Lacticaseibacillus zeae isolate CECT 9104 plasmid 2.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus.
Submitted (05-JUL-2018) BIOPOLIS, Food Biotechnology, C/ Catedratico Agustin Escardino Benclloch, 9. Paterna (Valencia), Spain
REFSEQ INFORMATION: The reference sequence is identical to\nLS991422.1.\nThe organism was changed from 'Lactobacillus casei' to\n'Lactobacillus zeae' in July 2020.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Taxonomic-Update-Statistics-START##\nThis Genome (query) :: GCA_900492555.1\nCurrent Name :: Lactobacillus zeae\nPrevious Name :: Lactobacillus casei\nDate Updated :: 2020-07-31\nAnalysis Type :: Average Nucleotide Identity (ANI)\nAnalysis 1 (A1) :: Query vs. TYPE genome for current name\nA1 Genome (subject) :: GCA_000260435.1\nA1 Name :: Lactobacillus zeae\nA1 ANI :: 96.82%\nA1 Query Coverage :: 86.28%\nA1 Subject Coverage :: 85.26%\nAnalysis 2 (A2) :: Query vs. TYPE genome for previous name\nA2 Genome (subject) :: GCA_000829055.1\nA2 Name :: Lactobacillus casei\nA2 ANI :: 94.6%\nA2 Query Coverage :: 76.03%\nA2 Subject Coverage :: 79.14%\n##Taxonomic-Update-Statistics-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 03:33:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,895\nCDSs (total) :: 2,819\nGenes (coding) :: 2,775\nCDSs (with protein) :: 2,775\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 3\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 22 of 44\nPseudo Genes (incomplete) :: 16 of 44\nPseudo Genes (internal stop) :: 11 of 44\nPseudo Genes (multiple problems) :: 5 of 44\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_011861009.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
frameshifted; incomplete; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005688530.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017663.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
RusA family crossover junction endodeoxyribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_003661420.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016373297.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595274.1
COORDINATES: similar to AA sequence:RefSeq:WP_010489691.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005712721.1
COORDINATES: similar to AA sequence:RefSeq:WP_005712719.1
COORDINATES: similar to AA sequence:RefSeq:WP_019897204.1
COORDINATES: similar to AA sequence:RefSeq:WP_010489699.1
COORDINATES: similar to AA sequence:RefSeq:WP_005688514.1
COORDINATES: similar to AA sequence:RefSeq:WP_016388313.1
COORDINATES: similar to AA sequence:RefSeq:WP_015992509.1
COORDINATES: similar to AA sequence:RefSeq:WP_005711343.1
COORDINATES: similar to AA sequence:RefSeq:WP_010489711.1
COORDINATES: protein motif:HMM:NF019945.2
COORDINATES: similar to AA sequence:RefSeq:WP_003661435.1
phage antirepressor KilAC domain-containing protein
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: similar to AA sequence:RefSeq:WP_016363722.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: similar to AA sequence:RefSeq:WP_016373255.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577897.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572665.1
COORDINATES: similar to AA sequence:RefSeq:WP_020751601.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595182.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595185.1
COORDINATES: similar to AA sequence:RefSeq:WP_020751696.1
COORDINATES: similar to AA sequence:RefSeq:WP_005714777.1
COORDINATES: similar to AA sequence:RefSeq:WP_016372305.1
COORDINATES: similar to AA sequence:RefSeq:WP_005688588.1
COORDINATES: similar to AA sequence:RefSeq:WP_016363183.1
COORDINATES: similar to AA sequence:RefSeq:WP_005712773.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015992493.1
COORDINATES: similar to AA sequence:RefSeq:WP_015764354.1
COORDINATES: similar to AA sequence:RefSeq:WP_016364532.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015968159.1
COORDINATES: similar to AA sequence:RefSeq:WP_003661388.1
COORDINATES: similar to AA sequence:RefSeq:WP_016388289.1
COORDINATES: similar to AA sequence:RefSeq:WP_016364528.1
COORDINATES: similar to AA sequence:RefSeq:WP_005686973.1
GO:0044423 - virion component [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.