Thermus brockianus strain SNM4-1 plasmid pTbrSNM4-1c, complete sequence.
Bacteria; Deinococcota; Deinococci; Thermales; Thermaceae; Thermus.
Complete Genome Sequences of Thermus Strains Isolated from Senami Hot Spring in Japan
Microbiol Resour Announc 11 (7), e0035422 (2022)
Submitted (21-FEB-2022) Contact:Kentaro Miyazaki National Institute of Advanced Industrial Science and Technology; 1-1-1 Higashi, Tsukuba 305-8566, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP025595.1.\nAnnotated by DFAST https://dfast.ddbj.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Coverage :: 214x\nSequencing Technology :: MiSeq; GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 11:05:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,545\nCDSs (total) :: 2,489\nGenes (coding) :: 2,439\nCDSs (with protein) :: 2,439\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 33 of 50\nPseudo Genes (incomplete) :: 19 of 50\nPseudo Genes (internal stop) :: 10 of 50\nPseudo Genes (multiple problems) :: 12 of 50\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF019575.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011228558.1
IS256-like element ISTth4 family transposase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014271874.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461184.1
COORDINATES: similar to AA sequence:RefSeq:WP_014271876.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461182.1
COORDINATES: similar to AA sequence:RefSeq:WP_014271879.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461176.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014271881.1
COORDINATES: similar to AA sequence:RefSeq:WP_014271882.1
COORDINATES: similar to AA sequence:RefSeq:WP_012258384.1
COORDINATES: similar to AA sequence:RefSeq:WP_012258385.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014630459.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012477500.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461195.1
COORDINATES: similar to AA sequence:RefSeq:WP_014271895.1
COORDINATES: similar to AA sequence:RefSeq:WP_014271896.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461192.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461191.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018461190.1
COORDINATES: similar to AA sequence:RefSeq:WP_018461188.1
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: similar to AA sequence:RefSeq:WP_011174358.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018461836.1
COORDINATES: protein motif:HMM:TIGR02532.1