Streptococcus suis BM407 plasmid pBM407, complete sequence.
type: Entry
definition: Streptococcus suis BM407 plasmid pBM407, complete sequence.
sequence version: NC_012923.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NC_012923.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA2272697
keyword: RefSeq
source: Streptococcus suis BM407
organism: Streptococcus suis BM407
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.
reference: 1
references: 19603075
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nFM252033.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 11:07:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,135\nCDSs (total) :: 2,063\nGenes (coding) :: 2,000\nCDSs (with protein) :: 2,000\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 35 of 63\nPseudo Genes (incomplete) :: 28 of 63\nPseudo Genes (internal stop) :: 11 of 63\nPseudo Genes (multiple problems) :: 10 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 24579
topology: circular
so has quality: SO_0000988
location: 1..24579
location: region:1-24579:1
RO_0002162: 568814

NC_012923
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA2272697
type: BioSample
SIO_000068: biosample

1
title: Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis
author: Holden, M.T.
author: Hauser, H.
author: Sanders, M.
author: Ngo, T.H.
author: Cherevach, I.
author: Cronin, A.
author: Goodhead, I.
author: Mungall, K.
author: Quail, M.A.
author: Price, C.
author: Rabbinowitsch, E.
author: Sharp, S.
author: Croucher, N.J.
author: Chieu, T.B.
author: Mai, N.T.
author: Diep, T.S.
author: Chinh, N.T.
author: Kehoe, M.
author: Leigh, J.A.
author: Ward, P.N.
author: Dowson, C.G.
author: Whatmore, A.M.
author: Chanter, N.
author: Iversen, P.
author: Gottschalk, M.
author: Slater, J.D.
author: Smith, H.E.
author: Spratt, B.G.
author: Xu, J.
author: Ye, C.
author: Bentley, S.
author: Barrell, B.G.
author: Schultsz, C.
author: Maskell, D.J.
author: Parkhill, J.
journal: PLoS One 4 (7), e6072 (2009)
pubmed: 19603075
comments: Publication Status: Online-Only

19603075
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Holden, M.T.G.
journal: Submitted (20-OCT-2008) Holden M.T.G., Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24579:1
position: 24579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24579:1:source
so part of: sequence
organism: Streptococcus suis BM407
mol type: genomic DNA
strain: BM407
isolation source: human case of meningitis
plasmid: pBM407
country: Viet Nam:Ho Chi Minh City
collection date: 2004

568814
type: Taxonomy
SIO_000068: taxonomy

SSUBM407_RS10465
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10465
old locus tag: SSUBM407_p001
so part of: sequence
location: 1..897
location: region:1-897:1
so has part: feature:1-897:1:exon
subclass of: SO_0000010

8149068
type: Gene
SIO_000068: ncbigene

position:897:1
position: 897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-897:1:exon

SSUBM407_RS10465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10465
old locus tag: SSUBM407_p001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002355409.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MIQYYYTKKEWGVVMEKEELKILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDLIIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWSKNGITEHKGYDKKVLSMYKNVFFEMLERIIQLENEKE
SIO_010081: SSUBM407_RS10465
subclass of: SO_0000673
so part of: SSUBM407_RS10465
location: 1..897
location: region:1-897:1
so has part: feature:1-897:1:exon

WP_001835294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-897:1:exon

SSUBM407_RS10470
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10470
old locus tag: SSUBM407_p002
so part of: sequence
location: 989..1204
location: region:989-1204:1
so has part: feature:989-1204:1:exon
subclass of: SO_0000010

8149051
type: Gene
SIO_000068: ncbigene

position:989:1
position: 989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1204:1
position: 1204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:989-1204:1:exon

SSUBM407_RS10470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10470
old locus tag: SSUBM407_p002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002401482.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptide-binding protein
translation: MIVGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL
SIO_010081: SSUBM407_RS10470
subclass of: SO_0000673
so part of: SSUBM407_RS10470
location: 989..1204
location: region:989-1204:1
so has part: feature:989-1204:1:exon

WP_001835296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:989-1204:1:exon

SSUBM407_RS10475
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10475
old locus tag: SSUBM407_p003
so part of: sequence
location: 1221..1493
location: region:1221-1493:1
so has part: feature:1221-1493:1:exon
subclass of: SO_0000010

8149052
type: Gene
SIO_000068: ncbigene

position:1221:1
position: 1221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1493:1
position: 1493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1221-1493:1:exon

SSUBM407_RS10475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10475
old locus tag: SSUBM407_p003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002333002.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antitoxin
translation: MAVTYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLNKEKVA
SIO_010081: SSUBM407_RS10475
subclass of: SO_0000673
so part of: SSUBM407_RS10475
location: 1221..1493
location: region:1221-1493:1
so has part: feature:1221-1493:1:exon

WP_000301765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1221-1493:1:exon

SSUBM407_RS10480
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10480
old locus tag: SSUBM407_p004
so part of: sequence
location: 1495..2358
location: region:1495-2358:1
so has part: feature:1495-2358:1:exon
subclass of: SO_0000010

8149053
type: Gene
SIO_000068: ncbigene

position:1495:1
position: 1495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2358:1
position: 2358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1495-2358:1:exon

SSUBM407_RS10480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10480
old locus tag: SSUBM407_p004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010782381.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zeta toxin family protein
translation: MANIVNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLESLQPPTPPIPKTPKLPGI
SIO_010081: SSUBM407_RS10480
subclass of: SO_0000673
so part of: SSUBM407_RS10480
location: 1495..2358
location: region:1495-2358:1
so has part: feature:1495-2358:1:exon

WP_001284311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1495-2358:1:exon

SSUBM407_RS10485
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10485
old locus tag: SSUBM407_p005
so part of: sequence
location: complement(2663..3343)
location: region:2663-3343:-1
so has part: feature:2663-3343:-1:exon
subclass of: SO_0000010

8149054
type: Gene
SIO_000068: ncbigene

position:2663:-1
position: 2663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3343:-1
position: 3343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2663-3343:-1:exon

SSUBM407_RS10485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10485
old locus tag: SSUBM407_p005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
SIO_010081: SSUBM407_RS10485
subclass of: SO_0000673
so part of: SSUBM407_RS10485
location: complement(2663..3343)
location: region:2663-3343:-1
so has part: feature:2663-3343:-1:exon

WP_001015311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2663-3343:-1:exon

SSUBM407_RS10490
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10490
old locus tag: SSUBM407_p006
so part of: sequence
location: complement(3397..4065)
location: region:3397-4065:-1
so has part: feature:3397-4065:-1:exon
subclass of: SO_0000010

8149055
type: Gene
SIO_000068: ncbigene

position:3397:-1
position: 3397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4065:-1
position: 4065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3397-4065:-1:exon

SSUBM407_RS10490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10490
old locus tag: SSUBM407_p006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018380718.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator transcription factor
translation: MLNIFVLEDDFFQQSRLENAIRQCVEETSVRYKFLEVFGKPNQLLESIEEAGNHQFFFLDIEIKGEEKKGMEIAKEIRARDPYAVIVFVTTHSEFMPVTYRYRVSALDFIDKGLEDSDFQKAVSDVLVHAFENIDHTIAENSFIYKTETAHIQVPFSDILYFETSSTIHKVILKTKTGQTEFYGKVSDIAKADERLYQAHRSCVVNPLNITRLDRTGSVAKF
SIO_010081: SSUBM407_RS10490
subclass of: SO_0000673
so part of: SSUBM407_RS10490
location: complement(3397..4065)
location: region:3397-4065:-1
so has part: feature:3397-4065:-1:exon

WP_044475470.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3397-4065:-1:exon

SSUBM407_RS10495
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10495
old locus tag: SSUBM407_p007
so part of: sequence
location: complement(4069..4401)
location: region:4069-4401:-1
so has part: feature:4069-4401:-1:exon
subclass of: SO_0000010

8149056
type: Gene
SIO_000068: ncbigene

position:4069:-1
position: 4069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4401:-1
position: 4401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4069-4401:-1:exon

SSUBM407_RS10495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10495
old locus tag: SSUBM407_p007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012774870.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LytTR family DNA-binding domain-containing protein
translation: MNFLIVNKDDISMKLFLEDIFYISSDTTKPHMLKAVTESGVFEFYGTLKDLEDKLKLNFFRCHRKFLVNIDKIQGLNLSERLIVFTNDGVGTISFSRYKQKELNKLWRRG
SIO_010081: SSUBM407_RS10495
subclass of: SO_0000673
so part of: SSUBM407_RS10495
location: complement(4069..4401)
location: region:4069-4401:-1
so has part: feature:4069-4401:-1:exon

WP_012774870.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4069-4401:-1:exon

SSUBM407_RS10500
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10500
old locus tag: SSUBM407_p008
so part of: sequence
location: 4591..4959
location: region:4591-4959:1
so has part: feature:4591-4959:1:exon
subclass of: SO_0000010

8149057
type: Gene
SIO_000068: ncbigene

position:4591:1
position: 4591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4959:1
position: 4959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4591-4959:1:exon

SSUBM407_RS10500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10500
old locus tag: SSUBM407_p008
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFYIIEQQNKNLQITKIISDYLKNRYPKIAFKILQSFKAPPTHQSNTYFIINEDICLNEQELEVAKNIRKNDRFGHIILISKNINYLQLFRSHINFLEIIDCNNNLKEDIYNCIDFLNKNIS
SIO_010081: SSUBM407_RS10500
subclass of: SO_0000673
so part of: SSUBM407_RS10500
location: 4591..4959
location: region:4591-4959:1
so has part: feature:4591-4959:1:exon

WP_044981369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4591-4959:1:exon

SSUBM407_RS10505
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10505
old locus tag: SSUBM407_p009
so part of: sequence
location: complement(4988..5578)
location: region:4988-5578:-1
so has part: feature:4988-5578:-1:exon
subclass of: SO_0000010

8149058
type: Gene
SIO_000068: ncbigene

position:4988:-1
position: 4988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5578:-1
position: 5578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4988-5578:-1:exon

SSUBM407_RS10505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10505
old locus tag: SSUBM407_p009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012774871.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSRIGYIRISSKDQNLDRQVENLSDVFKVFSDKLSGKDKNRPGLEELLSFIREGDIVVVSELDRLGRNNKELTEVISMIHSKGATLEILSFPSLIGIKDDNLRRLLNNLIIEIYKYQAEAERVRLLERQRQGIEIAKRKGKYKGRKPLFTSASPQLQHAFELFKSGCSDRDIEDLVGINARTFRRYREKFGIKRTT
SIO_010081: SSUBM407_RS10505
subclass of: SO_0000673
so part of: SSUBM407_RS10505
location: complement(4988..5578)
location: region:4988-5578:-1
so has part: feature:4988-5578:-1:exon

WP_012774871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4988-5578:-1:exon

SSUBM407_RS10510
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10510
old locus tag: SSUBM407_p010
so part of: sequence
location: complement(5724..7214)
location: region:5724-7214:-1
so has part: feature:5724-7214:-1:exon
subclass of: SO_0000010

8149059
type: Gene
SIO_000068: ncbigene

position:5724:-1
position: 5724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7214:-1
position: 7214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5724-7214:-1:exon

SSUBM407_RS10510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10510
old locus tag: SSUBM407_p010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002943500.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: primase C-terminal domain-containing protein
translation: MNINIEKIHQMILKDGLRQFKFKNSKHENTPFEEQKGAIFGYRSKKNMTAGRGIVLTSLEAVEDNQTVFTHWTPNVYRYGTYSQKNPRITKGHSENNLRQINAFYIDFDLKNQSDNINFSDILVSSLDLGFMPTLILKTENGYQAYFILKDAAYVTAATEFKVVNVAKMISQNIRNHFIKDLPVDMTCNHFGIARIPREDNIEYFDQNNVYTFAEWFNWSMQQDDLTYSKKPNLLVLSGTEGQKQIDEPWYRLLKNTSKIRGEKAIMGRNNVIFTLALANYASGVAYSDCMEELSDYNAELEVPLKKNELKKTIASAYSGRYEAANRDFIKILCQTWISSDLTTKDLFIRQGWYKFKKSRDQRQRSHFSEWREDFWNYIKQKTNSDSPYLRVKKKEITATIGIPERSLDYVLKTLQSEGKILYSFKRGRQGGIILASISNIALSLISMNKKAREAYYIALSRILGVSKGILIKLLKRAIIGLTTPQTSSLFELDTG
SIO_010081: SSUBM407_RS10510
subclass of: SO_0000673
so part of: SSUBM407_RS10510
location: complement(5724..7214)
location: region:5724-7214:-1
so has part: feature:5724-7214:-1:exon

WP_012774872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5724-7214:-1:exon

SSUBM407_RS10515
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10515
so part of: sequence
location: complement(7586..7783)
location: region:7586-7783:-1
so has part: feature:7586-7783:-1:exon
subclass of: SO_0000010

44144900
type: Gene
SIO_000068: ncbigene

position:7586:-1
position: 7586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7783:-1
position: 7783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7586-7783:-1:exon

SSUBM407_RS10515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018372616.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MAELKNNVKRFRVRKAFTQEQLASKVNCSRQLISSIERGKMVPSVLIALKIAKILEVCVDDIFTF
SIO_010081: SSUBM407_RS10515
subclass of: SO_0000673
so part of: SSUBM407_RS10515
location: complement(7586..7783)
location: region:7586-7783:-1
so has part: feature:7586-7783:-1:exon

WP_044475471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7586-7783:-1:exon

SSUBM407_RS10520
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10520
so part of: sequence
location: complement(7904..8056)
location: region:7904-8056:-1
so has part: feature:7904-8056:-1:exon
subclass of: SO_0000010

44144901
type: Gene
SIO_000068: ncbigene

position:7904:-1
position: 7904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8056:-1
position: 8056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7904-8056:-1:exon

SSUBM407_RS10520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001180497.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class IIb bacteriocin, lactobin A/cerein 7B family
translation: MENIKKFEEVSTEELTSVEGGVGVLAVIGWSLLAAGGSGLVGYGLARTFG
SIO_010081: SSUBM407_RS10520
subclass of: SO_0000673
so part of: SSUBM407_RS10520
location: complement(7904..8056)
location: region:7904-8056:-1
so has part: feature:7904-8056:-1:exon

WP_044475472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7904-8056:-1:exon

SSUBM407_RS10525
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10525
so part of: sequence
location: complement(8195..8380)
location: region:8195-8380:-1
so has part: feature:8195-8380:-1:exon
subclass of: SO_0000010

44144902
type: Gene
SIO_000068: ncbigene

position:8195:-1
position: 8195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8380:-1
position: 8380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8195-8380:-1:exon

SSUBM407_RS10525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000180829.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class IIb bacteriocin, lactobin A/cerein 7B family
translation: MTKFETMDKMNVDFVALSDRELMDMEGGIIPVAVAAGIVASAAFAGLSAGVTIGISRNGRK
SIO_010081: SSUBM407_RS10525
subclass of: SO_0000673
so part of: SSUBM407_RS10525
location: complement(8195..8380)
location: region:8195-8380:-1
so has part: feature:8195-8380:-1:exon

WP_044475473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8195-8380:-1:exon

SSUBM407_RS10530
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10530
so part of: sequence
location: complement(9053..9214)
location: region:9053-9214:-1
so has part: feature:9053-9214:-1:exon
subclass of: SO_0000010

44144903
type: Gene
SIO_000068: ncbigene

position:9053:-1
position: 9053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9214:-1
position: 9214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9053-9214:-1:exon

SSUBM407_RS10530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004181943.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class IIb bacteriocin, lactobin A/cerein 7B family
translation: MNKFNTLCDDELVMIEGGLDPFTVTIGLGTLFLAAASGGYAFGKDLANRQRRK
SIO_010081: SSUBM407_RS10530
subclass of: SO_0000673
so part of: SSUBM407_RS10530
location: complement(9053..9214)
location: region:9053-9214:-1
so has part: feature:9053-9214:-1:exon

WP_079395234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9053-9214:-1:exon

SSUBM407_RS10535
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10535
so part of: sequence
location: complement(9412..9621)
location: region:9412-9621:-1
so has part: feature:9412-9621:-1:exon
subclass of: SO_0000010

44144904
type: Gene
SIO_000068: ncbigene

position:9412:-1
position: 9412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9621:-1
position: 9621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9412-9621:-1:exon

SSUBM407_RS10535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000180816.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class IIb bacteriocin, lactobin A/cerein 7B family
translation: MTKFETMDKMNVDFVALTEEELMNVDGGLLPVVVGGVVVGWKVAAGVTAGVIAGGVAIGAAAGYFANRP
SIO_010081: SSUBM407_RS10535
subclass of: SO_0000673
so part of: SSUBM407_RS10535
location: complement(9412..9621)
location: region:9412-9621:-1
so has part: feature:9412-9621:-1:exon

WP_044475475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9412-9621:-1:exon

SSUBM407_RS10540
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10540
old locus tag: SSUBM407_p011
so part of: sequence
location: complement(9930..10187)
location: region:9930-10187:-1
so has part: feature:9930-10187:-1:exon
subclass of: SO_0000010

8149065
type: Gene
SIO_000068: ncbigene

position:9930:-1
position: 9930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10187:-1
position: 10187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9930-10187:-1:exon

SSUBM407_RS10540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10540
old locus tag: SSUBM407_p011
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELRSEVLSEDNFYILENIFRVKEVPLELMTKLGTKKDDLAADYERKVLPQIPNKDQEEFEYIFDYNQRLFNELFERYQKYNESR
SIO_010081: SSUBM407_RS10540
subclass of: SO_0000673
so part of: SSUBM407_RS10540
location: complement(9930..10187)
location: region:9930-10187:-1
so has part: feature:9930-10187:-1:exon

WP_228475143.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9930-10187:-1:exon

SSUBM407_RS10545
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10545
so part of: sequence
location: complement(10376..10531)
location: region:10376-10531:-1
so has part: feature:10376-10531:-1:exon
subclass of: SO_0000010

44144905
type: Gene
SIO_000068: ncbigene

position:10376:-1
position: 10376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10531:-1
position: 10531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10376-10531:-1:exon

SSUBM407_RS10545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10545
inference: COORDINATES: protein motif:HMM:TIGR03949.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class IIb bacteriocin, lactobin A/cerein 7B family
translation: MTNFEVIDKTNFVALSEVEMMETEGGFATGLGIAIGTVAVYCIGYMIGKNK
SIO_010081: SSUBM407_RS10545
subclass of: SO_0000673
so part of: SSUBM407_RS10545
location: complement(10376..10531)
location: region:10376-10531:-1
so has part: feature:10376-10531:-1:exon

WP_153308592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10376-10531:-1:exon

SSUBM407_RS10550
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10550
so part of: sequence
location: complement(10543..10722)
location: region:10543-10722:-1
so has part: feature:10543-10722:-1:exon
subclass of: SO_0000010

44144906
type: Gene
SIO_000068: ncbigene

position:10543:-1
position: 10543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10722:-1
position: 10722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10543-10722:-1:exon

SSUBM407_RS10550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003080524.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNFKVIDNTNFMALSEAEMMETEGGFVVTGTMIYTGVKLASASFALGYAIGQAIKNSK
SIO_010081: SSUBM407_RS10550
subclass of: SO_0000673
so part of: SSUBM407_RS10550
location: complement(10543..10722)
location: region:10543-10722:-1
so has part: feature:10543-10722:-1:exon

WP_044984792.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10543-10722:-1:exon

SSUBM407_RS10555
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10555
so part of: sequence
location: complement(10890..11027)
location: region:10890-11027:-1
so has part: feature:10890-11027:-1:exon
subclass of: SO_0000010

44144907
type: Gene
SIO_000068: ncbigene

position:10890:-1
position: 10890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11027:-1
position: 11027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10890-11027:-1:exon

SSUBM407_RS10555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTLTQKELVKTTGGSIIGLIGKGQTLRSPRIYLPGPVKPKLEVM
SIO_010081: SSUBM407_RS10555
subclass of: SO_0000673
so part of: SSUBM407_RS10555
location: complement(10890..11027)
location: region:10890-11027:-1
so has part: feature:10890-11027:-1:exon

WP_153585979.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10890-11027:-1:exon

SSUBM407_RS10560
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10560
so part of: sequence
location: complement(11145..11330)
location: region:11145-11330:-1
so has part: feature:11145-11330:-1:exon
subclass of: SO_0000010

44144908
type: Gene
SIO_000068: ncbigene

position:11145:-1
position: 11145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11330:-1
position: 11330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11145-11330:-1:exon

SSUBM407_RS10560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10560
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKLIDIDMTKLMDILMFSSLSCSFMYFLGAYLSGKSFDNPLTFVMLSGAVAGVLHLLDRV
SIO_010081: SSUBM407_RS10560
subclass of: SO_0000673
so part of: SSUBM407_RS10560
location: complement(11145..11330)
location: region:11145-11330:-1
so has part: feature:11145-11330:-1:exon

WP_044475477.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11145-11330:-1:exon

SSUBM407_RS10565
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10565
so part of: sequence
location: complement(11342..11497)
location: region:11342-11497:-1
so has part: feature:11342-11497:-1:exon
subclass of: SO_0000010

44144909
type: Gene
SIO_000068: ncbigene

position:11342:-1
position: 11342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11497:-1
position: 11497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11342-11497:-1:exon

SSUBM407_RS10565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003080524.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class IIb bacteriocin, lactobin A/cerein 7B family
translation: MNNFVDMKQEELENINGGFVVTGTMIYTGVKLASASFALGYAIGQAIKNSK
SIO_010081: SSUBM407_RS10565
subclass of: SO_0000673
so part of: SSUBM407_RS10565
location: complement(11342..11497)
location: region:11342-11497:-1
so has part: feature:11342-11497:-1:exon

WP_079395235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11342-11497:-1:exon

SSUBM407_RS10570
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10570
so part of: sequence
location: complement(11508..11669)
location: region:11508-11669:-1
so has part: feature:11508-11669:-1:exon
subclass of: SO_0000010

44144910
type: Gene
SIO_000068: ncbigene

position:11508:-1
position: 11508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11669:-1
position: 11669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11508-11669:-1:exon

SSUBM407_RS10570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000180826.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bacteriocin
translation: MTKFDTLDNMNFVALSESEMMETDGGLVITGPAIVGGLIVVGFGGLGLYLGSK
SIO_010081: SSUBM407_RS10570
subclass of: SO_0000673
so part of: SSUBM407_RS10570
location: complement(11508..11669)
location: region:11508-11669:-1
so has part: feature:11508-11669:-1:exon

WP_153585981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11508-11669:-1:exon

SSUBM407_RS10575
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10575
old locus tag: SSUBM407_p012
so part of: sequence
location: complement(11869..12765)
location: region:11869-12765:-1
so has part: feature:11869-12765:-1:exon
subclass of: SO_0000010

8149060
type: Gene
SIO_000068: ncbigene

position:11869:-1
position: 11869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12765:-1
position: 12765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11869-12765:-1:exon

SSUBM407_RS10575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10575
old locus tag: SSUBM407_p012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002943485.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotidyl transferase AbiEii/AbiGii toxin family protein
translation: MTPDEIRNTILKAIYSDTELVENLVLKGGNALKLHRIVDRESQDLDFSIKETIRFTKENEGVKLQQLITDAFRQKGFFVNSFEFVPKPKNRHRDLPPFWGGYKISFALLDQEKYQDKINSQDSRQMKELNKYALSIEGGVKKIEIDLSYDEYTEHKEAYDLDGTTIYLYSPLMIVYEKIRASCQQLEEYPLTTNKTRARDLYDIFKTLTNINQVELRSEVLSEDNFYILENIFRVKEVPLELMTKLDTKKDDLAADYERKVLPQISNKDREEFEYIFDYNQRLFNELFEKYQKYNESR
SIO_010081: SSUBM407_RS10575
subclass of: SO_0000673
so part of: SSUBM407_RS10575
location: complement(11869..12765)
location: region:11869-12765:-1
so has part: feature:11869-12765:-1:exon

WP_012774874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11869-12765:-1:exon

SSUBM407_RS10580
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10580
old locus tag: SSUBM407_p013
so part of: sequence
location: 12966..13949
location: region:12966-13949:1
so has part: feature:12966-13949:1:exon
subclass of: SO_0000010

8149061
type: Gene
SIO_000068: ncbigene

position:12966:1
position: 12966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13949:1
position: 13949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12966-13949:1:exon

SSUBM407_RS10580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10580
old locus tag: SSUBM407_p013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002943483.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVLSDEKIQNILLEKKITKDASNLVKYSDEIVIQARKEFGNILNRTSIIKILNDFKQSNKLKKSASVSKFIDIIIDKLGLFEPIKILNEYKGETVTRYIATDVQISPYEIALSLLSKSFLSHYSALFVNDLTINNPKDIYINKEQSKKDFYSNNEQNISQGRIDYAFSKKMRRTNMIYSFTYDETSYKVHVLNSKNTNNTGVVLKNVVGFSKPVRTTNIERTLIDATVRPGYSGGALEILEAFLRAKNELNSKQLWSYLKKFNYSYPYHKAIAFYLKYSDYSYKNELVDFCNNDNQNSLTFYLDYQMVSPQKDDELGIYFPKMIPLK
SIO_010081: SSUBM407_RS10580
subclass of: SO_0000673
so part of: SSUBM407_RS10580
location: 12966..13949
location: region:12966-13949:1
so has part: feature:12966-13949:1:exon

WP_012774875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12966-13949:1:exon

SSUBM407_RS10585
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10585
old locus tag: SSUBM407_p014
so part of: sequence
location: complement(14022..14702)
location: region:14022-14702:-1
so has part: feature:14022-14702:-1:exon
subclass of: SO_0000010

8149062
type: Gene
SIO_000068: ncbigene

position:14022:-1
position: 14022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14702:-1
position: 14702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14022-14702:-1:exon

SSUBM407_RS10585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10585
old locus tag: SSUBM407_p014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
SIO_010081: SSUBM407_RS10585
subclass of: SO_0000673
so part of: SSUBM407_RS10585
location: complement(14022..14702)
location: region:14022-14702:-1
so has part: feature:14022-14702:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14022-14702:-1:exon

SSUBM407_RS10590
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
gene: addA
locus tag: SSUBM407_RS10590
old locus tag: SSUBM407_p015
so part of: sequence
location: complement(14890..18540)
location: region:14890-18540:-1
so has part: feature:14890-18540:-1:exon
subclass of: SO_0000010

8149063
type: Gene
SIO_000068: ncbigene

position:14890:-1
position: 14890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18540:-1
position: 18540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14890-18540:-1:exon

SSUBM407_RS10590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
gene: addA
locus tag: SSUBM407_RS10590
old locus tag: SSUBM407_p015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014638042.1
GO function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
GO process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helicase-exonuclease AddAB subunit AddA
translation: MAFEQFLSAEEIKAVQLAEAHSDKQQKRTAEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELKERIEKKLNETIAETTDMELRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQLFADYLEEDENGAFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQMLEQGFKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPKDEHLIAFKEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAIRILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQSGKLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQDSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWRAYAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQMRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVRAALEAVHAEQAIKDKINVQMILDFFDTDLGREILANTDKLHREAPFASLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKIDRVDCHLILLGGERIEVVEVNI
SIO_010081: SSUBM407_RS10590
subclass of: SO_0000673
so part of: SSUBM407_RS10590
location: complement(14890..18540)
location: region:14890-18540:-1
so has part: feature:14890-18540:-1:exon

WP_012775061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14890-18540:-1:exon

SSUBM407_RS10595
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
gene: rexB
locus tag: SSUBM407_RS10595
old locus tag: SSUBM407_p016
so part of: sequence
location: complement(18540..21806)
location: region:18540-21806:-1
so has part: feature:18540-21806:-1:exon
subclass of: SO_0000010

8149066
type: Gene
SIO_000068: ncbigene

position:21806:-1
position: 21806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18540-21806:-1:exon

SSUBM407_RS10595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
gene: rexB
locus tag: SSUBM407_RS10595
old locus tag: SSUBM407_p016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015646904.1
GO process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-dependent nuclease subunit B
translation: MKLVYTDIRNPLTQYLTEQTATFAEQGKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQPLDDVGLAMIFFRVLSQFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSKEGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILIGVYASKKAVQATYAEGNVYQANVDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQKELDLFESYILFADMKGQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALLEKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVRHLKKKLESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILCTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAMDILAGRFAINPYTKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD
SIO_010081: SSUBM407_RS10595
subclass of: SO_0000673
so part of: SSUBM407_RS10595
location: complement(18540..21806)
location: region:18540-21806:-1
so has part: feature:18540-21806:-1:exon

WP_012774876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18540-21806:-1:exon

SSUBM407_RS10600
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10600
old locus tag: SSUBM407_p017
so part of: sequence
location: complement(22097..23476)
location: region:22097-23476:-1
so has part: feature:22097-23476:-1:exon
subclass of: SO_0000010

8149067
type: Gene
SIO_000068: ncbigene

position:22097:-1
position: 22097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23476:-1
position: 23476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22097-23476:-1:exon

SSUBM407_RS10600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10600
old locus tag: SSUBM407_p017
inference: COORDINATES: protein motif:HMM:NF018196.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MucBP domain-containing protein
translation: MIKDPETDVSDAPVGDAYTTTDKKPNEIITKDGSRYVLVPSKTDGEENGKVIEGTITVTYVYQKVANWIPEIPNVPETDRPKVPYPFDPTEPDEPIDPTTPGTNGEVPNIPYVPGYTPVDPKDNTPLKPIDPNDPGKGYVPPTPENPGVDTPIPYVPVKKVVTNHVDEEGNPIAPQEEGTKPNKSIPGYEFTGKTVTDEDGNTTHIYKKTPEVKNGTVVVNYVTEDGTVIKEPVTDTPTSPEGTPYDTTDNKPKTITFKGEEYELVRVDGTENGKVVEGETVVTYVYRKVETPAKKVVTNHVDEEGNPVAPQEEGTKPNKSIPGYEFTGKTVTDEDGNTTHIYKKTPAKKVVTNHVDEEGNPIAPQEDGTTPKRQISGYEYVRTVVDEEGNTTHIYRKLSNKPTTPEKETPAKPQAGKTASGKAQLPNTGEASSVAGALGTAMLVATLAFARKRRRNED
SIO_010081: SSUBM407_RS10600
subclass of: SO_0000673
so part of: SSUBM407_RS10600
location: complement(22097..23476)
location: region:22097-23476:-1
so has part: feature:22097-23476:-1:exon

WP_231844638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22097-23476:-1:exon

SSUBM407_RS10605
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10605
old locus tag: SSUBM407_p018
so part of: sequence
location: complement(23593..24273)
location: region:23593-24273:-1
so has part: feature:23593-24273:-1:exon
subclass of: SO_0000010

8149064
type: Gene
SIO_000068: ncbigene

position:23593:-1
position: 23593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24273:-1
position: 24273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23593-24273:-1:exon

SSUBM407_RS10605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10605
old locus tag: SSUBM407_p018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS1216 family transposase
translation: MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
SIO_010081: SSUBM407_RS10605
subclass of: SO_0000673
so part of: SSUBM407_RS10605
location: complement(23593..24273)
location: region:23593-24273:-1
so has part: feature:23593-24273:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23593-24273:-1:exon

SSUBM407_RS10610
type: Gene
subclass of: SO_0000704
RO_0002162: 568814
locus tag: SSUBM407_RS10610
pseudo: true
so part of: sequence
location: <24349..24477
location: region:24349-24477:1
so has part: feature:24349-24477:1:exon
subclass of: SO_0000010

44144911
type: Gene
SIO_000068: ncbigene

position:24349:1
position: 24349
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:24477:1
position: 24477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24349-24477:1:exon

SSUBM407_RS10610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 568814
locus tag: SSUBM407_RS10610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000108743.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: topoisomerase
SIO_010081: SSUBM407_RS10610
subclass of: SO_0000673
so part of: SSUBM407_RS10610
location: <24349..24477
location: region:24349-24477:1
so has part: feature:24349-24477:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24349-24477:1:exon