545:1:exon

EGY21_RS28010
type: Gene
subclass of: SO_0000704
RO_0002162: 571
locus tag: EGY21_RS28010
old locus tag: EGY21_27975
so part of: sequence
location: 3654..4139
location: region:3654-4139:1
so has part: feature:3654-4139:1:exon
subclass of: SO_0000010

39459693
type: Gene
SIO_000068: ncbigene

position:3654:1
position: 3654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4139:1
position: 4139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3654-4139:1:exon

EGY21_RS28010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 571
locus tag: EGY21_RS28010
old locus tag: EGY21_27975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005200081.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNNNCVVVLTARGKTRILKEGGSQSWRLNAHNAGKCDYLVCVQNRKQSWGEPEADHHTAFLVGKISSISQSQEEDADGRWIINISEYADISIPNMWDGNRNPVSYSSLEEMNIDLNELKFTKLNEDNSSKTLDKISIPEAKRLLANYFDVPQENISITINM
SIO_010081: EGY21_RS28010
subclass of: SO_0000673
so part of: EGY21_RS28010
location: 3654..4139
location: region:3654-4139:1
so has part: feature:3654-4139:1:exon

WP_051064109.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3654-4139:1:exon

EGY21_RS28015
type: Gene
subclass of: SO_0000704
RO_0002162: 571
locus tag: EGY21_RS28015
old locus tag: EGY21_27980
so part of: sequence
location: 4272..4940
location: region:4272-4940:1
so has part: feature:4272-4940:1:exon
subclass of: SO_0000010

39459695
type: Gene
SIO_000068: ncbigene

position:4272:1
position: 4272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4940:1
position: 4940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4272-4940:1:exon

EGY21_RS28015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 571
locus tag: EGY21_RS28015
old locus tag: EGY21_27980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000423610.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Abi family protein
translation: MELSNDAVLKIEQALSIPRLSKYENFYKDKGEPYEKSDVLMLYERNLIISNKFFYLLNYFEVVLRNAVVQAIEISFRCNETNSWHENEAFIRSLSRRGRYSPKSMFDSAKEKFPDSPSKMIPELKFVFWQKMLMANYEERIWQGCFNSIFPNATVENRQIFYDWTDQLRELRNRIAHHEPIIFNRNLENDLEVLTKFIYCRCINTYDFIEQSALDLKEYLDF
SIO_010081: EGY21_RS28015
subclass of: SO_0000673
so part of: EGY21_RS28015
location: 4272..4940
location: region:4272-4940:1
so has part: feature:4272-4940:1:exon

WP_000423610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4272-4940:1:exon

EGY21_RS28020
type: Gene
subclass of: SO_0000704
RO_0002162: 571
gene: aadB
locus tag: EGY21_RS28020
old locus tag: EGY21_27985
so part of: sequence
location: complement(5099..5632)
location: region:5099-5632:-1
so has part: feature:5099-5632:-1:exon
subclass of: SO_0000010

39459696
type: Gene
SIO_000068: ncbigene

position:5099:-1
position: 5099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5632:-1
position: 5632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5099-5632:-1:exon

EGY21_RS28020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 571
gene: aadB
locus tag: EGY21_RS28020
old locus tag: EGY21_27985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000381802.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside nucleotidyltransferase ANT(2'')-Ia
translation: MDTTQVALIHQILAAADERNLPLWIGGGWAIDARLGRVTRKHDDIDLTFPGERRGELEAIVEMLGGRVTEELDYGFLAEIGDELLDCEPAWWADEAYEIAEAPQGSCPEAAEGVIAGRPVRCNSWEAIIWDYFYYADEVPPVDWPTKHIESYRFACTSLGAEKVEVLRAAFRSRYAA
SIO_010081: EGY21_RS28020
subclass of: SO_0000673
so part of: EGY21_RS28020
location: complement(5099..5632)
location: region:5099-5632:-1
so has part: feature:5099-5632:-1:exon

WP_010883707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5099-5632:-1:exon