Fusarium venenatum strain A3/5 genome assembly, chromosome: v.
type: Entry
definition: Fusarium venenatum strain A3/5 genome assembly, chromosome: v.
sequence version: NC_038016.1
sequence date: 2018-07-12
sequence: sequence
division: CON
label: NC_038016.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA479922
dblink: SAMEA2827224
keyword: RefSeq
source: Fusarium venenatum
organism: Fusarium venenatum
taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium.
reference: 1
reference: 2
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to LN649233.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 9545
topology: linear
so has quality: SO_0000987
location: 1..9545
location: region:1-9545:1
RO_0002162: 56646

NC_038016
type: RefSeq
SIO_000068: refseq

PRJNA479922
type: BioProject
SIO_000068: bioproject

SAMEA2827224
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
journal: Submitted (06-JUL-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

2
title: Direct Submission
author: King, R.
journal: Submitted (21-OCT-2014) ROTHAMSTED RESEARCH, Applied Bioinformatics, W Common, Harpenden, AL5 2JQ, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9545:1
position: 9545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9545:1:source
so part of: sequence
organism: Fusarium venenatum
mol type: genomic DNA
strain: A3/5
chromosome: v

56646
type: Taxonomy
SIO_000068: taxonomy

FVRRES_13944
type: Gene
subclass of: SO_0000704
RO_0002162: 56646
locus tag: FVRRES_13944
so part of: sequence
location: <1998..>4225
location: region:1998-4225:1
so has part: feature:1998-4225:1:exon
subclass of: SO_0000010

37265573
type: Gene
SIO_000068: ncbigene

position:1998:1
position: 1998
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:4225:1
position: 4225
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1998-4225:1:exon

FVRRES_13944
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 56646
locus tag: FVRRES_13944
product: uncharacterized protein
transcript id: XM_025729367.1
SIO_010081: FVRRES_13944
subclass of: SO_0000673
so part of: FVRRES_13944
location: join(<1998..2042,2223..2353,2400..2797,2859..2987,3090..3145,3202..3657,3737..>4225)
location: region:1998-4225:1
so has part: feature:1998-2042:1:exon
so has part: feature:2223-2353:1:exon
so has part: feature:2400-2797:1:exon
so has part: feature:2859-2987:1:exon
so has part: feature:3090-3145:1:exon
so has part: feature:3202-3657:1:exon
so has part: feature:3737-4225:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1998-2042:1:exon

position:2042:1
position: 2042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2223-2353:1:exon

position:2223:1
position: 2223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2353:1
position: 2353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2400-2797:1:exon

position:2400:1
position: 2400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2797:1
position: 2797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2859-2987:1:exon

position:2859:1
position: 2859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2987:1
position: 2987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3090-3145:1:exon

position:3090:1
position: 3090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3145:1
position: 3145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3202-3657:1:exon

position:3202:1
position: 3202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3657:1
position: 3657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3737-4225:1:exon

position:3737:1
position: 3737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FVRRES_13944
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56646
locus tag: FVRRES_13944
codon start: 1
product: uncharacterized protein
translation: MYPAVPPRRSQLELAPKQIRCDRVKPTCDGCQVRGLPCTYPERRNRKKANPRKGQPKEPHLSDDVFSGLLERLLRVEEKCTHLVTDPSTAYTPLSINSPGSIQGSSSQIPGQTPEAHSVVSSVASGTFFDNDAEKTQGNDLPSYPGTPLIADVRLQQAFEQVLYLKRQNLFKQTVRNDHHIRPEIAKACIKNFCTHFQIDTFPSFINIKLMHFIPDIIDMPEVALDPAVLVLYYTWMERSVGTKTDLVSAILLMKASFQQCDFEFSWNMYRIVCQCVKKLNLHNLDQDFPSTSIRQSLDQGTDYDRQGLWALVLVDLFFRMLHDKPPIMTANLTEWHVNLPAINIVPEQPEYMISISTFFVKSRLTFLLLRFFDLLAQSSDDRDYIQQIEGLCAKIEDLIGEWSIRDLIDANEENASNWWTLYDLALTASCSMMVMSRKMEALHSEASGIPLPCHDKPVSDLSVNIARNVLKLALLGLEKYISPLAAAYLFGAFRCHVPYGCLVSHLFLSDPEEQGSTSLNDMALLEKVAQRMGAIAETDGDLLPLARTLHKLNISIHARWKEKMEQ
SIO_010081: FVRRES_13944
subclass of: SO_0000673
so part of: FVRRES_13944
location: join(1998..2042,2223..2353,2400..2797,2859..2987,3090..3145,3202..3657,3737..4225)
location: region:1998-4225:1
so has part: feature:1998-2042:1:exon
so has part: feature:2223-2353:1:exon
so has part: feature:2400-2797:1:exon
so has part: feature:2859-2987:1:exon
so has part: feature:3090-3145:1:exon
so has part: feature:3202-3657:1:exon
so has part: feature:3737-4225:1:exon

XP_025583641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1998-2042:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2223-2353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2400-2797:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2859-2987:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3090-3145:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3202-3657:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3737-4225:1:exon

FVRRES_13945
type: Gene
subclass of: SO_0000704
RO_0002162: 56646
locus tag: FVRRES_13945
so part of: sequence
location: complement(<4721..>6401)
location: region:4721-6401:-1
so has part: feature:4721-6401:-1:exon
subclass of: SO_0000010

37265574
type: Gene
SIO_000068: ncbigene

position:4721:-1
position: 4721
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:6401:-1
position: 6401
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4721-6401:-1:exon

FVRRES_13945
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 56646
locus tag: FVRRES_13945
product: uncharacterized protein
transcript id: XM_025729368.1
SIO_010081: FVRRES_13945
subclass of: SO_0000673
so part of: FVRRES_13945
location: complement(join(<4721..5757,5815..6045,6104..>6401))
location: region:4721-6401:-1
so has part: feature:6104-6401:-1:exon
so has part: feature:5815-6045:-1:exon
so has part: feature:4721-5757:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6104-6401:-1:exon

position:6104:-1
position: 6104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5815-6045:-1:exon

position:5815:-1
position: 5815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6045:-1
position: 6045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4721-5757:-1:exon

position:5757:-1
position: 5757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FVRRES_13945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56646
locus tag: FVRRES_13945
codon start: 1
product: uncharacterized protein
translation: MPIPTTITLALVIWIFPASYDHTLNRTAFSPPMASISNGFIVGTTTRVPSAPTHVVNQYLSIPFAKSPSKRFSPPEDHEPWNSIWNATNYRPSCIQHFANDEFRKIFNSDQPPESEDCLHLNIFTPSTITKRGRPVMVWIHGGSFQLGSARLSEYDGSFLASNHGVVVVTMNYRTNVFGFPASPEIPPDQRNLGFMDQRKALEWVNRNIGAFGGDPSKVTIFGESLGGYSVKQLLINPPQPLPFRAAITRSQAFGPSGDEEASWATLVKELKCNTTTAAHQHACVANAPAEAIRDVLDHKGLGFTPVVDNITNGPFFNDAFYQGSIAGVPVLIGTNADEGTVLTSVMPPPEQMLSGIFGNDTGSKELARSYYSSNATMAELESRILTDYSYTCTTSAIAELIAHGHQSVWRYFYNASFPNNEPFREVGAWHTSEIPLVFGTYRVDNETTASQVKLSDSMQSAWADFAKHPEDGPGWPMVGSQDKDLRVFDTTHAVRGRTIDRNSVDTVCTFYDAFVQLNGL
SIO_010081: FVRRES_13945
subclass of: SO_0000673
so part of: FVRRES_13945
location: complement(join(4721..5757,5815..6045,6104..6401))
location: region:4721-6401:-1
so has part: feature:6104-6401:-1:exon
so has part: feature:5815-6045:-1:exon
so has part: feature:4721-5757:-1:exon

XP_025583642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6104-6401:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5815-6045:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4721-5757:-1:exon

FVRRES_NPPA-AS1_2_902
type: Gene
subclass of: SO_0000704
RO_0002162: 56646
locus tag: FVRRES_NPPA-AS1_2_902
so part of: sequence
location: 7133..7255
location: region:7133-7255:1
so has part: feature:7133-7255:1:exon
subclass of: SO_0000578

37265805
type: Gene
SIO_000068: ncbigene

position:7133:1
position: 7133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7255:1
position: 7255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7133-7255:1:exon

FVRRES_NPPA-AS1_2_902
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 56646
nc RNA class: snoRNA
locus tag: FVRRES_NPPA-AS1_2_902
product: uncharacterized ncRNA
transcript id: XR_003149825.1
SIO_010081: FVRRES_NPPA-AS1_2_902
subclass of: SO_0000673
so part of: FVRRES_NPPA-AS1_2_902
location: 7133..7255
location: region:7133-7255:1
so has part: feature:7133-7255:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7133-7255:1:exon

FVRRES_13946
type: Gene
subclass of: SO_0000704
RO_0002162: 56646
locus tag: FVRRES_13946
so part of: sequence
location: <7339..>8259
location: region:7339-8259:1
so has part: feature:7339-8259:1:exon
subclass of: SO_0000010

37265575
type: Gene
SIO_000068: ncbigene

position:7339:1
position: 7339
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:8259:1
position: 8259
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7339-8259:1:exon

FVRRES_13946
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 56646
locus tag: FVRRES_13946
product: uncharacterized protein
transcript id: XM_025729369.1
SIO_010081: FVRRES_13946
subclass of: SO_0000673
so part of: FVRRES_13946
location: <7339..>8259
location: region:7339-8259:1
so has part: feature:7339-8259:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7339-8259:1:exon

FVRRES_13946
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 56646
locus tag: FVRRES_13946
codon start: 1
product: uncharacterized protein
translation: MLILIAGISGNMGQKLVHSLTSRGHHVRGLVRDASKMASNIYALLDDFVTCPVYYDIAALDRACTGVDDIICAYGMDPRLQLEGQLLLLRAAERANVGIYVTACWNHDWSKLGLGKHEAYDALISFRHHVEMTSTIKPIYVYNSIFAETLFSTIGHGHVGPDMPLVWDPNTKTMNIWGTGHSIWYWTTEQDSAEFAAEIIQRSDAAQGGYWNVCSGANSLLEVAKVYEQERGIQVMLHKLGTIDDLREKALKARKEGSKMDYHLYIGWFYQLYAIDGTWVFPKLDNDRLNVRTTSLVEFLKMQPET
SIO_010081: FVRRES_13946
subclass of: SO_0000673
so part of: FVRRES_13946
location: 7339..8259
location: region:7339-8259:1
so has part: feature:7339-8259:1:exon

XP_025583643.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7339-8259:1:exon

FVRRES_mir-154_901
type: Gene
subclass of: SO_0000704
RO_0002162: 56646
locus tag: FVRRES_mir-154_901
so part of: sequence
location: 8585..8632
location: region:8585-8632:1
so has part: feature:8585-8632:1:exon
subclass of: SO_0000578

37266121
type: Gene
SIO_000068: ncbigene

position:8585:1
position: 8585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8632:1
position: 8632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8585-8632:1:exon

FVRRES_mir-154_901
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 56646
nc RNA class: snoRNA
locus tag: FVRRES_mir-154_901
product: uncharacterized ncRNA
transcript id: XR_003150141.1
SIO_010081: FVRRES_mir-154_901
subclass of: SO_0000673
so part of: FVRRES_mir-154_901
location: 8585..8632
location: region:8585-8632:1
so has part: feature:8585-8632:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8585-8632:1:exon

FVRRES_snoR1_900
type: Gene
subclass of: SO_0000704
RO_0002162: 56646
locus tag: FVRRES_snoR1_900
so part of: sequence
location: 9104..9191
location: region:9104-9191:1
so has part: feature:9104-9191:1:exon
subclass of: SO_0000578

37266151
type: Gene
SIO_000068: ncbigene

position:9104:1
position: 9104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9191:1
position: 9191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9104-9191:1:exon

FVRRES_snoR1_900
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 56646
nc RNA class: snoRNA
locus tag: FVRRES_snoR1_900
product: uncharacterized ncRNA
transcript id: XR_003150171.1
SIO_010081: FVRRES_snoR1_900
subclass of: SO_0000673
so part of: FVRRES_snoR1_900
location: 9104..9191
location: region:9104-9191:1
so has part: feature:9104-9191:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9104-9191:1:exon